mRNA_H-elongata_contig78094.15479.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78094.15479.1
Unique NamemRNA_H-elongata_contig78094.15479.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig78094.15479.1 vs. uniprot
Match: T1G7Q5_HELRO (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G7Q5_HELRO)

HSP 1 Score: 68.6 bits (166), Expect = 1.010e-13
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    4 KWRAANEHKYPLIGSVARSVLAVPATSAPSERLFSQSDMIVYDKRSKLAPERLEQLMFL 180
            KW A N  ++P I  VAR  LA+PATS PSE++FS S  I+ ++R++L PE +EQL+FL
Sbjct:   22 KWWADNASRFPTIAKVARKYLAIPATSVPSEQIFSMSGQIMNERRNRLKPEHVEQLVFL 80          
BLAST of mRNA_H-elongata_contig78094.15479.1 vs. uniprot
Match: T1EL11_HELRO (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1EL11_HELRO)

HSP 1 Score: 65.1 bits (157), Expect = 1.120e-12
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   19 NEHKYPLIGSVARSVLAVPATSAPSERLFSQSDMIVYDKRSKLAPERLEQLMFL 180
            N  ++P I  VAR  LA+PATSAPSE++FS S  I+ ++R++L PE +EQL+FL
Sbjct:    1 NASRFPTIAKVARKYLAIPATSAPSEQIFSMSGQIINERRNRLKPEHVEQLVFL 54          
BLAST of mRNA_H-elongata_contig78094.15479.1 vs. uniprot
Match: U9TMC6_RHIID (Uncharacterized protein (Fragment) n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=U9TMC6_RHIID)

HSP 1 Score: 64.7 bits (156), Expect = 1.880e-12
Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    7 WRAANEHKYPLIGSVARSVLAVPATSAPSERLFSQSDMIVYDKRSKLAPERLEQLMFLRGAW 192
            W   N+ ++P++  +AR  LA+PATS PSERLFS++  ++  KR++LAP  LE L+F +  W
Sbjct:    3 WWRINKTRFPVLSKLARKYLAIPATSTPSERLFSEAGNVMTIKRTQLAPNMLENLVFCKKNW 64          
BLAST of mRNA_H-elongata_contig78094.15479.1 vs. uniprot
Match: A0A1X7SKD3_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SKD3_AMPQE)

HSP 1 Score: 66.2 bits (160), Expect = 2.840e-12
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 VKWRAANEHKYPLIGSVARSVLAVPATSAPSERLFSQSDMIVYDKRSKLAPERLEQLMFL 180
            ++W  ANE ++P I  +AR  L VPATS PSER+FS + +++ +KRS L PE  + L+FL
Sbjct:   76 LEWWKANESRFPTIARIARRYLCVPATSVPSERVFSAAGLVINNKRSSLTPENADMLIFL 135          
BLAST of mRNA_H-elongata_contig78094.15479.1 vs. uniprot
Match: A0A1A7XHY4_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7XHY4_9TELE)

HSP 1 Score: 63.2 bits (152), Expect = 1.220e-11
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    7 WRAANEHKYPLIGSVARSVLAVPATSAPSERLFSQSDMIVYDKRSKLAPERLEQLMFL 180
            W   NE ++P +G +A S+L +PATS PSE+LFS +  IV  KR+ L+PE ++ L FL
Sbjct:   18 WWKVNEQRFPTLGKLANSLLCIPATSTPSEQLFSAAGNIVSKKRASLSPENVDMLTFL 75          
BLAST of mRNA_H-elongata_contig78094.15479.1 vs. uniprot
Match: A0A1A7ZCN3_NOTFU (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A7ZCN3_NOTFU)

HSP 1 Score: 63.5 bits (153), Expect = 1.280e-11
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 VKWRAANEHKYPLIGSVARSVLAVPATSAPSERLFSQSDMIVYDKRSKLAPERLEQLMF 177
            ++W  +NE ++P + S+A+S L VPATS PSERLFS +  IV  KR+ L+PE ++ L F
Sbjct:   34 LQWWKSNEARFPSLASLAKSYLCVPATSTPSERLFSSAGNIVSKKRTSLSPEHIDMLTF 92          
BLAST of mRNA_H-elongata_contig78094.15479.1 vs. uniprot
Match: A0A094I505_9PEZI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Pseudogymnoascus sp. VKM F-4519 (FW-2642) TaxID=1420914 RepID=A0A094I505_9PEZI)

HSP 1 Score: 65.9 bits (159), Expect = 1.430e-11
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 VKWRAANEHKYPLIGSVARSVLAVPATSAPSERLFSQSDMIVYDKRSKLAPERLEQLMFLR 183
            +K+ AA +++YP+I ++AR  LA+PATSAPSER+FS    I+  KR++L+PE L  L+ LR
Sbjct:  115 LKYWAAKQYQYPIIAAIARDHLAIPATSAPSERVFSNGANILTKKRNRLSPETLRYLLCLR 175          
BLAST of mRNA_H-elongata_contig78094.15479.1 vs. uniprot
Match: U9U296_RHIID (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=U9U296_RHIID)

HSP 1 Score: 65.1 bits (157), Expect = 2.140e-11
Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    7 WRAANEHKYPLIGSVARSVLAVPATSAPSERLFSQSDMIVYDKRSKLAPERLEQLMFLRGAW 192
            W   N+ ++P++  +AR  LA+PATS PSERLFS++  ++  KR++LAP  LE L+F +  W
Sbjct:  119 WWKTNKTRFPVLSKLARKYLAIPATSTPSERLFSEAGNVMTIKRTQLAPNMLENLVFCKKNW 180          
BLAST of mRNA_H-elongata_contig78094.15479.1 vs. uniprot
Match: A0A1A8M216_9TELE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius pienaari TaxID=704102 RepID=A0A1A8M216_9TELE)

HSP 1 Score: 63.9 bits (154), Expect = 2.670e-11
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    7 WRAANEHKYPLIGSVARSVLAVPATSAPSERLFSQSDMIVYDKRSKLAPERLEQLMFL 180
            W  ANE ++P +  +A S+L +PATS PSERLFS +  IV  KR+ L+PE ++ L FL
Sbjct:   82 WWKANEQRFPTLAKLANSLLCIPATSTPSERLFSAAGNIVSKKRASLSPEHVDMLTFL 139          
BLAST of mRNA_H-elongata_contig78094.15479.1 vs. uniprot
Match: J9LZ29_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9LZ29_ACYPI)

HSP 1 Score: 66.6 bits (161), Expect = 2.680e-11
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    7 WRAANEHKYPLIGSVARSVLAVPATSAPSERLFSQSDMIVYDKRSKLAPERLEQLMFLRG 186
            W  ANE+K+P+I  +A+  L++ ATS PSERLFSQ+  +V  KR++L P R+  L+FL  
Sbjct:  546 WWKANEYKFPVIAKLAKKYLSIVATSVPSERLFSQAGQVVSQKRARLMPSRVNDLLFLNS 605          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78094.15479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
T1G7Q5_HELRO1.010e-1352.54Dimer_Tnp_hAT domain-containing protein n=1 Tax=He... [more]
T1EL11_HELRO1.120e-1253.70Dimer_Tnp_hAT domain-containing protein n=1 Tax=He... [more]
U9TMC6_RHIID1.880e-1245.16Uncharacterized protein (Fragment) n=2 Tax=Rhizoph... [more]
A0A1X7SKD3_AMPQE2.840e-1248.33Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A1A7XHY4_9TELE1.220e-1148.28Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A1A7ZCN3_NOTFU1.280e-1149.15Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
A0A094I505_9PEZI1.430e-1150.82Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ps... [more]
U9U296_RHIID2.140e-1145.16Dimer_Tnp_hAT domain-containing protein n=2 Tax=Rh... [more]
A0A1A8M216_9TELE2.670e-1150.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
J9LZ29_ACYPI2.680e-1148.33Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78094contigH-elongata_contig78094:1888..2079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue9.5e-10
Seed eggNOG ortholog6412.HelroP90391
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931185.7270584-CDS-H-elongata_contig78094:1887..20791622931185.7270584-CDS-H-elongata_contig78094:1887..2079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78094 1888..2079 +
1691679733.1222951-CDS-H-elongata_contig78094:1887..20791691679733.1222951-CDS-H-elongata_contig78094:1887..2079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78094 1888..2079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78094.15479.1prot_H-elongata_contig78094.15479.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78094 1888..2079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78094.15479.1

>prot_H-elongata_contig78094.15479.1 ID=prot_H-elongata_contig78094.15479.1|Name=mRNA_H-elongata_contig78094.15479.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
VKWRAANEHKYPLIGSVARSVLAVPATSAPSERLFSQSDMIVYDKRSKLA
PERLEQLMFLRGAW
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mRNA from alignment at H-elongata_contig78094:1888..2079+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78094.15479.1 ID=mRNA_H-elongata_contig78094.15479.1|Name=mRNA_H-elongata_contig78094.15479.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig78094:1888..2079+ (Himanthalia elongata Himel1 dioecious)
GTAAAGTGGCGGGCGGCAAACGAGCACAAGTATCCGCTCATTGGCAGCGT AGCTCGATCAGTCCTGGCTGTTCCTGCTACATCAGCCCCATCTGAGCGCC TATTCTCACAGAGTGATATGATTGTTTACGACAAAAGGAGCAAGCTAGCA CCTGAGCGTCTAGAGCAGCTGATGTTTTTGCGTGGCGCTTGG
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Coding sequence (CDS) from alignment at H-elongata_contig78094:1888..2079+

>mRNA_H-elongata_contig78094.15479.1 ID=mRNA_H-elongata_contig78094.15479.1|Name=mRNA_H-elongata_contig78094.15479.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig78094:1888..2079+ (Himanthalia elongata Himel1 dioecious)
GTAAAGTGGCGGGCGGCAAACGAGCACAAGTATCCGCTCATTGGCAGCGT
AGCTCGATCAGTCCTGGCTGTTCCTGCTACATCAGCCCCATCTGAGCGCC
TATTCTCACAGAGTGATATGATTGTTTACGACAAAAGGAGCAAGCTAGCA
CCTGAGCGTCTAGAGCAGCTGATGTTTTTGCGTGGCGCTTGGGTAAAGTG
GCGGGCGGCAAACGAGCACAAGTATCCGCTCATTGGCAGCGTAGCTCGAT
CAGTCCTGGCTGTTCCTGCTACATCAGCCCCATCTGAGCGCCTATTCTCA
CAGAGTGATATGATTGTTTACGACAAAAGGAGCAAGCTAGCACCTGAGCG
TCTAGAGCAGCTGATGTTTTTGCGTGGCGCTTGG
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