mRNA_H-elongata_contig7800.15469.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7800.15469.1
Unique NamemRNA_H-elongata_contig7800.15469.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7800.15469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7800contigH-elongata_contig7800:7571..8046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size248
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7800.15469.1prot_H-elongata_contig7800.15469.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7800 7571..7980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931184.8089066-CDS-H-elongata_contig7800:7570..76101622931184.8089066-CDS-H-elongata_contig7800:7570..7610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7800 7571..7610 -
1691679732.7577446-CDS-H-elongata_contig7800:7570..76101691679732.7577446-CDS-H-elongata_contig7800:7570..7610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7800 7571..7610 -
1622931184.8259125-CDS-H-elongata_contig7800:7840..79801622931184.8259125-CDS-H-elongata_contig7800:7840..7980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7800 7841..7980 -
1691679732.766479-CDS-H-elongata_contig7800:7840..79801691679732.766479-CDS-H-elongata_contig7800:7840..7980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7800 7841..7980 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931184.8428748-UTR-H-elongata_contig7800:7980..80461622931184.8428748-UTR-H-elongata_contig7800:7980..8046Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7800 7981..8046 -
1691679732.7744544-UTR-H-elongata_contig7800:7980..80461691679732.7744544-UTR-H-elongata_contig7800:7980..8046Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7800 7981..8046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7800.15469.1

>prot_H-elongata_contig7800.15469.1 ID=prot_H-elongata_contig7800.15469.1|Name=mRNA_H-elongata_contig7800.15469.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
MDEFRSPAFAPSRRGEAPQDGSSAYVGDRFQPSTLSERIELLDQETRSCW
RRVEKLEDEE
back to top

mRNA from alignment at H-elongata_contig7800:7571..8046-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7800.15469.1 ID=mRNA_H-elongata_contig7800.15469.1|Name=mRNA_H-elongata_contig7800.15469.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=476bp|location=Sequence derived from alignment at H-elongata_contig7800:7571..8046- (Himanthalia elongata Himel1 dioecious)
GCCAGCCGGTCGCACAGGAGTGTACGCGACGTTTAAGTGTGGTGGGGGTT
GAGGGATCGCTCCTATATGGACGAGTTCCGGTCTCCTGCTTTCGCACCGT
CTCGACGTGGCGAAGCGCCTCAAGATGGTAGCAGCGCGTACGTCGGAGAC
AGATTCCAGCCTTCCACCCTGAGCGAGCGCATAGAATTACTTGACCAAGA
GACAAGGTATTTATCTCGCAAATTCGGGGTTTGATTCTACAGAGAGAAAA
GCGGACCACCGATCTTCCGCACATACGCAATAATATTGTTCGCCTGATGT
CGTGGCCGCCCGTGTACAATTAATGCGTCGAACTCTAGTTTTGACACGTT
TGTTTGCGTTACTTCACACATAATCGTTCATTGTGCCATATTTTTTAATA
ATATTTTATCTCTGTATGATTCGATTAACCGCGTAGATCATGCTGGAGAC
GTGTGGAAAAGCTAGAGGACGAAGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7800:7571..8046-

>mRNA_H-elongata_contig7800.15469.1 ID=mRNA_H-elongata_contig7800.15469.1|Name=mRNA_H-elongata_contig7800.15469.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig7800:7571..8046- (Himanthalia elongata Himel1 dioecious)
ATGGACGAGTTCCGGTCTCCTGCTTTCGCACCGTCTCGACGTGGCGAAGC
GCCTCAAGATGGTAGCAGCGCGTACGTCGGAGACAGATTCCAGCCTTCCA
CCCTGAGCGAGCGCATAGAATTACTTGACCAAGAGACAAGATGGACGAGT
TCCGGTCTCCTGCTTTCGCACCGTCTCGACGTGGCGAAGCGCCTCAAGAT
GGTAGCAGCGCGTACGTCGGAGACAGATTCCAGCCTTCCACCCTGAGCGA
GCGCATAGAATTACTTGACCAAGAGACAAGATCATGCTGGAGACGTGTGG
AAAAGCTAGAGGACGAAGAGATCATGCTGGAGACGTGTGGAAAAGCTAGA
GGACGAAGAG
back to top