mRNA_H-elongata_contig77853.15458.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77853.15458.1
Unique NamemRNA_H-elongata_contig77853.15458.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig77853.15458.1 vs. uniprot
Match: A0A6H5K3I4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I4_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.070e-16
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = -3 
Query:   13 EEASFCRHLKTMNLESKRARSSAYIKDEDGILLRDVALIRERCARWFHTLLNTKLPELEPNITEGIDQWPKNTPL 237
            ++A F RHLK +++E KR  +S  IKDEDG +LRD  L R+R ARWFH LLNTK P ++ + T+ + QWP   PL
Sbjct:  119 DQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPL 193
[Close]
BLAST of mRNA_H-elongata_contig77853.15458.1 vs. uniprot
Match: A0A6H5JEB1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB1_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.440e-16
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = -3 
Query:   13 EEASFCRHLKTMNLESKRARSSAYIKDEDGILLRDVALIRERCARWFHTLLNTKLPELEPNITEGIDQWPKNTPL 237
            ++A F RHLK +++E KR+ +S  IKDEDG +LRD   IR+R ARWFH LLNTK P ++ +  + + +WP   PL
Sbjct:   36 DQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPNIDLHAADKVKRWPTCVPL 110
[Close]
BLAST of mRNA_H-elongata_contig77853.15458.1 vs. uniprot
Match: A0A6H5K2N1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.140e-15
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = -3 
Query:    1 DLRPQPRNTRSKFEEASFCRHLKTMNLESKRARSSAYIKDEDGILLRDVALIRERCARWFHTLLNTKLPELEPNITEGIDQWPKNTPLGVQP 276
            DLR   + +R   ++ASF RHLK +++E KR+ +S  IK+E+G +LRD   IR+R ARWFH LLNTK P ++ +  + + +WP   PL V P
Sbjct:  377 DLRSLEKKSRDG-DQASFDRHLKVIDVEGKRSYTSQNIKEENGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCEPLDVMP 467
[Close]
BLAST of mRNA_H-elongata_contig77853.15458.1 vs. uniprot
Match: A0A6H5KXZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ7_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.340e-15
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = -3 
Query:   13 DLRPQPRNTRSKFEEASFCRHLKTMNLESKRARSSAYIKDEDGILLRDVALIRERCARWFHTLLNTKLPELEPNITEGIDQWPKNTPL 276
            D+R   + +R + ++A F RHL  +++E KR+ +S  IKDEDG +LRD   IR+R ARWFH LLNTK P ++ +  + + +WP   PL
Sbjct:   23 DVRQLEKKSR-EGDQAGFYRHLNMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPL 109
[Close]
BLAST of mRNA_H-elongata_contig77853.15458.1 vs. uniprot
Match: A0A6H5K397_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K397_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.260e-15
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = -3 
Query:   13 EEASFCRHLKTMNLESKRARSSAYIKDEDGILLRDVALIRERCARWFHTLLNTKLPELEPNITEGIDQWPKNTPL 237
            ++A F RHLK +++E KR+ +S  IKDEDG +LRD   IR+R ARWFH LLNTK P ++ +  + + +WP   PL
Sbjct:   94 DQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPL 168
[Close]
BLAST of mRNA_H-elongata_contig77853.15458.1 vs. uniprot
Match: A0A6H5JGD8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGD8_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.780e-15
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = -3 
Query:   13 QPRNTRSKFEEASFCRHLKTMNLESKRARSSAYIKDEDGILLRDVALIRERCARWFHTLLNTKLPELEPNITEGIDQWPKNTPL 264
            QP     + ++A F RHLK +++E KR+ +S  IKDEDG +LRD   IR+R ARWFH LLNTK P ++ +  + + +WP   PL
Sbjct:   85 QPEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPL 168
[Close]
BLAST of mRNA_H-elongata_contig77853.15458.1 vs. uniprot
Match: A0A6H5JFE9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.970e-15
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = -3 
Query:   13 EEASFCRHLKTMNLESKRARSSAYIKDEDGILLRDVALIRERCARWFHTLLNTKLPELEPNITEGIDQWPKNTPL 237
            ++A F RHLK +++E KR+ +S  IKDEDG +LRD  LIR+R ARWFH LLNTK P ++ +  + + +WP   PL
Sbjct:   36 DQAGFDRHLKVIDVEGKRSFTSRSIKDEDGKVLRDPTLIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPL 110
[Close]
BLAST of mRNA_H-elongata_contig77853.15458.1 vs. uniprot
Match: A0A6H5L012_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L012_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.740e-15
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = -3 
Query:   13 EEASFCRHLKTMNLESKRARSSAYIKDEDGILLRDVALIRERCARWFHTLLNTKLPELEPNITEGIDQWPKNTPL 237
            ++A F RHLK +++E KR+ +S  IKDEDG +LRD   IR+R ARWFH LLNTK P ++ +  + + +WP   PL
Sbjct:   58 DQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPL 132
[Close]
BLAST of mRNA_H-elongata_contig77853.15458.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.910e-15
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = -3 
Query:   13 EEASFCRHLKTMNLESKRARSSAYIKDEDGILLRDVALIRERCARWFHTLLNTKLPELEPNITEGIDQWPKNTPL 237
            ++A F RHLK +++E KR  +S  IKDEDG +LRD  L R+R ARWFH LLNTK P ++ + T+ + QWP   PL
Sbjct:  269 DQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPL 343
[Close]
BLAST of mRNA_H-elongata_contig77853.15458.1 vs. uniprot
Match: A0A6H5JUB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB0_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.960e-15
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = -3 
Query:   13 EEASFCRHLKTMNLESKRARSSAYIKDEDGILLRDVALIRERCARWFHTLLNTKLPELEPNITEGIDQWPKNTPL 237
            ++A F RHLK +++E KR  +S  IKDEDG +LRD  L R+R ARWFH LLNTK P ++ + T+ + QWP   PL
Sbjct:   54 DQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPL 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77853.15458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3I4_9PHAE3.070e-1652.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JEB1_9PHAE4.440e-1649.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K2N1_9PHAE1.140e-1545.65Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KXZ7_9PHAE1.340e-1544.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K397_9PHAE2.260e-1549.33Uncharacterized protein (Fragment) n=3 Tax=Ectocar... [more]
A0A6H5JGD8_9PHAE2.780e-1546.43Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JFE9_9PHAE2.970e-1550.67Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L012_9PHAE3.740e-1549.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8Z5_9PHAE3.910e-1552.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JUB0_9PHAE3.960e-1552.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77853contigH-elongata_contig77853:1946..2547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size581
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77853.15458.1prot_H-elongata_contig77853.15458.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77853 1998..2369 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931183.7404077-UTR-H-elongata_contig77853:1945..19971622931183.7404077-UTR-H-elongata_contig77853:1945..1997Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77853 1946..1997 +
1691679732.3805566-UTR-H-elongata_contig77853:1945..19971691679732.3805566-UTR-H-elongata_contig77853:1945..1997Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77853 1946..1997 +
1622931183.8109794-UTR-H-elongata_contig77853:2369..25471622931183.8109794-UTR-H-elongata_contig77853:2369..2547Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77853 2370..2547 +
1691679732.4133265-UTR-H-elongata_contig77853:2369..25471691679732.4133265-UTR-H-elongata_contig77853:2369..2547Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77853 2370..2547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931183.7647579-CDS-H-elongata_contig77853:1997..22891622931183.7647579-CDS-H-elongata_contig77853:1997..2289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77853 1998..2289 +
1691679732.3900166-CDS-H-elongata_contig77853:1997..22891691679732.3900166-CDS-H-elongata_contig77853:1997..2289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77853 1998..2289 +
1622931183.7870357-CDS-H-elongata_contig77853:2310..23691622931183.7870357-CDS-H-elongata_contig77853:2310..2369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77853 2311..2369 +
1691679732.403989-CDS-H-elongata_contig77853:2310..23691691679732.403989-CDS-H-elongata_contig77853:2310..2369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77853 2311..2369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77853.15458.1

>prot_H-elongata_contig77853.15458.1 ID=prot_H-elongata_contig77853.15458.1|Name=mRNA_H-elongata_contig77853.15458.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MFGSSSGNLVFKRVWNHRAHRSRISATSLRSMPSSSLMYAELRARFDSKF
IVFRCLQKLASSNFERVFRGCGRRSRRSSTWQSHEPSEDAYQSSLRPFLH
VGVSSPPFSVAMLRSS*
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mRNA from alignment at H-elongata_contig77853:1946..2547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77853.15458.1 ID=mRNA_H-elongata_contig77853.15458.1|Name=mRNA_H-elongata_contig77853.15458.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=602bp|location=Sequence derived from alignment at H-elongata_contig77853:1946..2547+ (Himanthalia elongata Himel1 dioecious)
GGGCTGAACTCCTAGCGGCGTGTTTTTCGGCCACTGGTCAATACCTTCAG
TGATGTTCGGCTCAAGCTCCGGTAACTTGGTGTTCAAGAGAGTGTGGAAC
CACCGGGCACATCGTTCCCGGATAAGTGCAACGTCTCTCAGAAGTATGCC
GTCCTCGTCTTTGATGTACGCCGAGCTGCGGGCTCGCTTCGATTCCAAGT
TCATCGTCTTCAGGTGCCTGCAGAAGCTTGCCTCCTCGAATTTCGAACGT
GTGTTTCGAGGTTGCGGACGAAGATCCAGAAGAAGCTCAACATGGCAGTC
TCACGAACCTTCCGAAGATGCTTACCAGTCATCTTTACGGCCTTTCGAAA
GCTGAAATTGTGGGGTTCTGCACGTAGGCGTCTCCTCGCCTCCTTTCTCT
GTTGCCATGCTGCGTTCATCTTAGTTTCCACACCAGGACCCACGCATCAA
CCCTGTGCTCCACGCGGGCGCTTAGAACGCGGTGTCAGTTCAGCCGCAGT
TGAAAGCATGATGTCAGCCATATCGTCGGTGATATCACCGATGAAGGTGT
CATCGGGAATGGGTGGTAGTGTTAGCATTTAAGATTAGGCTACACAGTCT
AC
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Coding sequence (CDS) from alignment at H-elongata_contig77853:1946..2547+

>mRNA_H-elongata_contig77853.15458.1 ID=mRNA_H-elongata_contig77853.15458.1|Name=mRNA_H-elongata_contig77853.15458.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig77853:1946..2547+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGGCTCAAGCTCCGGTAACTTGGTGTTCAAGAGAGTGTGGAACCA
CCGGGCACATCGTTCCCGGATAAGTGCAACGTCTCTCAGAAGTATGCCGT
CCTCGTCTTTGATGTACGCCGAGCTGCGGGCTCGCTTCGATTCCAAGTTC
ATCGTCTTCAGGTGCCTGCAGAAGCTTGCCTCCTCGAATTTCGAACGTGT
GTTTCGAGGTTGCGGACGAAGATCCAGAAGAAGCTCAACATGGCAGTCTC
ACGAACCTTCCGAAGATGCTTACCAGTCATCTTTACGGCCTTATGTTCGG
CTCAAGCTCCGGTAACTTGGTGTTCAAGAGAGTGTGGAACCACCGGGCAC
ATCGTTCCCGGATAAGTGCAACGTCTCTCAGAAGTATGCCGTCCTCGTCT
TTGATGTACGCCGAGCTGCGGGCTCGCTTCGATTCCAAGTTCATCGTCTT
CAGGTGCCTGCAGAAGCTTGCCTCCTCGAATTTCGAACGTGTGTTTCGAG
GTTGCGGACGAAGATCCAGAAGAAGCTCAACATGGCAGTCTCACGAACCT
TCCGAAGATGCTTACCAGTCATCTTTACGGCCTTTTCTGCACGTAGGCGT
CTCCTCGCCTCCTTTCTCTGTTGCCATGCTGCGTTCATCTTAGTTCTGCA
CGTAGGCGTCTCCTCGCCTCCTTTCTCTGTTGCCATGCTGCGTTCATCTT
AG
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