mRNA_H-elongata_contig78236.15494.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78236.15494.1
Unique NamemRNA_H-elongata_contig78236.15494.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78236.15494.1 vs. uniprot
Match: D8LRB5_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB5_ECTSI)

HSP 1 Score: 371 bits (953), Expect = 5.110e-119
Identity = 191/254 (75.20%), Postives = 212/254 (83.46%), Query Frame = 1 
Query:    1 REFRN---VMALRERRFMDTWLGSLRAGLAAEYGFYYRLPEAKQWQCIGQDLDLSWKDVVRPIMRYYTERTPGTYIEIKESSLTWHYRDADPHFGLWQAKDMQLHMEDVLSNLPLEILQGNRMVEVRHQAANKSMVAEAVLNLYSGPQSLHDRGEVDFVLCMGDDRSDEDMFQTVKRLRDHARDSSTPQLSPSPMSKDEHMFPDSPTGSGDADH-------SSSAQGLAMVGVARKMSRNAAVYTVHVGLEHSH 732
            R+++N   +++ RERRFMDTWLG LRAGLAAEYGFYYRLPEA QWQC GQDLDLSWKDVVRPIM+Y+TERTPGTYIE KESSLTWHYRDADPHFGLWQAKDMQ+HMEDVLSNLPLEILQGNRMVEVRHQAANKSMVAE VL L S  QS+  RGEVDF+LC+GDDRSDEDMFQTVKR RD A+++ TP LS     +D   F D P GSG+ D        +SS QG+AMVGV RKM+ NAAVYTVH+GLEHSH
Sbjct:  618 RDYKNRLFIISGRERRFMDTWLGKLRAGLAAEYGFYYRLPEATQWQCSGQDLDLSWKDVVRPIMQYFTERTPGTYIENKESSLTWHYRDADPHFGLWQAKDMQIHMEDVLSNLPLEILQGNRMVEVRHQAANKSMVAEEVLKLLSTEQSVRQRGEVDFILCVGDDRSDEDMFQTVKRFRDLAKEAPTPVLS---EDEDGMPFSDGPPGSGEMDQGVGSGSVASSGQGMAMVGVNRKMAGNAAVYTVHIGLEHSH 868
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BLAST of mRNA_H-elongata_contig78236.15494.1 vs. uniprot
Match: A0A6H5J883_9PHAE (GT20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J883_9PHAE)

HSP 1 Score: 315 bits (808), Expect = 7.420e-100
Identity = 156/195 (80.00%), Postives = 171/195 (87.69%), Query Frame = 1 
Query:    1 REFRN---VMALRERRFMDTWLGSLRAGLAAEYGFYYRLPEAKQWQCIGQDLDLSWKDVVRPIMRYYTERTPGTYIEIKESSLTWHYRDADPHFGLWQAKDMQLHMEDVLSNLPLEILQGNRMVEVRHQ----AANKSMVAEAVLNLYSGPQSLHDRGEVDFVLCMGDDRSDEDMFQTVKRLRDHARDSSTPQLS 564
            R+++N   +++ RERRFMDTWLG LRAGLAAEYGFYYRLPEA QWQC GQDLDLSWKDVVRPIM+Y+TERTPGTYIE KESSLTWHYRDADPHFGLWQAKDMQ+HMEDVL NLPLEILQGNRMVEVRHQ    AANKSMVAE VL L S  QS+  RGEVDF+LC+GDDRSDEDMFQTVKR RD A+++ TP LS
Sbjct:  435 RDYKNRLFIISGRERRFMDTWLGKLRAGLAAEYGFYYRLPEATQWQCSGQDLDLSWKDVVRPIMQYFTERTPGTYIENKESSLTWHYRDADPHFGLWQAKDMQIHMEDVLHNLPLEILQGNRMVEVRHQVRYQAANKSMVAEEVLKLLSTEQSVRQRGEVDFILCVGDDRSDEDMFQTVKRFRDLAKEAPTPVLS 629
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BLAST of mRNA_H-elongata_contig78236.15494.1 vs. uniprot
Match: A0A835Z8I3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8I3_9STRA)

HSP 1 Score: 291 bits (746), Expect = 4.710e-90
Identity = 152/238 (63.87%), Postives = 174/238 (73.11%), Query Frame = 1 
Query:   16 VMALRERRFMDTWLGSLRAGLAAEYGFYYRLPEAKQWQCIGQDLDLSWKDVVRPIMRYYTERTPGTYIEIKESSLTWHYRDADPHFGLWQAKDMQLHMEDVLSNLPLEILQGNRMVEVRHQAANKSMVAEAVLNLYSGPQSLHDRGEVDFVLCMGDDRSDEDMFQTVKRLRDHARDSSTPQLSPSPMSKDEHMFPDSPTGSGDADHSSSAQGLAMVGVARKMSRNAAVYTVHVGLEHS 729
            +++ RERRFMD W G+LR GLAAEYGFYYRLP   QWQC GQ LDL+WK+VV PIM+Y+TERTPGTYIE KESSLTWHYRDADPHFGLWQAKDMQ++MED LSN+PLEILQGNRMVEVRHQAANKS VA+ VL   S P +  + GEVDFVLC+GDDRSDEDMF  V+RLRD AR       SP  M+  E          GD +  +           R M+RNA VYTVH+G + S
Sbjct:  557 IISGRERRFMDRWFGNLRVGLAAEYGFYYRLPNQDQWQCAGQGLDLTWKNVVHPIMQYFTERTPGTYIENKESSLTWHYRDADPHFGLWQAKDMQINMEDSLSNMPLEILQGNRMVEVRHQAANKSFVADRVLKAMSEPAARAEHGEVDFVLCVGDDRSDEDMFTMVQRLRDQAR------ASPPSMATGER---------GDHERDNPP---------RCMARNANVYTVHIGQDQS 770
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BLAST of mRNA_H-elongata_contig78236.15494.1 vs. uniprot
Match: K8YXH8_NANGC (Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YXH8_NANGC)

HSP 1 Score: 249 bits (636), Expect = 4.600e-73
Identity = 115/176 (65.34%), Postives = 143/176 (81.25%), Query Frame = 1 
Query:   16 VMALRERRFMDTWLGSLRAGLAAEYGFYYRLPEAKQWQCIGQDLDLSWKDVVRPIMRYYTERTPGTYIEIKESSLTWHYRDADPHFGLWQAKDMQLHMEDVLSNLPLEILQGNRMVEVRHQAANKSMVAEAVLNLYSGPQ--SLHDRGEVDFVLCMGDDRSDEDMFQTVKRLRDHA 537
            +++ RE+RFMDTWLG L+  LAAEYGFYYR+PE ++WQ +  ++D SW+D+VRPI+ Y+TERTPGTYIE KESSLTWHYRDADP+FG WQAKDMQ+ +EDVLSNLPLEI+QGNRMVEVRHQ A+K MV E+VL   + P   + +    +DFV C+GDDR+DEDMFQ +K LR  A
Sbjct:  598 IVSGREKRFMDTWLGKLKMALAAEYGFYYRMPEEEEWQTMAPEVDTSWRDIVRPILEYFTERTPGTYIEKKESSLTWHYRDADPNFGSWQAKDMQIQLEDVLSNLPLEIIQGNRMVEVRHQGASKGMVVESVLRYMADPSRGAKNSDTPLDFVFCVGDDRTDEDMFQVLKILRGEA 773
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BLAST of mRNA_H-elongata_contig78236.15494.1 vs. uniprot
Match: F0Y2I9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2I9_AURAN)

HSP 1 Score: 243 bits (620), Expect = 1.460e-71
Identity = 118/177 (66.67%), Postives = 142/177 (80.23%), Query Frame = 1 
Query:   16 VMALRERRFMDTWLGSLRAGLAAEYGFYYRLPEAKQ--WQCIGQDLDLSWKDVVRPIMRYYTERTPGTYIEIKESSLTWHYRDADPHFGLWQAKDMQLHMEDVLSNLPLEILQGNRMVEVRHQAANKSMVAEAVLNLYSGPQSLHDRGEVDFVLCMGDDRSDEDMFQTVKRLRDHAR 540
            VM+ RERRFMD WLG L+ GLAAE+G+ +R P+ +Q  W+ +G++LD SWKDVVRPIM+Y+ ERTPGTYIE KESSL WHYRDADPHFG WQAKDMQ+HMEDV+SNLPLEI+QGNR+VEVRH   NKS+V E VL +  GP+      + DFVLC+GDDRSDEDM+Q +K    HAR
Sbjct:  604 VMSGRERRFMDKWLGKLKVGLAAEFGYCHRAPDDEQGVWKSLGRELDTSWKDVVRPIMQYFAERTPGTYIESKESSLAWHYRDADPHFGAWQAKDMQIHMEDVMSNLPLEIIQGNRLVEVRHVGVNKSLVLEEVLRM--GPRGETADVDFDFVLCVGDDRSDEDMYQLLKAW--HAR 776
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BLAST of mRNA_H-elongata_contig78236.15494.1 vs. uniprot
Match: A0A8J2S9Z6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9Z6_9STRA)

HSP 1 Score: 236 bits (603), Expect = 7.820e-69
Identity = 116/183 (63.39%), Postives = 140/183 (76.50%), Query Frame = 1 
Query:   16 VMALRERRFMDTWLGSLRAGLAAEYGFYYRLPEAKQWQCIGQDLDLSWKDVVRPIMRYYTERTPGTYIEIKESSLTWHYRDADPHFGLWQAKDMQLHMEDVLSNLPLEILQGNRMVEVRHQAANKSMVAEAVLNLYSGPQSLHD-----RGE----------VDFVLCMGDDRSDEDMFQTVK 519
            V++ RERRFM+ WLG L+ GLAAE+GF +R P +++W  +G+DLD SWKDVVRPIM+Y+ ERTPGTYIE KESSL WHYRDADPHFG WQAKDMQ+HMEDV+S LPLEI+QGNR+VEVRH   NKS+V E VL    GP++ +D     R E           DFVLC+GDDRSDEDM+Q +K
Sbjct:  650 VVSGRERRFMEKWLGRLKVGLAAEFGFCHRAPGSEEWTSLGRDLDTSWKDVVRPIMQYFAERTPGTYIESKESSLAWHYRDADPHFGAWQAKDMQIHMEDVMSTLPLEIIQGNRLVEVRHVGVNKSLVLEEVLR--QGPRNGYDPPPPSRSEDSPQVALTEDFDFVLCVGDDRSDEDMYQLLK 830
[Close]
BLAST of mRNA_H-elongata_contig78236.15494.1 vs. uniprot
Match: A0A7S1UK50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK50_9STRA)

HSP 1 Score: 221 bits (564), Expect = 2.830e-64
Identity = 124/236 (52.54%), Postives = 145/236 (61.44%), Query Frame = 1 
Query:   16 VMALRERRFMDTWLGSLRAGLAAEYGFYYRLPEAKQWQCIGQDLDLSWKDVVRPIMRYYTERTPGTYIEIKESSLTWHYRDADPHFGLWQAKDMQLHMEDVLSNLPLEILQGNRMVEVRHQAANKSMVAEAVL-------------------------------------------NLYSGPQS---LH---DRG-----------EVDFVLCMGDDRSDEDMFQTVKRLRDHARD 543
            +++ RERRFMDTWLG LR GLAAE+G YYRLP    WQ +  D+D++WK VVRPIM Y+ ERTPGTYIE K+SSLTWHYRDADPHFG WQAKDMQ+HMEDVL+NLPLEILQGN+++EVRH+ ANKS V EAVL                                           NL    QS   LH   D G           +VDFV C+GDDRSDEDMF  +K L   A++
Sbjct:  414 IISGRERRFMDTWLGRLRVGLAAEHGSYYRLPWDVDWQTLCSDVDVTWKKVVRPIMEYFEERTPGTYIEDKDSSLTWHYRDADPHFGSWQAKDMQMHMEDVLTNLPLEILQGNKVLEVRHRNANKSTVLEAVLTRLVSIGNETNGAGVPQPPTAGGAEAGEASAPRTIAEDEELVRNLAKKSQSDGQLHAGADDGKPAFDMPLAFEQVDFVFCVGDDRSDEDMFYYLKSLYTEAQE 649
[Close]
BLAST of mRNA_H-elongata_contig78236.15494.1 vs. uniprot
Match: K3W821_GLOUD (Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W821_GLOUD)

HSP 1 Score: 170 bits (431), Expect = 8.350e-45
Identity = 87/192 (45.31%), Postives = 119/192 (61.98%), Query Frame = 1 
Query:   31 ERRFMDTWLGSLRAGLAAEYGFYYRLPEAKQWQCIGQDLDLSWKDVVRPIMRYYTERTPGTYIEIKESSLTWHYRDADPHFGLWQAKDMQLHMEDVLSNLPLEILQGNRMVEVRHQAANKSMVAEAVLNLYSGPQS-------------------LHDRGEVDFVLCMGDDRSDEDMFQTVKRLRDHARDSS 549
            +R  + +WL   R G+ AE G+ YRLP   +W+ + +D+D SWK VVRPIM+Y+TERTPG+ IE KESSLTWHY + DP FG  QA+DMQ+++EDVL NLPLEILQG   VEVR Q   K+++ E VL  +   QS                     ++ +VDFV C G+   D+D+F   K  ++ A+ +S
Sbjct:  680 DRSVIGSWLNDKRIGIVAESGYCYRLPHEDEWETMAEDMDPSWKRVVRPIMQYFTERTPGSRIETKESSLTWHYGETDPIFGPMQARDMQINLEDVLCNLPLEILQGTNRVEVRLQGITKTVIIEEVLKQFYHAQSPANTPSSRATSPPSRLKKPQQEKQQVDFVFCAGNGLEDDDLFTFFKEHQELAKKAS 871
[Close]
BLAST of mRNA_H-elongata_contig78236.15494.1 vs. uniprot
Match: A0A812HB55_9DINO (TPS5 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812HB55_9DINO)

HSP 1 Score: 166 bits (419), Expect = 3.610e-43
Identity = 87/183 (47.54%), Postives = 116/183 (63.39%), Query Frame = 1 
Query:   16 VMALRERRFMDTWLGSL-RAGLAAEYGFYYRLP--EAKQWQCIGQDLDLSWKDVVRPIMRYYTERTPGTYIEIKESSLTWHYRDADPHFGLWQAKDMQLHMEDVLSNLPLEILQGNRMVEVRHQAANKSMVAEAVLNLYSGPQSLHDRGEVDFVLCMGDDRSDEDMFQTVKRLRDHARDSSTP 555
            +++ R R  M+ W GS+ R GLAAE GF+Y+LP     QW C+ Q  D +WK     IMR + +RT G++IE K S+L W YRDADPHFG WQAK++  H++++L    LEIL+G   VEV+    NK +     L   S  QS    GEVDF+LC+GDDRSDEDMF+ V ++ D A +  TP
Sbjct:  790 ILSGRNREMMEGWFGSVPRLGLAAERGFFYKLPFNTGGQWHCMVQRPDYTWKSFAFEIMRNFVKRTQGSFIENKGSALVWQYRDADPHFGSWQAKELSSHLKELLIGYDLEILEGKGYVEVKVSGVNKGVAVTKALTKVS--QSF---GEVDFILCIGDDRSDEDMFEVVNQMLDPADELETP 967
[Close]
BLAST of mRNA_H-elongata_contig78236.15494.1 vs. uniprot
Match: A0A024GFP9_9STRA (Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=2 Tax=Albugo TaxID=65356 RepID=A0A024GFP9_9STRA)

HSP 1 Score: 165 bits (417), Expect = 6.040e-43
Identity = 80/174 (45.98%), Postives = 112/174 (64.37%), Query Frame = 1 
Query:   16 VMALRERRFMDTWLGSLRAGLAAEYGFYYRLPEAKQWQCIGQDLDLSWKDVVRPIMRYYTERTPGTYIEIKESSLTWHYRDADPHFGLWQAKDMQLHMEDVLSNLPLEILQGNRMVEVRHQAANKSMVAEAVLNL--YSGPQSLHDRGEVDFVLCMGDDRSDEDMFQTVKRLRD 531
            +M    R F+ +WLG  R G+AAE G+YYRLP+ K+WQ IG+ +D SWK VV+PIM+Y+TERTPG+ +E  +SSLTWHY   D  FG  QA+D+QL++ED+L NLPLE+LQ    VEVR    +K ++ +  +     S   +       DF+LC+G    DED+F   ++  D
Sbjct:  618 LMTSHRRDFLTSWLGDTRVGMAAESGYYYRLPQEKEWQKIGETVDASWKRVVQPIMQYFTERTPGSLVETTDSSLTWHYGRTDSIFGPMQARDLQLNLEDLLCNLPLEVLQRRDCVEVRLPEVSKRVLLDGCMEQAGLSVENNTPQTDRFDFMLCIGTGADDEDVFSYFRKFYD 791
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78236.15494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRB5_ECTSI5.110e-11975.20Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
A0A6H5J883_9PHAE7.420e-10080.00GT20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z8I3_9STRA4.710e-9063.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8YXH8_NANGC4.600e-7365.34Alpha,alpha-trehalose-phosphate synthase (UDP-form... [more]
F0Y2I9_AURAN1.460e-7166.67Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2S9Z6_9STRA7.820e-6963.39Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1UK50_9STRA2.830e-6452.54Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
K3W821_GLOUD8.350e-4545.31Alpha,alpha-trehalose-phosphate synthase (UDP-form... [more]
A0A812HB55_9DINO3.610e-4347.54TPS5 protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A024GFP9_9STRA6.040e-4345.98Alpha,alpha-trehalose-phosphate synthase (UDP-form... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78236contigH-elongata_contig78236:458..2847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score242.7
Seed ortholog evalue1.8e-61
Seed eggNOG ortholog44056.XP_009034302.1
Preferred nameTPS2
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K01087,ko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0003825,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009311,GO:0009312,GO:0009743,GO:0009756,GO:0009790,GO:0009791,GO:0009793,GO:0009832,GO:0009987,GO:0010033,GO:0010154,GO:0010182,GO:0016051,GO:0016311,GO:0016740,GO:0016757,GO:0016758,GO:0016787,GO:0016788,GO:0016791,GO:0022414,GO:0023052,GO:0032501,GO:0032502,GO:0033554,GO:0034637,GO:0035251,GO:0042221,GO:0042546,GO:0042578,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044424,GO:0044464,GO:0046351,GO:0046527,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051301,GO:0051716,GO:0061458,GO:0065007,GO:0070413,GO:0070887,GO:0071310,GO:0071322,GO:0071554,GO:0071669,GO:0071704,GO:0071840,GO:1901576,GO:1901700,GO:1901701
EggNOG free text desc.trehalose biosynthetic process
EggNOG OGsCOG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.G
CAZyGT20
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons4
Model size732
Cds size714
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78236.15494.1prot_H-elongata_contig78236.15494.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78236 476..2847 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931187.3368406-UTR-H-elongata_contig78236:457..4751622931187.3368406-UTR-H-elongata_contig78236:457..475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78236 458..475 +
1691679733.6381612-UTR-H-elongata_contig78236:457..4751691679733.6381612-UTR-H-elongata_contig78236:457..475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78236 458..475 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931187.3527431-CDS-H-elongata_contig78236:475..6931622931187.3527431-CDS-H-elongata_contig78236:475..693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78236 476..693 +
1691679733.6506102-CDS-H-elongata_contig78236:475..6931691679733.6506102-CDS-H-elongata_contig78236:475..693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78236 476..693 +
1622931187.3648336-CDS-H-elongata_contig78236:1338..14801622931187.3648336-CDS-H-elongata_contig78236:1338..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78236 1339..1480 +
1691679733.660549-CDS-H-elongata_contig78236:1338..14801691679733.660549-CDS-H-elongata_contig78236:1338..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78236 1339..1480 +
1622931187.3788972-CDS-H-elongata_contig78236:1753..19631622931187.3788972-CDS-H-elongata_contig78236:1753..1963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78236 1754..1963 +
1691679733.670337-CDS-H-elongata_contig78236:1753..19631691679733.670337-CDS-H-elongata_contig78236:1753..1963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78236 1754..1963 +
1622931187.3932226-CDS-H-elongata_contig78236:2703..28471622931187.3932226-CDS-H-elongata_contig78236:2703..2847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78236 2704..2847 +
1691679733.6799095-CDS-H-elongata_contig78236:2703..28471691679733.6799095-CDS-H-elongata_contig78236:2703..2847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78236 2704..2847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78236.15494.1

>prot_H-elongata_contig78236.15494.1 ID=prot_H-elongata_contig78236.15494.1|Name=mRNA_H-elongata_contig78236.15494.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=238bp
MALRERRFMDTWLGSLRAGLAAEYGFYYRLPEAKQWQCIGQDLDLSWKDV
VRPIMRYYTERTPGTYIEIKESSLTWHYRDADPHFGLWQAKDMQLHMEDV
LSNLPLEILQGNRMVEVRHQAANKSMVAEAVLNLYSGPQSLHDRGEVDFV
LCMGDDRSDEDMFQTVKRLRDHARDSSTPQLSPSPMSKDEHMFPDSPTGS
GDADHSSSAQGLAMVGVARKMSRNAAVYTVHVGLEHSH
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mRNA from alignment at H-elongata_contig78236:458..2847+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78236.15494.1 ID=mRNA_H-elongata_contig78236.15494.1|Name=mRNA_H-elongata_contig78236.15494.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2390bp|location=Sequence derived from alignment at H-elongata_contig78236:458..2847+ (Himanthalia elongata Himel1 dioecious)
CGTGAATTTCGTAACGTTATGGCATTAAGAGAGCGTCGGTTCATGGACAC
CTGGTTGGGCAGCCTCCGCGCCGGGCTCGCGGCGGAGTACGGCTTCTACT
ACCGCCTGCCGGAGGCGAAACAGTGGCAGTGCATCGGACAGGACCTGGAC
CTGAGCTGGAAGGACGTGGTACGTCCGATCATGAGATACTACACGGAGCG
CACCCCTGGCACCTACATCGAGATCAAGGAGTCAAGGTGTGCCTCCCGGT
CCGGGTCCCCCTCAGCAAGCTTTGGTAGACTTCAAAAGTGTGTGGTTGTG
TGTGTATTTATTACATTGCACATAACCGTGCAATCCGGCCCTGTCGTCCT
AGTCCTTCTAAGCTACACGCATTGATCCTCCCAAAGGGGTATCAGTGTGT
GTGTGTATGTGTATATTCATTAAATTGCACATAACCGCGCAATCCGGCCC
TGTCGTCCTAGTCCTTCTATGCCACTCGTGTGTGTGTGTGTATTTATGAA
ATTGCACATAACGACGCAATCCGGCCCTCTGATATAGTCATTCTATCCTA
CTACATGAAGCCCACCCGAGGTTTCTTTATTTTCGGCAAAAATATGTGTG
CATTTAGCCACAACGCCTCTTCACACTAATATATGTATGTATGTGTGAAT
CTTGATCTTGAATCTTGAATCTACAGTAGTTTTTGCGACTATTAAAAGTG
GCGATATAATTGTTTCGCAGAGAGCGTGCGACCTTACCTCGACAATATAG
CGTAACGGACTGTAGAAATACCCCCGGAAATTATATACTACTCATTAGAG
CCACAGTCACATAACCCCCCCCCCATGCACACACACACACCACCCCTGCT
CCGCCTTCCCGACTACACCGGCCAATCACAGCTTGACCTGGCACTACCGC
GACGCGGACCCTCACTTCGGGCTGTGGCAGGCAAAGGATATGCAACTCCA
CATGGAGGATGTTCTTAGCAACCTGCCCCTCGAGATTCTGCAGGGGAACC
GTATGGTGGAGGTCAGACACCAGGTGATATAAGAAGATGTGGAAGAATAG
ACCGGTGTTTGAGGCCTTTCCGTGTTCAGAAAGGCGGTACGGGATGGGGC
GGGGGAGGGAGGGAGAAATCGCGTCTCGGGAGGAAAACAGGAAACTTGTT
TTCGAGTTTATTTATTTTTTGGCTCTGGTTCTGGTGTTTATTTCCCCTCC
TCTATCTCACGACCACGCATGAGACAAACCCGGCTCATCGCCTCGTCCCT
TCACTTTCTCTCTCTACCAATATGTCTCTCTACCAATATGTCTCAGGCGG
CAAACAAGAGTATGGTGGCGGAGGCGGTCCTCAACCTGTATTCGGGGCCA
CAATCCCTCCATGATAGAGGGGAGGTAGATTTCGTGCTGTGCATGGGGGA
CGATAGAAGCGACGAGGATATGTTCCAGACAGTTAAGCGCTTGAGGGATC
ACGCCAGGGATTCCTCCACGCCGCAGCTCTCCCCAAGCCCGATGTCAAAG
GATGAGGTTCGTCGGTATTAGTAGAAAGACAGAGAAAAGGGGTTGATTGG
GGACTGTGTTGCGAGGGGATTTGGTAGAGGACGTCTTCGGGTTTTTTTGT
GTACATTATTTTCATGCCTTGGCGTTTTACTGGCACGGTATTTATGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGATAATATAATGCTATGGTCACCCAAC
CCCCCGACGACTCCTCCAGTCACTCTCCACTGATCGACCCTGAATTGAAA
CGCACCTAATCGGCAATCGTAAGAACATGTATCTACTGCTCTCCACAGAA
CGATTCCTAGCGGTCGAGCGTGCCGTTCCTCCGTGGAGGACTTCAGGCTC
AAAGAGGCCGTGTTGATGGTGGGGTGTCTGCAAAGGAGGAAGGGGGCAGG
TTTGTCACTATCAACACGGCGCCTTCGAAACTGAAGGCCCCAACGGAGGG
ACGGAGTGCTCGACCGCTAGGAATCGTCCCGAGGAGAGTAACAACTACCT
TGTTAATGTGACCGACGTTCGGGTGCGTTTCACTTCAGGGTCGGCCAGTG
AAGAGAGTGGCTCGAGGCGTCGTCGGGGCGTTGGATGGCATTTTCTGGGA
ATAATTAAGAAAACAATACCTTGGCTTTTCCTGTGATACCTCCCTCGCGT
TTGTCGGGACATGACCGCTTCGTATCACTCCTTCTGATATTTTCGCTCTC
ACATCTCCCCGACACAAACACGCCTTTTCATCCGTTTTCTCTCCAGCACA
TGTTTCCGGACAGCCCGACGGGGTCTGGAGACGCGGATCATTCTTCGTCG
GCCCAGGGCTTAGCTATGGTCGGGGTGGCTCGTAAAATGTCGCGCAACGC
CGCGGTATACACAGTTCACGTCGGCCTTGAACACAGCCAC
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Coding sequence (CDS) from alignment at H-elongata_contig78236:458..2847+

>mRNA_H-elongata_contig78236.15494.1 ID=mRNA_H-elongata_contig78236.15494.1|Name=mRNA_H-elongata_contig78236.15494.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1428bp|location=Sequence derived from alignment at H-elongata_contig78236:458..2847+ (Himanthalia elongata Himel1 dioecious)
ATGGCATTAAGAGAGCGTCGGTTCATGGACACCTGGTTGGGCAGCCTCCG
CGCCGGGCTCGCGGCGGAGTACGGCTTCTACTACCGCCTGCCGGAGGCGA
AACAGTGGCAGTGCATCGGACAGGACCTGGACCTGAGCTGGAAGGACGTG
GTACGTCCGATCATGAGATACTACACGGAGCGCACCCCTGGCACCTACAT
CGAGATCAAGGAGTCAAGATGGCATTAAGAGAGCGTCGGTTCATGGACAC
CTGGTTGGGCAGCCTCCGCGCCGGGCTCGCGGCGGAGTACGGCTTCTACT
ACCGCCTGCCGGAGGCGAAACAGTGGCAGTGCATCGGACAGGACCTGGAC
CTGAGCTGGAAGGACGTGGTACGTCCGATCATGAGATACTACACGGAGCG
CACCCCTGGCACCTACATCGAGATCAAGGAGTCAAGCTTGACCTGGCACT
ACCGCGACGCGGACCCTCACTTCGGGCTGTGGCAGGCAAAGGATATGCAA
CTCCACATGGAGGATGTTCTTAGCAACCTGCCCCTCGAGATTCTGCAGGG
GAACCGTATGGTGGAGGTCAGACACCAGCTTGACCTGGCACTACCGCGAC
GCGGACCCTCACTTCGGGCTGTGGCAGGCAAAGGATATGCAACTCCACAT
GGAGGATGTTCTTAGCAACCTGCCCCTCGAGATTCTGCAGGGGAACCGTA
TGGTGGAGGTCAGACACCAGGCGGCAAACAAGAGTATGGTGGCGGAGGCG
GTCCTCAACCTGTATTCGGGGCCACAATCCCTCCATGATAGAGGGGAGGT
AGATTTCGTGCTGTGCATGGGGGACGATAGAAGCGACGAGGATATGTTCC
AGACAGTTAAGCGCTTGAGGGATCACGCCAGGGATTCCTCCACGCCGCAG
CTCTCCCCAAGCCCGATGTCAAAGGATGAGGCGGCAAACAAGAGTATGGT
GGCGGAGGCGGTCCTCAACCTGTATTCGGGGCCACAATCCCTCCATGATA
GAGGGGAGGTAGATTTCGTGCTGTGCATGGGGGACGATAGAAGCGACGAG
GATATGTTCCAGACAGTTAAGCGCTTGAGGGATCACGCCAGGGATTCCTC
CACGCCGCAGCTCTCCCCAAGCCCGATGTCAAAGGATGAGCACATGTTTC
CGGACAGCCCGACGGGGTCTGGAGACGCGGATCATTCTTCGTCGGCCCAG
GGCTTAGCTATGGTCGGGGTGGCTCGTAAAATGTCGCGCAACGCCGCGGT
ATACACAGTTCACGTCGGCCTTGAACACAGCCACCACATGTTTCCGGACA
GCCCGACGGGGTCTGGAGACGCGGATCATTCTTCGTCGGCCCAGGGCTTA
GCTATGGTCGGGGTGGCTCGTAAAATGTCGCGCAACGCCGCGGTATACAC
AGTTCACGTCGGCCTTGAACACAGCCAC
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