mRNA_H-elongata_contig77899.15464.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77899.15464.1
Unique NamemRNA_H-elongata_contig77899.15464.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77899.15464.1 vs. uniprot
Match: D8LQL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQL5_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.360e-35
Identity = 67/107 (62.62%), Postives = 73/107 (68.22%), Query Frame = 1 
Query:    4 DIKWTAGPGPAPLPYSKRAREAMGYSDHDKPWAHPDPTPPPIAEQLGVGGD-----LREGNFRTMFFLGVFVVGLILWVYRRVVYRDRTPFSHVPTTP--SHEAKVS 303
            DIKWTAGPGPAPLPYSKRAREAMG +D DKPWAHPDP   P AE  G GG      L EG  RT FFL V  +   +WVYR+VV RD +PF HV  TP  S + KVS
Sbjct:    5 DIKWTAGPGPAPLPYSKRAREAMGVTDDDKPWAHPDP---PAAESWGFGGGGESDTLTEGRLRTNFFLIVLSIIFAIWVYRKVVKRDHSPFFHVSPTPPQSEDVKVS 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77899.15464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQL5_ECTSI2.360e-3562.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77899contigH-elongata_contig77899:1806..2875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_006120.1
Exons2
Model size303
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931184.241565-CDS-H-elongata_contig77899:1805..18921622931184.241565-CDS-H-elongata_contig77899:1805..1892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77899 1806..1892 +
1691679732.5544577-CDS-H-elongata_contig77899:1805..18921691679732.5544577-CDS-H-elongata_contig77899:1805..1892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77899 1806..1892 +
1622931184.2613773-CDS-H-elongata_contig77899:2659..28751622931184.2613773-CDS-H-elongata_contig77899:2659..2875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77899 2660..2875 +
1691679732.564092-CDS-H-elongata_contig77899:2659..28751691679732.564092-CDS-H-elongata_contig77899:2659..2875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77899 2660..2875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77899.15464.1prot_H-elongata_contig77899.15464.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77899 1806..2875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77899.15464.1

>prot_H-elongata_contig77899.15464.1 ID=prot_H-elongata_contig77899.15464.1|Name=mRNA_H-elongata_contig77899.15464.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MDIKWTAGPGPAPLPYSKRAREAMGYSDHDKPWAHPDPTPPPIAEQLGVG
GDLREGNFRTMFFLGVFVVGLILWVYRRVVYRDRTPFSHVPTTPSHEAKV
S
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mRNA from alignment at H-elongata_contig77899:1806..2875+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77899.15464.1 ID=mRNA_H-elongata_contig77899.15464.1|Name=mRNA_H-elongata_contig77899.15464.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1070bp|location=Sequence derived from alignment at H-elongata_contig77899:1806..2875+ (Himanthalia elongata Himel1 dioecious)
ATGGATATCAAATGGACGGCTGGACCTGGACCAGCGCCGCTACCGTACTC
GAAGCGTGCGAGAGAAGCAATGGGATATTCTGATCATGTGAGGTGTGGTT
TATGCATGCATGTGATCGCTCAATCAACTGAGGCAAGTACATCAGGTAAC
TCAACCGCAATAATAGGCGTATATTGACTGTCAGTTTAGGAGCATTTAGT
ACTGGATCAAGTACTCTACCTGCAAACAGTATTATTTTCATTAAAAAACA
TATGAGCTCATTAAGACCCTTCGAACATCCACGCCGGTATAGTCCAGGGG
ACCAACTATCGTCAGGTCCGAATGTAGACGTTACTGCATTTAATCACAAA
ATCGGCATATATGTGATTATTCGTGTTCCCCGGTGATTGTGAATTCATTG
GGTCAACGGTTAATAATGTCAGTAATCCCGTCATTGTCCCATGCACTTAC
ATTATTCATCATATGGGGACTATGACCAAACAAGAGTACTAGAGCCTAGA
GAGTGAATTGTGGTTAAGAAGGGTTAAGCATGTTCAGCATATGGGTGCAT
TATTCATGGTCCAAATATTGGACACTTCCTCAAAGCCAATCAAATGTCGT
ATTTTTACAACTGCACGTAAGTTCTACTCTTGGAGGATACTGCCCTCTAT
CTCATATTATATATTATAGAACAGTTATTGCGATGATTGCGATGCTGTGC
CACCCTACCTACATCTCTATCTCCAGTAACTACAGCATCAGGATGGATAC
ACCTTGTGCCTTGAGCGCTTTCCAGGAGCTGACACCTCGTGAACGCCTTC
TGCATCTTGAATATTTCTTCGGTAATATGTGATGACCAAACAAACATGCC
GCAGGATAAACCATGGGCGCACCCGGATCCGACGCCCCCGCCAATAGCGG
AGCAGCTGGGAGTCGGCGGTGATTTGAGAGAGGGAAATTTTCGAACCATG
TTTTTCCTCGGCGTGTTCGTTGTTGGTTTGATTCTGTGGGTCTACCGGAG
AGTCGTCTATAGGGATCGGACACCGTTTTCCCACGTGCCGACTACCCCTT
CCCATGAGGCCAAGGTAAGC
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Coding sequence (CDS) from alignment at H-elongata_contig77899:1806..2875+

>mRNA_H-elongata_contig77899.15464.1 ID=mRNA_H-elongata_contig77899.15464.1|Name=mRNA_H-elongata_contig77899.15464.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig77899:1806..2875+ (Himanthalia elongata Himel1 dioecious)
ATGGATATCAAATGGACGGCTGGACCTGGACCAGCGCCGCTACCGTACTC
GAAGCGTGCGAGAGAAGCAATGGGATATTCTGATCATATGGATATCAAAT
GGACGGCTGGACCTGGACCAGCGCCGCTACCGTACTCGAAGCGTGCGAGA
GAAGCAATGGGATATTCTGATCATGATAAACCATGGGCGCACCCGGATCC
GACGCCCCCGCCAATAGCGGAGCAGCTGGGAGTCGGCGGTGATTTGAGAG
AGGGAAATTTTCGAACCATGTTTTTCCTCGGCGTGTTCGTTGTTGGTTTG
ATTCTGTGGGTCTACCGGAGAGTCGTCTATAGGGATCGGACACCGTTTTC
CCACGTGCCGACTACCCCTTCCCATGAGGCCAAGGTAAGCGATAAACCAT
GGGCGCACCCGGATCCGACGCCCCCGCCAATAGCGGAGCAGCTGGGAGTC
GGCGGTGATTTGAGAGAGGGAAATTTTCGAACCATGTTTTTCCTCGGCGT
GTTCGTTGTTGGTTTGATTCTGTGGGTCTACCGGAGAGTCGTCTATAGGG
ATCGGACACCGTTTTCCCACGTGCCGACTACCCCTTCCCATGAGGCCAAG
GTAAGC
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