mRNA_H-elongata_contig77868.15459.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77868.15459.1
Unique NamemRNA_H-elongata_contig77868.15459.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: A0A6H5L1F1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.330e-13
Identity = 47/129 (36.43%), Postives = 77/129 (59.69%), Query Frame = 1
Query:   46 LREHTARTAELTRQRDQTGLYQHIKSLE-LEGKRGCKSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPE------HAPLAAEPSLEEVKEAVGKLGNGKAVGVDNVCGELL 411
            L  + AR   +   RD  GLY+H+KSL  L+G++      +K+ +G++LR K  +L RW  +F  LLNA+SPTL+ SI+++++Q P+         + + P+LEE + A   + N KA G D++  E+L
Sbjct:    8 LERYVARMESILDDRDMRGLYKHLKSLVGLDGRQTGGQQPVKDENGVMLRSKGGVLRRWARFFGTLLNAESPTLNPSIIEEVKQRPKVPTNDGSQHVGSAPTLEETQRAARGMKNWKAPGHDSLPLEIL 136          
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: UPI001F135E6E (uncharacterized protein LOC124542503 n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F135E6E)

HSP 1 Score: 61.6 bits (148), Expect = 2.160e-8
Identity = 39/86 (45.35%), Postives = 48/86 (55.81%), Query Frame = 1
Query:  154 STYIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNVCGELL 411
            S  IK+ +G LL  K  +L RW E F  LLN      D   L  + +LP+   L   PSL+EV EA+    N KAVGVDN+ GELL
Sbjct:  452 SVPIKSTNGTLLVSKEDVLNRWSEHFNNLLNVDR-LADFEYLRTLPELPKREDLVQPPSLQEVIEAIKAQKNKKAVGVDNIPGELL 536          
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: UPI001F5F87EB (uncharacterized protein LOC124805420 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5F87EB)

HSP 1 Score: 57.0 bits (136), Expect = 5.570e-7
Identity = 46/127 (36.22%), Postives = 63/127 (49.61%), Query Frame = 1
Query:   16 RAKRAELQNFLREHTARTAELTRQRDQTGLYQHIKSLELEGKRGCKSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNV 396
            R K+ +  N+      + AE  R  D  G ++ I   +  G       +I +  G LL ++  I  RWKE+F ELLNA  PT+  S  DD E L    P   EPSL E+KE++ KL   KA G D +
Sbjct:  104 RKKKRDFMNY----KLKRAENDRTTDSRGFFKSINMFK-SGNIKNYGQFITDPDGSLLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGI 222          
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: UPI001F5F24CA (uncharacterized protein LOC124777988 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5F24CA)

HSP 1 Score: 57.0 bits (136), Expect = 6.500e-7
Identity = 46/127 (36.22%), Postives = 63/127 (49.61%), Query Frame = 1
Query:   16 RAKRAELQNFLREHTARTAELTRQRDQTGLYQHIKSLELEGKRGCKSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNV 396
            R K+ +  N+      + AE  R  D  G ++ I   +  G       +I +  G LL ++  I  RWKE+F ELLNA  PT+  S  DD E L    P   EPSL E+KE++ KL   KA G D +
Sbjct:  104 RKKKRDFMNY----KLKRAENDRTTDSRGFFKSINMFK-SGNIKNYGQFITDPDGSLLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGI 222          
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: A0A3B3HUN9_ORYLA (Reverse transcriptase domain-containing protein n=1 Tax=Oryzias latipes TaxID=8090 RepID=A0A3B3HUN9_ORYLA)

HSP 1 Score: 57.4 bits (137), Expect = 6.680e-7
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  151 KSTY-IKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNVCGELL 411
            K+T+ +++ SG LL   PSI  RW E F ELLN  + T+DAS++DDIEQLP    L    + EE+  A+     GK+ G D V  E+L
Sbjct:  196 KTTHPVRSKSGALLTSTPSIKGRWVEHFSELLNQPT-TVDASLIDDIEQLPTDVSLDLPITEEELDIALKNTKLGKSPGPDGVLPEVL 282          
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: UPI001F5FE6C3 (uncharacterized protein LOC124795698 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5FE6C3)

HSP 1 Score: 57.0 bits (136), Expect = 7.610e-7
Identity = 46/127 (36.22%), Postives = 63/127 (49.61%), Query Frame = 1
Query:   16 RAKRAELQNFLREHTARTAELTRQRDQTGLYQHIKSLELEGKRGCKSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNV 396
            R K+ +  N+      + AE  R  D  G ++ I   +  G       +I +  G LL ++  I  RWKE+F ELLNA  PT+  S  DD E L    P   EPSL E+KE++ KL   KA G D +
Sbjct:  153 RKKKRDFMNY----KLKRAENDRTTDSRGFFKSINMFK-SGNIKNYGQFITDPDGSLLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGI 271          
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: A0A8M1KV33_CLUHA (zinc finger protein 883-like n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KV33_CLUHA)

HSP 1 Score: 57.0 bits (136), Expect = 8.430e-7
Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 1
Query:   91 DQTGLYQHIKSLELEGKRGCKSTYIKNASGM-LLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNVCGELL 411
            D    Y  +KS++  G      T +K A G+ +L+D+ S+L RW E F  LLN  S   D +ILD + +LP    L   P+  EV  AV  L N K+ G+DN+  ELL
Sbjct:   21 DMHNFYNAVKSID--GPTNHCITPLKTADGLRVLKDQSSVLERWAEHFNTLLNRDSEA-DHTILDQLPELPPIDILNQPPTFLEVLSAVRSLKNNKSPGMDNIPAELL 125          
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: UPI001F5F0EE2 (uncharacterized protein LOC124719631 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5F0EE2)

HSP 1 Score: 57.0 bits (136), Expect = 9.270e-7
Identity = 46/127 (36.22%), Postives = 63/127 (49.61%), Query Frame = 1
Query:   16 RAKRAELQNFLREHTARTAELTRQRDQTGLYQHIKSLELEGKRGCKSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNV 396
            R K+ +  N+      + AE  R  D  G ++ I   +  G       +I +  G LL ++  I  RWKE+F ELLNA  PT+  S  DD E L    P   EPSL E+KE++ KL   KA G D +
Sbjct:  788 RKKKRDFMNY----KLKRAENDRTTDSRGFFKSINMFK-SGNIKNYGQFITDPDGSLLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGI 906          
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: UPI001F5E8EE8 (uncharacterized protein LOC124719790 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5E8EE8)

HSP 1 Score: 56.2 bits (134), Expect = 1.120e-6
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  160 YIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNV 396
            +I +  G LL ++  I  RWKE+F ELLNA  PT+  S  DD E L    P   EPSL E+KE++ KL   KA G D +
Sbjct:  147 FITDPDGSLLTERSDIANRWKEYFNELLNA--PTISVSQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGI 222          
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Match: UPI001F5E4078 (uncharacterized protein LOC124718771 n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5E4078)

HSP 1 Score: 56.6 bits (135), Expect = 1.190e-6
Identity = 46/127 (36.22%), Postives = 63/127 (49.61%), Query Frame = 1
Query:   16 RAKRAELQNFLREHTARTAELTRQRDQTGLYQHIKSLELEGKRGCKSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLPEHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNV 396
            R K+ +  N+      + AE  R  D  G ++ I   +  G       +I +  G LL ++  I  RWKE+F ELLNA  PT+  S  DD E L    P   EPSL E+KE++ KL   KA G D +
Sbjct:  429 RKKKRDFMNY----KLKRAENDRTTDSRGFFKSINMFK-SGNIKNYGQFITDPDGSLLTERSDIANRWKEYFNELLNA--PTISISQEDDNEYLTAD-PSDEEPSLAEIKESIKKLKRHKAPGSDGI 547          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77868.15459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1F1_9PHAE4.330e-1336.43Reverse transcriptase domain-containing protein n=... [more]
UPI001F135E6E2.160e-845.35uncharacterized protein LOC124542503 n=1 Tax=Vanes... [more]
UPI001F5F87EB5.570e-736.22uncharacterized protein LOC124805420 n=1 Tax=Schis... [more]
UPI001F5F24CA6.500e-736.22uncharacterized protein LOC124777988 n=1 Tax=Schis... [more]
A0A3B3HUN9_ORYLA6.680e-744.32Reverse transcriptase domain-containing protein n=... [more]
UPI001F5FE6C37.610e-736.22uncharacterized protein LOC124795698 n=1 Tax=Schis... [more]
A0A8M1KV33_CLUHA8.430e-738.89zinc finger protein 883-like n=1 Tax=Clupea hareng... [more]
UPI001F5F0EE29.270e-736.22uncharacterized protein LOC124719631 n=1 Tax=Schis... [more]
UPI001F5E8EE81.120e-645.57uncharacterized protein LOC124719790 n=1 Tax=Schis... [more]
UPI001F5E40781.190e-636.22uncharacterized protein LOC124718771 n=1 Tax=Schis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77868contigH-elongata_contig77868:3..413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.5
Seed ortholog evalue7.3e-07
Seed eggNOG ortholog13735.ENSPSIP00000000041
KEGG koko:K04257
KEGG Pathwayko04740,map04740
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39TZY@33154,3BI15@33208,3CYKV@33213,487I3@7711,4962T@7742,4CKCN@8459,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04030
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931183.8579605-CDS-H-elongata_contig77868:2..4131622931183.8579605-CDS-H-elongata_contig77868:2..413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77868 3..413 -
1691679732.4233565-CDS-H-elongata_contig77868:2..4131691679732.4233565-CDS-H-elongata_contig77868:2..413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77868 3..413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77868.15459.1prot_H-elongata_contig77868.15459.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77868 3..413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77868.15459.1

>prot_H-elongata_contig77868.15459.1 ID=prot_H-elongata_contig77868.15459.1|Name=mRNA_H-elongata_contig77868.15459.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
NKAFKRAKRAELQNFLREHTARTAELTRQRDQTGLYQHIKSLELEGKRGC
KSTYIKNASGMLLRDKPSILLRWKEWFQELLNAKSPTLDASILDDIEQLP
EHAPLAAEPSLEEVKEAVGKLGNGKAVGVDNVCGELL
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mRNA from alignment at H-elongata_contig77868:3..413-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77868.15459.1 ID=mRNA_H-elongata_contig77868.15459.1|Name=mRNA_H-elongata_contig77868.15459.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=411bp|location=Sequence derived from alignment at H-elongata_contig77868:3..413- (Himanthalia elongata Himel1 dioecious)
AACAAGGCGTTCAAACGGGCTAAGCGCGCAGAGCTACAGAACTTCCTGCG TGAGCACACCGCCAGGACCGCGGAACTCACCCGTCAGAGGGACCAGACAG GACTGTACCAGCACATTAAGTCACTGGAGCTGGAAGGGAAGAGAGGATGT AAATCAACCTACATAAAGAACGCTTCTGGCATGTTGTTGCGGGACAAGCC GTCTATCCTACTTCGGTGGAAAGAGTGGTTCCAGGAGCTCCTGAACGCGA AATCGCCAACTCTCGACGCCTCTATCCTCGACGACATCGAACAGTTGCCT GAACACGCCCCGCTTGCGGCCGAGCCCTCGTTGGAGGAAGTGAAGGAGGC AGTGGGCAAGCTGGGGAACGGCAAGGCTGTTGGCGTCGACAATGTCTGCG GTGAACTGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig77868:3..413-

>mRNA_H-elongata_contig77868.15459.1 ID=mRNA_H-elongata_contig77868.15459.1|Name=mRNA_H-elongata_contig77868.15459.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig77868:3..413- (Himanthalia elongata Himel1 dioecious)
AACAAGGCGTTCAAACGGGCTAAGCGCGCAGAGCTACAGAACTTCCTGCG
TGAGCACACCGCCAGGACCGCGGAACTCACCCGTCAGAGGGACCAGACAG
GACTGTACCAGCACATTAAGTCACTGGAGCTGGAAGGGAAGAGAGGATGT
AAATCAACCTACATAAAGAACGCTTCTGGCATGTTGTTGCGGGACAAGCC
GTCTATCCTACTTCGGTGGAAAGAGTGGTTCCAGGAGCTCCTGAACGCGA
AATCGCCAACTCTCGACGCCTCTATCCTCGACGACATCGAACAGTTGCCT
GAACACGCCCCGCTTGCGGCCGAGCCCTCGTTGGAGGAAGTGAAGGAGGC
AGTGGGCAAGCTGGGGAACGGCAAGGCTGTTGGCGTCGACAATGTCTGCG
GTGAACTGCTGAACAAGGCGTTCAAACGGGCTAAGCGCGCAGAGCTACAG
AACTTCCTGCGTGAGCACACCGCCAGGACCGCGGAACTCACCCGTCAGAG
GGACCAGACAGGACTGTACCAGCACATTAAGTCACTGGAGCTGGAAGGGA
AGAGAGGATGTAAATCAACCTACATAAAGAACGCTTCTGGCATGTTGTTG
CGGGACAAGCCGTCTATCCTACTTCGGTGGAAAGAGTGGTTCCAGGAGCT
CCTGAACGCGAAATCGCCAACTCTCGACGCCTCTATCCTCGACGACATCG
AACAGTTGCCTGAACACGCCCCGCTTGCGGCCGAGCCCTCGTTGGAGGAA
GTGAAGGAGGCAGTGGGCAAGCTGGGGAACGGCAAGGCTGTTGGCGTCGA
CAATGTCTGCGGTGAACTGCTG
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