mRNA_H-elongata_contig78235.15493.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78235.15493.1
Unique NamemRNA_H-elongata_contig78235.15493.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78235.15493.1 vs. uniprot
Match: A0A6H5KNM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM8_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.110e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   37 QVATPYFVDNSTYYILSVTLHINCDTEGATIRYTLDGTDP 156
            +VATP F   + + ++S T HI CDTEGATIRYTLDG+DP
Sbjct:  294 KVATPRFTGTAQHSVMSYTDHIECDTEGATIRYTLDGSDP 333
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BLAST of mRNA_H-elongata_contig78235.15493.1 vs. uniprot
Match: D8LI16_ECTSI (NAGPA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI16_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.120e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   37 QVATPYFVDNSTYYILSVTLHINCDTEGATIRYTLDGTDP 156
            +VATP F   + + ++S T HI CDTEGATIRYTLDG+DP
Sbjct:  277 KVATPRFTGTAQHSVMSYTDHIECDTEGATIRYTLDGSDP 316
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BLAST of mRNA_H-elongata_contig78235.15493.1 vs. uniprot
Match: A0A835ZFT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 9.950e-7
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   31 TQQVATPYFVDNSTYYILSVTLHINCDTEGATIRYTLDGTDPAP 162
            T +V+TP F +++  +I S T+H+ CDT+GA I YT DGTDP P
Sbjct:   59 TDKVSTPSFSESAGVFIKSATIHVVCDTDGAVISYTDDGTDPVP 102
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BLAST of mRNA_H-elongata_contig78235.15493.1 vs. uniprot
Match: E4SCH2_CALK2 (Glycoside hydrolase family 16 n=1 Tax=Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 / 2002) TaxID=632348 RepID=E4SCH2_CALK2)

HSP 1 Score: 48.9 bits (115), Expect = 3.160e-5
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   37 QVATPYFVDNSTYYILSVTLHINCDTEGATIRYTLDGTDPAP 162
            +VATP     S  Y+ S  + I CDTEGATIRYT+DG++P P
Sbjct: 2229 KVATPVITPASGTYVGSQIVTITCDTEGATIRYTIDGSNPTP 2270
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BLAST of mRNA_H-elongata_contig78235.15493.1 vs. uniprot
Match: A0A7V3AN45_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A7V3AN45_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 4.290e-5
Identity = 25/43 (58.14%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:   28 STQQVATPYFVDNSTYYILSVTLHINCDTEGATIRYTLDGTDP 156
            STQ V TP    +S  Y  SVT+ + C T GATIRYTLDG+DP
Sbjct:  760 STQTVLTPTITPSSGTYRSSVTVAMTCATPGATIRYTLDGSDP 802
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BLAST of mRNA_H-elongata_contig78235.15493.1 vs. uniprot
Match: A0A524HHX0_9BACT (PA14 domain-containing protein (Fragment) n=1 Tax=Candidatus Brocadiae bacterium TaxID=2517210 RepID=A0A524HHX0_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 5.880e-5
Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   40 VATPYFVDNSTYYILSVTLHINCDTEGATIRYTLDGTDP 156
            V TPY   N+TY++ +  + + CDT+GA IRYT+DGT+P
Sbjct:  908 VPTPYVSSNNTYFVGATKVVLACDTKGARIRYTVDGTEP 946
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78235.15493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KNM8_9PHAE1.110e-762.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI16_ECTSI1.120e-762.50NAGPA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZFT5_9STRA9.950e-752.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
E4SCH2_CALK23.160e-554.76Glycoside hydrolase family 16 n=1 Tax=Caldicellulo... [more]
A0A7V3AN45_9BACT4.290e-558.14Uncharacterized protein (Fragment) n=1 Tax=Elusimi... [more]
A0A524HHX0_9BACT5.880e-551.28PA14 domain-containing protein (Fragment) n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78235contigH-elongata_contig78235:2107..2268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931187.2330744-CDS-H-elongata_contig78235:2106..22681622931187.2330744-CDS-H-elongata_contig78235:2106..2268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78235 2107..2268 -
1691679733.6279578-CDS-H-elongata_contig78235:2106..22681691679733.6279578-CDS-H-elongata_contig78235:2106..2268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78235 2107..2268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78235.15493.1prot_H-elongata_contig78235.15493.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78235 2107..2268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78235.15493.1

>prot_H-elongata_contig78235.15493.1 ID=prot_H-elongata_contig78235.15493.1|Name=mRNA_H-elongata_contig78235.15493.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
HTRKYNNPPSTQQVATPYFVDNSTYYILSVTLHINCDTEGATIRYTLDGT
DPAP
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mRNA from alignment at H-elongata_contig78235:2107..2268-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78235.15493.1 ID=mRNA_H-elongata_contig78235.15493.1|Name=mRNA_H-elongata_contig78235.15493.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig78235:2107..2268- (Himanthalia elongata Himel1 dioecious)
CACACACGAAAATATAACAATCCACCATCCACCCAGCAGGTGGCCACGCC
GTACTTCGTGGACAACAGTACCTACTACATCTTGTCCGTCACTCTCCACA
TCAATTGCGACACAGAGGGGGCCACGATCCGGTATACGCTGGATGGCACC
GACCCGGCTCCC
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Coding sequence (CDS) from alignment at H-elongata_contig78235:2107..2268-

>mRNA_H-elongata_contig78235.15493.1 ID=mRNA_H-elongata_contig78235.15493.1|Name=mRNA_H-elongata_contig78235.15493.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig78235:2107..2268- (Himanthalia elongata Himel1 dioecious)
CACACACGAAAATATAACAATCCACCATCCACCCAGCAGGTGGCCACGCC
GTACTTCGTGGACAACAGTACCTACTACATCTTGTCCGTCACTCTCCACA
TCAATTGCGACACAGAGGGGGCCACGATCCGGTATACGCTGGATGGCACC
GACCCGGCTCCCCACACACGAAAATATAACAATCCACCATCCACCCAGCA
GGTGGCCACGCCGTACTTCGTGGACAACAGTACCTACTACATCTTGTCCG
TCACTCTCCACATCAATTGCGACACAGAGGGGGCCACGATCCGGTATACG
CTGGATGGCACCGACCCGGCTCCC
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