mRNA_H-elongata_contig78340.15502.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78340.15502.1
Unique NamemRNA_H-elongata_contig78340.15502.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig78340.15502.1 vs. uniprot
Match: D8LRQ2_ECTSI (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ2_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.560e-24
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 1
Query:    1 VSPFLIPALISNTASGVVAIEHKARGPNFGVVSACATGTHAIGTAMDLMLRGE 159
            VSPFLIPALISNTASGVVAIEHK RGPNFGVVSACATGTHAIGTAMD MLRGE
Sbjct:  197 VSPFLIPALISNTASGVVAIEHKCRGPNFGVVSACATGTHAIGTAMDFMLRGE 249          
BLAST of mRNA_H-elongata_contig78340.15502.1 vs. uniprot
Match: A0A836CDS1_9STRA (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDS1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.530e-23
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 1
Query:    1 VSPFLIPALISNTASGVVAIEHKARGPNFGVVSACATGTHAIGTAMDLMLRGE 159
            VSPFLIPALISNTASGVVAI+ KARGPNFGVVSACATGTHAIGTAMD MLRGE
Sbjct:  179 VSPFLIPALISNTASGVVAIDLKARGPNFGVVSACATGTHAIGTAMDFMLRGE 231          
BLAST of mRNA_H-elongata_contig78340.15502.1 vs. uniprot
Match: A0A7S1XSM4_9STRA (3-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSM4_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.890e-19
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 1
Query:    1 VSPFLIPALISNTASGVVAIEHKARGPNFGVVSACATGTHAIGTAMDLMLRGE 159
            VSPFLIPALISNTASG+VAI+  A GPNFGVVSACATGTHA+GTA+D + RGE
Sbjct:  169 VSPFLIPALISNTASGIVAIDVGAEGPNFGVVSACATGTHALGTALDFLKRGE 221          
BLAST of mRNA_H-elongata_contig78340.15502.1 vs. uniprot
Match: A0A2E6TGB4_9BACT (3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2E6TGB4_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 6.880e-17
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    1 VSPFLIPALISNTASGVVAIEHKARGPNFGVVSACATGTHAIGTAMDLMLRGE 159
            VSPF+IP+LI+N A GV+AIE+ ARGPNFGVVSACATGTHAIG ++ +M  GE
Sbjct:  127 VSPFMIPSLIANIAGGVIAIEYGARGPNFGVVSACATGTHAIGESLRIMTNGE 179          
BLAST of mRNA_H-elongata_contig78340.15502.1 vs. uniprot
Match: A0A7S0M182_9CRYP (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M182_9CRYP)

HSP 1 Score: 81.3 bits (199), Expect = 1.510e-16
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    1 VSPFLIPALISNTASGVVAIEHKARGPNFGVVSACATGTHAIGTAMDLMLRGE 159
            VSPFLIPALISNTASG+VAIE  A+GPN+GVVSACATG+HAIG A+  +  G+
Sbjct:  184 VSPFLIPALISNTASGIVAIEIGAKGPNYGVVSACATGSHAIGDALSFLQTGQ 236          
BLAST of mRNA_H-elongata_contig78340.15502.1 vs. uniprot
Match: UPI00198A0267 (Beta-ketoacyl-ACP synthase II n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI00198A0267)

HSP 1 Score: 79.7 bits (195), Expect = 4.740e-16
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1
Query:    1 VSPFLIPALISNTASGVVAIEHKARGPNFGVVSACATGTHAIGTAMDLMLRGE 159
            VSPF IPALI N  SG+VAIE  ARGPNFG+VSACATGTHAIG +M ++ RG+
Sbjct:  134 VSPFTIPALIGNICSGIVAIELGARGPNFGIVSACATGTHAIGESMHMIRRGD 186          
BLAST of mRNA_H-elongata_contig78340.15502.1 vs. uniprot
Match: A0A426CJR5_9BACT (3-oxoacyl-[acyl-carrier-protein] synthase 2 n=4 Tax=Opitutaceae TaxID=134623 RepID=A0A426CJR5_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 8.960e-16
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 1
Query:    1 VSPFLIPALISNTASGVVAIEHKARGPNFGVVSACATGTHAIGTAMDLMLRGEV 162
            VSPF IPALI N  SG+VAI+  ARGPNFG+VSACATGTHA+G AM ++ RG+V
Sbjct:  134 VSPFAIPALIGNMCSGMVAIDIGARGPNFGLVSACATGTHALGEAMHMVRRGDV 187          
BLAST of mRNA_H-elongata_contig78340.15502.1 vs. uniprot
Match: A0A2V2RXM6_9BACT (3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V2RXM6_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 9.010e-16
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    1 VSPFLIPALISNTASGVVAIEHKARGPNFGVVSACATGTHAIGTAMDLMLRGE 159
            VSPF+IP+LI+N ASG+VAIE  A+GPNF VVSACATG+HA+G A+D + +G+
Sbjct:  135 VSPFMIPSLIANIASGIVAIEFNAKGPNFSVVSACATGSHALGEALDFLRKGD 187          
BLAST of mRNA_H-elongata_contig78340.15502.1 vs. uniprot
Match: A0A8J2S636_9STRA (3-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S636_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.290e-15
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 1
Query:    1 VSPFLIPALISNTASGVVAIEHKARGPNFGVVSACATGTHAIGTAMDLMLRGE 159
            VSPF IPAL+ NTASGVV IE   RGPNFGVVSACA+GTHAIG AM  + RG+
Sbjct:  152 VSPFAIPALLGNTASGVVGIELNCRGPNFGVVSACASGTHAIGEAMLAIQRGD 204          
BLAST of mRNA_H-elongata_contig78340.15502.1 vs. uniprot
Match: A0A0E3UIQ1_9BACT (3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Verrucomicrobia bacterium IMCC26134 TaxID=1637999 RepID=A0A0E3UIQ1_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 1.690e-15
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1
Query:    1 VSPFLIPALISNTASGVVAIEHKARGPNFGVVSACATGTHAIGTAMDLMLRGE 159
            VSPF IPALI N  SG+ AIE  ARGPNFG+VSACATGTHAIG AM ++ RG+
Sbjct:  134 VSPFTIPALIGNICSGMFAIEIGARGPNFGIVSACATGTHAIGEAMHMIKRGD 186          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78340.15502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRQ2_ECTSI1.560e-2496.23Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
A0A836CDS1_9STRA3.530e-2394.34Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
A0A7S1XSM4_9STRA1.890e-1981.133-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=... [more]
A0A2E6TGB4_9BACT6.880e-1771.703-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Ta... [more]
A0A7S0M182_9CRYP1.510e-1673.58Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
UPI00198A02674.740e-1671.70Beta-ketoacyl-ACP synthase II n=1 Tax=Burkholderia... [more]
A0A426CJR5_9BACT8.960e-1670.373-oxoacyl-[acyl-carrier-protein] synthase 2 n=4 Ta... [more]
A0A2V2RXM6_9BACT9.010e-1666.043-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Ta... [more]
A0A8J2S636_9STRA1.290e-1573.583-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=... [more]
A0A0E3UIQ1_9BACT1.690e-1571.703-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78340contigH-elongata_contig78340:251..430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue1.5e-20
Seed eggNOG ortholog2880.D8LRQ2
KEGG rclassRC00039,RC02728,RC02729,RC02888
KEGG koko:K09458
KEGG ReactionR04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119
KEGG Pathwayko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212
KEGG ModuleM00083,M00572
EggNOG free text desc.3-oxoacyl-[acyl-carrier-protein] synthase activity
EggNOG OGsCOG0304@1,KOG1394@2759
EC2.3.1.179
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Hectar predicted targeting categorysignal peptide
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931188.1778426-CDS-H-elongata_contig78340:250..4301622931188.1778426-CDS-H-elongata_contig78340:250..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78340 251..430 -
1691679734.002993-CDS-H-elongata_contig78340:250..4301691679734.002993-CDS-H-elongata_contig78340:250..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78340 251..430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78340.15502.1prot_H-elongata_contig78340.15502.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78340 251..430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78340.15502.1

>prot_H-elongata_contig78340.15502.1 ID=prot_H-elongata_contig78340.15502.1|Name=mRNA_H-elongata_contig78340.15502.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
VSPFLIPALISNTASGVVAIEHKARGPNFGVVSACATGTHAIGTAMDLML
RGEVRLRYR*
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mRNA from alignment at H-elongata_contig78340:251..430-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78340.15502.1 ID=mRNA_H-elongata_contig78340.15502.1|Name=mRNA_H-elongata_contig78340.15502.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig78340:251..430- (Himanthalia elongata Himel1 dioecious)
GTGTCGCCCTTCTTGATCCCCGCTCTCATTTCCAACACGGCGTCCGGAGT CGTGGCGATCGAGCACAAGGCTCGCGGGCCGAATTTTGGCGTGGTATCGG CGTGCGCCACCGGAACCCATGCCATCGGCACCGCCATGGATTTGATGCTA CGAGGCGAGGTGCGTTTACGATATAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig78340:251..430-

>mRNA_H-elongata_contig78340.15502.1 ID=mRNA_H-elongata_contig78340.15502.1|Name=mRNA_H-elongata_contig78340.15502.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig78340:251..430- (Himanthalia elongata Himel1 dioecious)
GTGTCGCCCTTCTTGATCCCCGCTCTCATTTCCAACACGGCGTCCGGAGT
CGTGGCGATCGAGCACAAGGCTCGCGGGCCGAATTTTGGCGTGGTATCGG
CGTGCGCCACCGGAACCCATGCCATCGGCACCGCCATGGATTTGATGCTA
CGAGGCGAGGTGCGTTTACGATATAGGTAGGTGTCGCCCTTCTTGATCCC
CGCTCTCATTTCCAACACGGCGTCCGGAGTCGTGGCGATCGAGCACAAGG
CTCGCGGGCCGAATTTTGGCGTGGTATCGGCGTGCGCCACCGGAACCCAT
GCCATCGGCACCGCCATGGATTTGATGCTACGAGGCGAGGTGCGTTTACG
ATATAGGTAG
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