mRNA_H-elongata_contig78158.15485.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78158.15485.1
Unique NamemRNA_H-elongata_contig78158.15485.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78158.15485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78158contigH-elongata_contig78158:2..806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size805
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78158.15485.1prot_H-elongata_contig78158.15485.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78158 174..692 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931186.287284-UTR-H-elongata_contig78158:1..1731622931186.287284-UTR-H-elongata_contig78158:1..173Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78158 2..173 +
1691679733.4123554-UTR-H-elongata_contig78158:1..1731691679733.4123554-UTR-H-elongata_contig78158:1..173Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78158 2..173 +
1622931186.3212516-UTR-H-elongata_contig78158:692..8061622931186.3212516-UTR-H-elongata_contig78158:692..806Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78158 693..806 +
1691679733.4313135-UTR-H-elongata_contig78158:692..8061691679733.4313135-UTR-H-elongata_contig78158:692..806Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78158 693..806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931186.301108-CDS-H-elongata_contig78158:173..6921622931186.301108-CDS-H-elongata_contig78158:173..692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78158 174..692 +
1691679733.4211771-CDS-H-elongata_contig78158:173..6921691679733.4211771-CDS-H-elongata_contig78158:173..692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78158 174..692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78158.15485.1

>prot_H-elongata_contig78158.15485.1 ID=prot_H-elongata_contig78158.15485.1|Name=mRNA_H-elongata_contig78158.15485.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
MISGYWGAPGRALKNYDRVIRCNNKKESVGNNKKDNVWSISGDVNSRTRL
QKHTFTHGAGNKRRNRGGASVRRWDTGDISVAVVKEVRRESVGLIMAEAT
GIQYSEQGIIKGGVEGLYMNCRESISPLSHLIRGFRYKYDRFPIGRTNAS
VRRLERLLVASQGWIGRLCAIL*
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mRNA from alignment at H-elongata_contig78158:2..806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78158.15485.1 ID=mRNA_H-elongata_contig78158.15485.1|Name=mRNA_H-elongata_contig78158.15485.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=805bp|location=Sequence derived from alignment at H-elongata_contig78158:2..806+ (Himanthalia elongata Himel1 dioecious)
GAGGAAGAAAGCACGTGGGGGCGAAATACAAGCAGTTGTAGTACTTGCTG
CTGCGGCAACCTTCCGCCGTATATATTGAAAATATAATAATAATATAGCA
ACCCAGTTGGGTTAAGGATAGAGCGACGACATTAATTCAAATGACCCAGA
GCTGTCACATCTCTGGCGTGAAATGATATCGGGGTATTGGGGGGCTCCTG
GTCGAGCTTTGAAAAATTATGATCGAGTCATTCGCTGCAATAATAAAAAG
GAATCAGTCGGGAACAACAAAAAAGACAATGTGTGGTCCATATCTGGTGA
CGTAAACTCTCGTACTCGTTTACAAAAACACACATTTACACACGGAGCGG
GAAATAAGAGGCGGAATCGGGGAGGGGCAAGCGTAAGAAGATGGGACACG
GGAGATATTTCGGTAGCAGTAGTAAAAGAGGTTAGACGGGAGAGCGTTGG
CCTAATAATGGCCGAAGCTACTGGTATACAGTATAGCGAACAAGGAATCA
TAAAGGGAGGCGTTGAGGGCTTATATATGAACTGTAGAGAGAGTATATCC
CCTTTGTCACACCTGATCAGAGGTTTTCGTTACAAGTACGATCGATTCCC
CATTGGGAGGACCAATGCGAGTGTTAGGAGGCTAGAAAGGTTATTAGTAG
CGTCACAGGGCTGGATTGGGCGCTTATGTGCAATTTTATAATTACACACA
CACACACGGAATGTTTACTCGAAGAAACTGCGGACCCCCCCCTGTGGTAC
CAAATTATGTATTCAATTTTGGAAGGTAACACCAACCGGGTTACCGCGCG
ACCCG
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Coding sequence (CDS) from alignment at H-elongata_contig78158:2..806+

>mRNA_H-elongata_contig78158.15485.1 ID=mRNA_H-elongata_contig78158.15485.1|Name=mRNA_H-elongata_contig78158.15485.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at H-elongata_contig78158:2..806+ (Himanthalia elongata Himel1 dioecious)
ATGATATCGGGGTATTGGGGGGCTCCTGGTCGAGCTTTGAAAAATTATGA
TCGAGTCATTCGCTGCAATAATAAAAAGGAATCAGTCGGGAACAACAAAA
AAGACAATGTGTGGTCCATATCTGGTGACGTAAACTCTCGTACTCGTTTA
CAAAAACACACATTTACACACGGAGCGGGAAATAAGAGGCGGAATCGGGG
AGGGGCAAGCGTAAGAAGATGGGACACGGGAGATATTTCGGTAGCAGTAG
TAAAAGAGGTTAGACGGGAGAGCGTTGGCCTAATAATGGCCGAAGCTACT
GGTATACAGTATAGCGAACAAGGAATCATAAAGGGAGGCGTTGAGGGCTT
ATATATGAACTGTAGAGAGAGTATATCCCCTTTGTCACACCTGATCAGAG
GTTTTCGTTACAAGTACGATCGATTCCCCATTGGGAGGACCAATGCGAGT
GTTAGGAGGCTAGAAAGGTTATTAGTAGCGTCACAGGGCTGGATTGGGCG
CTTATGTGCAATTTTATAAATGATATCGGGGTATTGGGGGGCTCCTGGTC
GAGCTTTGAAAAATTATGATCGAGTCATTCGCTGCAATAATAAAAAGGAA
TCAGTCGGGAACAACAAAAAAGACAATGTGTGGTCCATATCTGGTGACGT
AAACTCTCGTACTCGTTTACAAAAACACACATTTACACACGGAGCGGGAA
ATAAGAGGCGGAATCGGGGAGGGGCAAGCGTAAGAAGATGGGACACGGGA
GATATTTCGGTAGCAGTAGTAAAAGAGGTTAGACGGGAGAGCGTTGGCCT
AATAATGGCCGAAGCTACTGGTATACAGTATAGCGAACAAGGAATCATAA
AGGGAGGCGTTGAGGGCTTATATATGAACTGTAGAGAGAGTATATCCCCT
TTGTCACACCTGATCAGAGGTTTTCGTTACAAGTACGATCGATTCCCCAT
TGGGAGGACCAATGCGAGTGTTAGGAGGCTAGAAAGGTTATTAGTAGCGT
CACAGGGCTGGATTGGGCGCTTATGTGCAATTTTATAA
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