mRNA_H-elongata_contig77877.15462.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77877.15462.1
Unique NamemRNA_H-elongata_contig77877.15462.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77877.15462.1 vs. uniprot
Match: A0A6H5KAD5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD5_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 9.130e-23
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 1 
Query:   31 HMYAIIGLVILMGLQPFGEIRCHWETHVEDDFPRVRKCLTRNFFLLVYCRYIHMASKQDKK----PGEDG--YDILHHIRGLEYILNKAWSTCCCPRRWVAFDEQMDVNKGRFGKVIRRYLPNKPIKCG 399
            H+  +IG+ I MGL     +R HW     D++P V+KC++R+ F L+YCR++H +     +     GE+   YD   HIR LE ILN AW+       W+++DEQM     ++   +  Y P KPIK G
Sbjct:  129 HIDGMIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKWHIRELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHG 257
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BLAST of mRNA_H-elongata_contig77877.15462.1 vs. uniprot
Match: A0A6H5KMJ3_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ3_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.040e-22
Identity = 48/129 (37.21%), Postives = 70/129 (54.26%), Query Frame = 1 
Query:   31 HMYAIIGLVILMGLQPFGEIRCHWETHVEDDFPRVRKCLTRNFFLLVYCRYIHMASKQDKK----PGEDG--YDILHHIRGLEYILNKAWSTCCCPRRWVAFDEQMDVNKGRFGKVIRRYLPNKPIKCG 399
            H+  +IG+ I MGL     +R HW     D++P V+KC+ R+ F L+YCR++H +     +     GE+   YD   HIR LE ILN AW+       W+++DEQM     ++   +  Y P KPIK G
Sbjct:   29 HIDGMIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMPRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKWHIRELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHG 157
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BLAST of mRNA_H-elongata_contig77877.15462.1 vs. uniprot
Match: A0A6H5JER6_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 8.520e-22
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 1 
Query:   31 HMYAIIGLVILMGLQPFGEIRCHWETHVEDDFPRVRKCLTRNFFLLVYCRYIHMASKQDKK----PGEDG--YDILHHIRGLEYILNKAWSTCCCPRRWVAFDEQMDVNKGRFGKVIRRYLPNKPIKCG 399
            H+  +IG+ I MGL     +R HW     D++P V+KC++R+ F L+YCR++H +     +     GE+   YD   HIR LE ILN AW+       W+++DEQM     ++   +  Y P KPIK G
Sbjct:  129 HIDGMIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKWHIRELEEILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHG 257
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BLAST of mRNA_H-elongata_contig77877.15462.1 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 5.920e-18
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:   31 HMYAIIGLVILMGLQPFGEIRCHWETHVEDDFPRVRKCLTRNFFLLVYCRYIHMASKQDKK----PGEDG--YDILHHIRGLEYILNKAWSTCCCPRRWVAFDEQMDVNKGRFGKVIR 366
            H+  +IG+ I MGL     +R HW     D++P V+KC++R+ F L+YCR++H +     +     GE+   YD   HIR LE ILN AW+T      W+++DEQM     ++ + ++
Sbjct:   29 HIDGMIGIFITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEENPDYDSKRHIRELEEILNTAWATNVECGNWLSYDEQMIKTVSKYEQGMK 146
[Close]
BLAST of mRNA_H-elongata_contig77877.15462.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.720e-16
Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 1 
Query:   88 IRCHWETHVEDDFPRVRKCLTRNFFLLVYCRYIHMA--------SKQDKKPGEDGYDILHHIRGLEYILNKAWSTCCCPRRWVAFDEQMDVNKGRFGKVIRRYLPNKPIKCG 399
            +R HW   + DD+P VRKC++R+ F L+Y R+IH +        + +DK P  + +D   HIR LE ILN AW+       W+ +DEQM      F   + R  P +PI  G
Sbjct:  665 MRKHWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPRWTGEDKTPNPE-FDSKWHIRELEDILNNAWTENMDFNEWLCYDEQMMRTVSTFAHYLMRDNPKEPITHG 775
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BLAST of mRNA_H-elongata_contig77877.15462.1 vs. uniprot
Match: UPI00156913B6 (piggyBac transposable element-derived protein 4-like n=1 Tax=Aphantopus hyperantus TaxID=2795564 RepID=UPI00156913B6)

HSP 1 Score: 54.7 bits (130), Expect = 5.000e-6
Identity = 34/120 (28.33%), Postives = 59/120 (49.17%), Query Frame = 1 
Query:    1 KWPDNGITMNHMYAIIGLVILMGLQPFGEIRCHWETHVEDDFPRVRKCLTRNFFLLVYCRYIHMASKQDKKPGEDGYDILHHIRGLEYILNKAWSTCCCPRRWVAFDEQMDVNKGRFGKV 360
            KW +  +  N +Y +I ++ILMG+   G +  +W T V    P  RK +T N F+L+  +++H A   +K         L  I+ +   LN+ +     PR+ ++ DE + + KG    V
Sbjct:  161 KWVETSV--NELYRLISIIILMGMCVRGRVDEYWSTGVLG-MPEFRKRMTLNRFILLM-KFLHFADN-NKVTSHGSQRKLAKIKPVIDHLNQKFKAAYTPRQELSLDESLLLWKGHLSWV 275
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77877.15462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KAD5_9PHAE9.130e-2337.21DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KMJ3_9PHAE2.040e-2237.21DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JER6_9PHAE8.520e-2237.21DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5KCC7_9PHAE5.920e-1835.59DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JJP9_9PHAE1.720e-1637.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00156913B65.000e-628.33piggyBac transposable element-derived protein 4-li... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77877contigH-elongata_contig77877:1548..2060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score75.1
Seed ortholog evalue2.6e-11
Seed eggNOG ortholog48698.ENSPFOP00000022267
EggNOG free text desc.piggyBac transposable
EggNOG OGs28PUT@1,2QWHD@2759,38EA4@33154,3BMU4@33208,3CZSB@33213,48G9Q@7711,49KX8@7742
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size399
Cds size375
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77877.15462.1prot_H-elongata_contig77877.15462.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77877 1548..2036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931184.0891535-CDS-H-elongata_contig77877:1547..16951622931184.0891535-CDS-H-elongata_contig77877:1547..1695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77877 1548..1695 -
1691679732.497358-CDS-H-elongata_contig77877:1547..16951691679732.497358-CDS-H-elongata_contig77877:1547..1695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77877 1548..1695 -
1622931184.1048634-CDS-H-elongata_contig77877:1809..20361622931184.1048634-CDS-H-elongata_contig77877:1809..2036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77877 1810..2036 -
1691679732.507747-CDS-H-elongata_contig77877:1809..20361691679732.507747-CDS-H-elongata_contig77877:1809..2036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77877 1810..2036 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931184.1195781-UTR-H-elongata_contig77877:2036..20601622931184.1195781-UTR-H-elongata_contig77877:2036..2060Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77877 2037..2060 -
1691679732.5170007-UTR-H-elongata_contig77877:2036..20601691679732.5170007-UTR-H-elongata_contig77877:2036..2060Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77877 2037..2060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77877.15462.1

>prot_H-elongata_contig77877.15462.1 ID=prot_H-elongata_contig77877.15462.1|Name=mRNA_H-elongata_contig77877.15462.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MNHMYAIIGLVILMGLQPFGEIRCHWETHVEDDFPRVRKCLTRNFFLLVY
CRYIHMASKQDKKPGEDGYDILHHIRGLEYILNKAWSTCCCPRRWVAFDE
QMDVNKGRFGKVIRRYLPNKPIKCG
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mRNA from alignment at H-elongata_contig77877:1548..2060-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77877.15462.1 ID=mRNA_H-elongata_contig77877.15462.1|Name=mRNA_H-elongata_contig77877.15462.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=513bp|location=Sequence derived from alignment at H-elongata_contig77877:1548..2060- (Himanthalia elongata Himel1 dioecious)
AAGTGGCCCGACAATGGCATCACGATGAACCATATGTATGCCATCATCGG
TTTAGTGATTCTCATGGGCCTGCAACCATTCGGAGAAATAAGGTGTCATT
GGGAAACCCACGTTGAAGACGATTTTCCTCGCGTACGAAAGTGTCTGACC
CGAAACTTCTTTCTACTTGTGTACTGCCGGTACATACATATGGCTTCAAA
GCAGGATAAGAAACCGGGCGAAGATGGGTACGATATTCTGCATCATATCA
GGTACGGTATGTTTCGTGAACGTCATGTATATTTTTAGGGTAGCTGTGTA
CACGGTAATGTTATTCATCATGCCTATTTTGTACTGCGAAGCTTTACACT
AATCCGATATGTCAGGGGATTGGAATATATTTTGAACAAGGCGTGGAGCA
CGTGCTGTTGCCCTAGGAGATGGGTTGCATTTGACGAGCAGATGGATGTG
AACAAGGGACGGTTCGGCAAAGTTATACGGCGCTACCTGCCAAACAAACC
CATAAAATGTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig77877:1548..2060-

>mRNA_H-elongata_contig77877.15462.1 ID=mRNA_H-elongata_contig77877.15462.1|Name=mRNA_H-elongata_contig77877.15462.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig77877:1548..2060- (Himanthalia elongata Himel1 dioecious)
ATGAACCATATGTATGCCATCATCGGTTTAGTGATTCTCATGGGCCTGCA
ACCATTCGGAGAAATAAGGTGTCATTGGGAAACCCACGTTGAAGACGATT
TTCCTCGCGTACGAAAGTGTCTGACCCGAAACTTCTTTCTACTTGTGTAC
TGCCGGTACATACATATGGCTTCAAAGCAGGATAAGAAACCGGGCGAAGA
TGGGTACGATATTCTGCATCATATCAGATGAACCATATGTATGCCATCAT
CGGTTTAGTGATTCTCATGGGCCTGCAACCATTCGGAGAAATAAGGTGTC
ATTGGGAAACCCACGTTGAAGACGATTTTCCTCGCGTACGAAAGTGTCTG
ACCCGAAACTTCTTTCTACTTGTGTACTGCCGGTACATACATATGGCTTC
AAAGCAGGATAAGAAACCGGGCGAAGATGGGTACGATATTCTGCATCATA
TCAGGGGATTGGAATATATTTTGAACAAGGCGTGGAGCACGTGCTGTTGC
CCTAGGAGATGGGTTGCATTTGACGAGCAGATGGATGTGAACAAGGGACG
GTTCGGCAAAGTTATACGGCGCTACCTGCCAAACAAACCCATAAAATGTG
GTGGGATTGGAATATATTTTGAACAAGGCGTGGAGCACGTGCTGTTGCCC
TAGGAGATGGGTTGCATTTGACGAGCAGATGGATGTGAACAAGGGACGGT
TCGGCAAAGTTATACGGCGCTACCTGCCAAACAAACCCATAAAATGTGGT
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