mRNA_H-elongata_contig78040.15476.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78040.15476.1
Unique NamemRNA_H-elongata_contig78040.15476.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: A0A6H5J5G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5G9_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 4.480e-49
Identity = 86/108 (79.63%), Postives = 94/108 (87.04%), Query Frame = 1
Query:    1 QSLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILGVAAGVEEVTAIATLQTILGAEHARAKLVRLPQ 324
            QSLETT+ + A   ME H+G  DLVVGAALTGHAFQGG+TV+L GVTTPWNTLALWDV KLAK+GFLGVAEGL+ GV AGVEEVTAIA LQ +LGAEHARAKLVRLPQ
Sbjct:  170 QSLETTVGKDAVSGMEAHMGPADLVVGAALTGHAFQGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQALLGAEHARAKLVRLPQ 277          
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: D7FN87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN87_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 8.940e-49
Identity = 85/111 (76.58%), Postives = 97/111 (87.39%), Query Frame = 1
Query:    1 QSLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILGVAAGVEEVTAIATLQTILGAEHARAKLVRLPQVKF 333
            QSLETT+ + A   ME ++G  DLVVGAALTGHAF+GG+TV+L GVTTPWNTLALWDV KLAK+GFLGVAEGL+ GV AGVEEVTAIA LQ +LGAEHARAKLVRLPQV++
Sbjct:  181 QSLETTVGKDAVSGMEAYMGPADLVVGAALTGHAFRGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGVEEVTAIAALQVLLGAEHARAKLVRLPQVRW 291          
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: A0A7S2V0C8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0C8_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.740e-22
Identity = 52/111 (46.85%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    1 QSLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILGVAAGVEEVTAIATLQTILGAEHARAKLVRLPQVKF 333
            QSLE  +       ++  +   D++VGAAL GH F  G++V+  G T PWNTLALWD  +L+  GF+ ++EGL+ GV+AGVEE TA+  LQ  L  E + AKLVRL Q+++
Sbjct:   54 QSLEMAVCREDYEELKAQMEPGDVLVGAALPGHIFSPGESVEAGGRTCPWNTLALWDTARLSLTGFIPLSEGLLPGVSAGVEEATALTLLQH-LKPETSGAKLVRLSQIEW 163          
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: A0A7S2TZH8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TZH8_9EUKA)

HSP 1 Score: 94.4 bits (233), Expect = 5.280e-22
Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 1
Query:    1 QSLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILGVAAGVEEVTAIATLQTILGAEHARAKLVRLP 321
            QS+E       +RV+  +L  + LVVGAALT H F+ G   +L+G+T+PWNTLA+WDV KLA   FLG+++G++ GV  GVEEV AI TL+  L  + + AKL+ LP
Sbjct:    5 QSVEVMASPRISRVLVEYLQENTLVVGAALTDHLFKPGLQ-ELNGLTSPWNTLAVWDVSKLAHTNFLGISDGVVPGVQGGVEEVAAI-TLRQALHPKTSMAKLILLP 109          
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: A0A1Z5K272_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K272_FISSO)

HSP 1 Score: 93.2 bits (230), Expect = 1.150e-20
Identity = 53/114 (46.49%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    4 SLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILG----VAAGVEEVTAIATLQTILGAEHARAKLVRLPQVKF 333
            S ET ++    + +  HL  D LVVGA L GH  +G     L G T+PWNTLA+WD+ KL+  GF  V++GL+       + GVEEV AIA LQ +LG E+A+AKLV L  V +
Sbjct:  133 SAETVVDRDGIQELLAHLTPDTLVVGARLPGHVVRGECVTLLSGTTSPWNTLAVWDLHKLSLTGFQLVSDGLLTDDKEEPSFGVEEVVAIALLQKLLGTENAKAKLVTLKHVDW 246          
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: F4NXG8_BATDJ (Uncharacterized protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NXG8_BATDJ)

HSP 1 Score: 91.7 bits (226), Expect = 2.360e-20
Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    1 QSLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILGVAAGVEEVTAIATLQTILGAEHARAKLVRLPQ 324
            QS+E  +  +    M      D LVVG AL+GHAF  GK  +L+GVTTPWNTLALW V KL  +GFL VAEG    V  GVEEV+AIA  Q ++   HA+A L+R+ +
Sbjct:  111 QSVEAVVSANEIHTMISWFDQDTLVVGKALSGHAFTVGKQ-RLNGVTTPWNTLALWAVSKLKCLGFLMVAEGS-EDVQGGVEEVSAIAVFQKLVSPNHAKAILLRMSE 216          
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: A0A835Z311_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z311_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.420e-20
Identity = 51/94 (54.26%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    1 QSLETTLEESAARVMEVHLG-TDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILGVAAGVEEVTAIATLQTI 279
            QSLET    +    +E  L    DLVVGAAL GH F  G+  ++ G TTPWNTLALW V +LA++GFL V++G + GVAAGVEEV AI+ LQ +
Sbjct:  111 QSLETAATPALVSALEAELDPAQDLVVGAALPGHDFSPGEH-EITGTTTPWNTLALWSVPQLARLGFLTVSDGAVAGVAAGVEEVAAISLLQQL 203          
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: A0A507BTI1_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BTI1_9FUNG)

HSP 1 Score: 89.0 bits (219), Expect = 2.680e-19
Identity = 56/108 (51.85%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    1 QSLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILGVAAGVEEVTAIATLQTILGAEHARAKLVRLPQ 324
            QS+E         V+  HL  D LVVG     H FQ   +  LDGVT PWNTLA+W V KLA  GFL VAEG    VA GVEEV+ IA LQTIL  + ++AKL+R+ Q
Sbjct:   98 QSVEAVATREIVDVLISHLSEDTLVVGKCFKDHRFQP-PSQPLDGVTAPWNTLAIWSVKKLALTGFLLVAEGF-HDVAGGVEEVSVIALLQTILP-DSSKAKLIRMKQ 202          
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: A0A507DRK0_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DRK0_9FUNG)

HSP 1 Score: 88.2 bits (217), Expect = 2.740e-19
Identity = 55/106 (51.89%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 QSLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILGVAAGVEEVTAIATLQTILGAEHARAKLVRL 318
            QS+E +  ++   V++ +L  D LVVG     H FQ G  V L+GVT PWNTLALW V KLA  GFL VAEGL  GVA GVEEV+ IA  QTI      +AKL+++
Sbjct:   64 QSVEASASKALLDVLQSYLDEDTLVVGKCFKDHQFQCGPRV-LNGVTAPWNTLALWSVKKLALTGFLLVAEGL-YGVAGGVEEVSVIALHQTIRPTSS-KAKLIKI 166          
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Match: A0A1Z5KL79_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL79_FISSO)

HSP 1 Score: 89.4 bits (220), Expect = 3.460e-19
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    4 SLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPWNTLALWDVGKLAKVGFLGVAEGLILG----VAAGVEEVTAIATLQTILGAEHARAKLVRLPQVKF 333
            S ET  + +  + +  HL  D LVVG  L GHA +G     L G T+PWNTLA+W++ KL+  GF  V++GL+       + GVEEV AIA LQ +LG E+A+AKLV L  V +
Sbjct:  136 SAETVADHNDIQELLSHLTPDTLVVGGRLPGHAVRGECVTLLSGTTSPWNTLAVWNLHKLSLTGFQLVSDGLLTDDKEEPSFGVEEVVAIALLQKLLGTENAKAKLVSLKHVDW 249          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78040.15476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J5G9_9PHAE4.480e-4979.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN87_ECTSI8.940e-4976.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V0C8_9STRA3.740e-2246.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2TZH8_9EUKA5.280e-2249.53Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A1Z5K272_FISSO1.150e-2046.49Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
F4NXG8_BATDJ2.360e-2050.93Uncharacterized protein n=2 Tax=Batrachochytrium d... [more]
A0A835Z311_9STRA3.420e-2054.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A507BTI1_9FUNG2.680e-1951.85Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A507DRK0_9FUNG2.740e-1951.89Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]
A0A1Z5KL79_FISSO3.460e-1945.61Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78040contigH-elongata_contig78040:128..1154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.2
Seed ortholog evalue4.5e-39
Seed eggNOG ortholog2880.D7FN87
EggNOG OGs28KV4@1,2QTBH@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_003370.1
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931185.5158808-CDS-H-elongata_contig78040:127..2661622931185.5158808-CDS-H-elongata_contig78040:127..266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78040 128..266 -
1691679733.0063183-CDS-H-elongata_contig78040:127..2661691679733.0063183-CDS-H-elongata_contig78040:127..266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78040 128..266 -
1622931185.5299284-CDS-H-elongata_contig78040:960..11541622931185.5299284-CDS-H-elongata_contig78040:960..1154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78040 961..1154 -
1691679733.0249543-CDS-H-elongata_contig78040:960..11541691679733.0249543-CDS-H-elongata_contig78040:960..1154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78040 961..1154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78040.15476.1prot_H-elongata_contig78040.15476.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78040 128..1154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78040.15476.1

>prot_H-elongata_contig78040.15476.1 ID=prot_H-elongata_contig78040.15476.1|Name=mRNA_H-elongata_contig78040.15476.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
QSLETTLEESAARVMEVHLGTDDLVVGAALTGHAFQGGKTVQLDGVTTPW
NTLALWDVGKLAKVGFLGVAEGLILGVAAGVEEVTAIATLQTILGAEHAR
AKLVRLPQVKF
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mRNA from alignment at H-elongata_contig78040:128..1154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78040.15476.1 ID=mRNA_H-elongata_contig78040.15476.1|Name=mRNA_H-elongata_contig78040.15476.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1027bp|location=Sequence derived from alignment at H-elongata_contig78040:128..1154- (Himanthalia elongata Himel1 dioecious)
CAGTCGTTGGAAACAACACTCGAGGAAAGCGCCGCGCGTGTTATGGAGGT TCACCTTGGAACGGACGATCTGGTGGTAGGCGCTGCGCTGACGGGACACG CTTTCCAAGGAGGTAAAACAGTTCAGCTTGACGGGGTCACGACGCCGTGG AATACACTCGCTCTGTGGGACGTGGGGAAGCTCGCCAAAGTAGGGTGAGG AAGACGGACCGGCCTTGGATCCCTTATTGTGCGTTTATCTTGTTATCGTT GAGCCTTTTAAAATTAATTTGACGGTGTTGTTCTAGAAGGAAACTACATA ACCTATACGCCACGACTCGGTGTCTATGAATGGTATATGGTGGCGCTAGA ATCGTGAATCGTGAGCCATGTCATAACAGACAAGGATGAGCCCTCTGTCT ACAGCCCAAAGACAGTTTGCATATTAATCCCCCACGTACAACATAATTGT CTATTATCTAAACGACACGAAAGTGCTGATAGGAGCGTCACCTCACGCGA GCGGCAGTAAGGGGCAACCGAAGCGGAAACTGCTACTCGTTGTCGAGAGG CGTTTTTTCCTTTAAAAACAAATGAACTAATTCAAATCCGAACACCCACG CCTTTCCTTTTCCTAGACATTAACTACTAGAACGTTGAATACGCCGTGAA TTCGTCACCCTCCATGAACGACCTGATCCATAGCTGTTTTTTATGCGTAC TATACATCGAAGCGCTATACTTCGCAGTACCAGGTTGAAGACTACTATTA TAGCTGAGTTATTAGTAACATGGAGTAGGAGCTACTCTTCGTGTATTCTG AAGAAGTTATCTGTACAATGTTGTCCAAAAGGTATTGTCTTGTGGAATAA GAATTAGTATTAGACCATTGCTCCACTATGTTGAACAGATTTTTGGGGGT TGCAGAGGGTCTAATTCTCGGAGTGGCCGCTGGAGTGGAGGAAGTAACCG CCATCGCAACGCTTCAGACCATTCTAGGGGCCGAGCACGCCCGCGCCAAG CTCGTCCGATTACCTCAGGTGAAGTTT
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Coding sequence (CDS) from alignment at H-elongata_contig78040:128..1154-

>mRNA_H-elongata_contig78040.15476.1 ID=mRNA_H-elongata_contig78040.15476.1|Name=mRNA_H-elongata_contig78040.15476.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig78040:128..1154- (Himanthalia elongata Himel1 dioecious)
CAGTCGTTGGAAACAACACTCGAGGAAAGCGCCGCGCGTGTTATGGAGGT
TCACCTTGGAACGGACGATCTGGTGGTAGGCGCTGCGCTGACGGGACACG
CTTTCCAAGGAGGTAAAACAGTTCAGCTTGACGGGGTCACGACGCCGTGG
AATACACTCGCTCTGTGGGACGTGGGGAAGCTCGCCAAAGTAGGCAGTCG
TTGGAAACAACACTCGAGGAAAGCGCCGCGCGTGTTATGGAGGTTCACCT
TGGAACGGACGATCTGGTGGTAGGCGCTGCGCTGACGGGACACGCTTTCC
AAGGAGGTAAAACAGTTCAGCTTGACGGGGTCACGACGCCGTGGAATACA
CTCGCTCTGTGGGACGTGGGGAAGCTCGCCAAAGTAGGATTTTTGGGGGT
TGCAGAGGGTCTAATTCTCGGAGTGGCCGCTGGAGTGGAGGAAGTAACCG
CCATCGCAACGCTTCAGACCATTCTAGGGGCCGAGCACGCCCGCGCCAAG
CTCGTCCGATTACCTCAGGTGAAGTTTATTTTTGGGGGTTGCAGAGGGTC
TAATTCTCGGAGTGGCCGCTGGAGTGGAGGAAGTAACCGCCATCGCAACG
CTTCAGACCATTCTAGGGGCCGAGCACGCCCGCGCCAAGCTCGTCCGATT
ACCTCAGGTGAAGTTT
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