mRNA_H-elongata_contig78004.15470.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78004.15470.1
Unique NamemRNA_H-elongata_contig78004.15470.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.350e-16
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:    4 LWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPASHG 234
            LWHRR+GH+N ++LD +++   NG+     + DC  CA+GK  +  HPK+A   D+K PFQLV+ D +GPF P + G
Sbjct:  528 LWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEA-TYDVKRPFQLVFVDTLGPFTPTALG 603
[Close]
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 6.410e-16
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAP 222
            +LWHRRLGH++ R+LD +++ D NG+ + G +  CDVCA+GK  +  HPKKA   D+   FQ V  DLMGP +P
Sbjct:   38 DLWHRRLGHIDSRSLDVLRKIDDNGVDYTGPMETCDVCAIGKSSQRPHPKKA-TYDVSRHFQ-VSTDLMGPISP 109
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BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.200e-15
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:    1 ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPASHG 234
            +LWHRR+GH+N ++LD ++++  +GI + G + DC  C +GK  +  HPK A    +  PFQLV+ D +GPF P + G
Sbjct:   45 DLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALG 121
[Close]
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.200e-15
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:    1 ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPASHG 234
            +LWHRR+GH+N ++LD ++++  +GI + G + DC  C +GK  +  HPK A    +  PFQLV+ D +GPF P + G
Sbjct:  574 DLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALG 650
[Close]
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.210e-15
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:    1 ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPASHG 234
            +LWHRR+GH+N ++LD ++++  +GI + G + DC  C +GK  +  HPK A    +  PFQLV+ D +GPF P + G
Sbjct:  696 DLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALG 772
[Close]
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.210e-15
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:    1 ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPASHG 234
            +LWHRR+GH+N ++LD ++++  +GI + G + DC  C +GK  +  HPK A    +  PFQLV+ D +GPF P + G
Sbjct:  574 DLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALG 650
[Close]
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.710e-14
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPAS 228
            +LWHRR+GH+N ++LD +++   NG+ + G + DC VC +GK  +  HPK+A    ++ PFQ V  D +GPF P +
Sbjct:  642 DLWHRRMGHINGKSLDVLRKEPVNGVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLR-PFQHVSVDTLGPFTPTA 716
[Close]
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.710e-14
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:    1 ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPASHG 234
            +LWHRR+GH+N ++LD ++++  +GI + G + DC  C +GK  +  HPK A    +  PFQLV+ D  GPF   + G
Sbjct:  479 DLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTFGPFTSTTLG 555
[Close]
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 9.360e-14
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    1 ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPASHG 234
            +LWHRR+GH+N ++LD +++   NG+ + G + DC VC +GK  +  HPK+     ++ PFQ V  D +GPF P + G
Sbjct:  287 DLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLR-PFQHVSVDTLGPFTPTALG 363
[Close]
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.380e-13
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:   10 HRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPKKAENADIKAPFQLVYADLMGPFAPASHG 234
            HRRLGHLN R++  +++++ N + F  ++  CD+CA+ K  +LAHPKK    +  AP  LVY D+MG   P + G
Sbjct:  110 HRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSR-ETTAPMLLVYTDIMGKTTPLAKG 183
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78004.15470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBV6_9PHAE1.350e-1645.45Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KBU1_9PHAE6.410e-1650.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KNH5_9PHAE1.200e-1542.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJN3_9PHAE1.200e-1542.31Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE1.210e-1542.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.210e-1542.31Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JKW9_9PHAE2.710e-1442.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYB5_9PHAE2.710e-1441.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXM1_9PHAE9.360e-1441.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT61_9PHAE2.380e-1342.67Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78004contigH-elongata_contig78004:644..877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.2
Seed ortholog evalue2.4e-07
Seed eggNOG ortholog7425.NV21130-PA
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BGB6@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931184.9883356-CDS-H-elongata_contig78004:643..8771622931184.9883356-CDS-H-elongata_contig78004:643..877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78004 644..877 +
1691679732.8170884-CDS-H-elongata_contig78004:643..8771691679732.8170884-CDS-H-elongata_contig78004:643..877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78004 644..877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78004.15470.1prot_H-elongata_contig78004.15470.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78004 644..877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78004.15470.1

>prot_H-elongata_contig78004.15470.1 ID=prot_H-elongata_contig78004.15470.1|Name=mRNA_H-elongata_contig78004.15470.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
ELWHRRLGHLNKRTLDFIQRRDGNGITFDGTLADCDVCAVGKIHKLAHPK
KAENADIKAPFQLVYADLMGPFAPASHG
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mRNA from alignment at H-elongata_contig78004:644..877+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78004.15470.1 ID=mRNA_H-elongata_contig78004.15470.1|Name=mRNA_H-elongata_contig78004.15470.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig78004:644..877+ (Himanthalia elongata Himel1 dioecious)
GAACTATGGCACCGACGGCTAGGTCACCTGAATAAAAGGACCCTGGATTT
TATCCAACGGCGTGATGGTAACGGCATCACCTTCGACGGGACCTTAGCAG
ACTGCGACGTTTGTGCTGTGGGGAAAATTCATAAATTGGCTCACCCCAAG
AAGGCTGAAAACGCCGATATTAAGGCGCCCTTCCAGCTAGTGTACGCAGA
CTTGATGGGACCATTTGCTCCGGCATCTCACGGA
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Coding sequence (CDS) from alignment at H-elongata_contig78004:644..877+

>mRNA_H-elongata_contig78004.15470.1 ID=mRNA_H-elongata_contig78004.15470.1|Name=mRNA_H-elongata_contig78004.15470.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig78004:644..877+ (Himanthalia elongata Himel1 dioecious)
GAACTATGGCACCGACGGCTAGGTCACCTGAATAAAAGGACCCTGGATTT
TATCCAACGGCGTGATGGTAACGGCATCACCTTCGACGGGACCTTAGCAG
ACTGCGACGTTTGTGCTGTGGGGAAAATTCATAAATTGGCTCACCCCAAG
AAGGCTGAAAACGCCGATATTAAGGCGCCCTTCCAGCTAGTGTACGCAGA
CTTGATGGGACCATTTGCTCCGGCATCTCACGGAGAACTATGGCACCGAC
GGCTAGGTCACCTGAATAAAAGGACCCTGGATTTTATCCAACGGCGTGAT
GGTAACGGCATCACCTTCGACGGGACCTTAGCAGACTGCGACGTTTGTGC
TGTGGGGAAAATTCATAAATTGGCTCACCCCAAGAAGGCTGAAAACGCCG
ATATTAAGGCGCCCTTCCAGCTAGTGTACGCAGACTTGATGGGACCATTT
GCTCCGGCATCTCACGGA
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