mRNA_H-elongata_contig77797.15456.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77797.15456.1
Unique NamemRNA_H-elongata_contig77797.15456.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: A0A2P4Y3Q2_9STRA (Pre-mRNA-processing factor (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3Q2_9STRA)

HSP 1 Score: 263 bits (673), Expect = 2.180e-83
Identity = 165/300 (55.00%), Postives = 205/300 (68.33%), Query Frame = 1
Query:    1 GAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEGGAGPPGAAKDPDFGPAPKGYIAGRGRGMGDLAKANHEGAGRGAGRGSTGAVGGT--------DLSESNFDEFSGYRER-LFGDTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQS----KRKEVFTPMPDHVIEGARNESAVTLGSVTPGTS--------TANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
            GAP+NYV GLGRGAVGFTTRSDIGPARAP+ + G       +D  F P      AGRGRG+ ++       AGRG+G    G  G          D SE+N+DEFSGY  R LF DTPYD DD+EAD IYE +DE +D RRKRRRE+ Q+E +KK R+E PKISDQFADLK  L ++S  EWE IPD+GDYSLKYK +    KR E+F P+PD V+ GA   S ++ G++TP  +        T++++ L+ ARG  L  KLDKMSDS++GQT V+PKGYLTDLNSLK+ SDAE+GDI+K
Sbjct:   15 GAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDGT------QDAPFLPP-----AGRGRGV-EIPGRPGPSAGRGSGTAGMGGFGREKDENEDFGDYSETNYDEFSGYSSRGLFQDTPYDQDDKEADDIYEQVDERMDARRKRRRELKQLEELKKARKEMPKISDQFADLKSSLQNMSDAEWEMIPDIGDYSLKYKINTALQKRNEMFAPVPDSVL-GANAGSTIS-GTITPAGNGIETPSGMTSSVTGLAGARGAQLSHKLDKMSDSISGQTVVDPKGYLTDLNSLKLTSDAEIGDIKK 300          
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: A0A4D9D6Q2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6Q2_9STRA)

HSP 1 Score: 277 bits (709), Expect = 4.550e-83
Identity = 163/290 (56.21%), Postives = 199/290 (68.62%), Query Frame = 1
Query:    1 GAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEGGAGPPGAAKDPDFGPAPKGYIAGRGRGMGDLAKANHEGA-GRGAGRGSTGAVGGTDLSESNFDEFSGYRERLFG-DTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQSKRKEVFTPMPDHVIEGARNESAVTLGSVTPGTS---------TANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
            GAP  Y AG GRGA+GFTTRSDIGPAR+ +PE            +FG  P GY+AGRGRGMGDLA++  EG   R  G    G     D SESN+D+FSGY   LFG D+PY+ DD EAD+IY+AID+ +D+RRKRRRE   +E++KK R ERPK  DQF DLK  L +VS  EW  IPDVGD SLK+KQ KR+EVFTP PDH+IE  R         + P T          +++++ LS AR TVL +KLDKMSDSV+GQT V+PKGYLTDLNS+KIN+D EVGDI++
Sbjct:   15 GAPQGYQAGFGRGAIGFTTRSDIGPARSSVPE-----------VNFGQPPPGYVAGRGRGMGDLARSQAEGGLPREEGDRDKG-----DYSESNYDDFSGYGGALFGGDSPYEDDDREADKIYQAIDDRMDSRRKRRREEQLLESLKKARAERPKAGDQFTDLKADLKNVSMEEWMGIPDVGDQSLKFKQRKRQEVFTPAPDHLIESQRAALVDAAAPIDPRTGLQTPMSAGGSSSIAGLSQARETVLSIKLDKMSDSVSGQTVVDPKGYLTDLNSIKINTDTEVGDIKR 288          
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: D7FHD2_ECTSI (PRP1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD2_ECTSI)

HSP 1 Score: 268 bits (685), Expect = 1.760e-80
Identity = 142/163 (87.12%), Postives = 148/163 (90.80%), Query Frame = 1
Query:  367 AIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQSKRKEVFTPMPDHVIEGARNESAVT------LGSVTPGTSTANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
            AIDEHVDTRRKRRRE AQ+EAMKKEREERPKISDQFADLKGHLA VSQ EWEAIPDVGDYSLKYKQSKR+E+FTPMPDHVIEGARN+ AV       LG  TPGTST N+SSL HARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKI+SDAEVGDIEK
Sbjct:    3 AIDEHVDTRRKRRREEAQVEAMKKEREERPKISDQFADLKGHLAGVSQSEWEAIPDVGDYSLKYKQSKRREIFTPMPDHVIEGARNDGAVVGTMDPALGGATPGTSTTNISSLGHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKISSDAEVGDIEK 165          
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: A0A5D6YDN0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDN0_9STRA)

HSP 1 Score: 268 bits (686), Expect = 1.050e-79
Identity = 170/309 (55.02%), Postives = 206/309 (66.67%), Query Frame = 1
Query:    1 GAPSNYVAGLGRGAVGFTTRSDIGPARAPL-PEGGAGPPGAAK------DPDFGPAPKGYIAGRGRGMG-DLAKA-----------NHEGAGRGA-GRGSTGAVGGTDLSESNFDEFSGYRER-LFGDTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQS----KRKEVFTPMPDHVIEG-----ARNESAVTLGSVTPGTSTANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
            GAP+NYV GLGRGAVGFTTRSDIGPAR+PL PEG A   GA +       P   PAP  ++ G GRG G D A                 AG G  GR +       D SE+N+DEFSGY    LF DTPYD DD EAD IY+++DE +DTRRKRRREV  +E +KK R+ERPKISDQFADLK  L  +S  EW+ IPD+GDYSLK+K +    KR E+F P+PDH++ G     A N +    G++TP   T+ ++ L+ ARG VL  KLDKMSDS+TGQT V+PKGYLTDLNSLK+ SDAE+GDI+K
Sbjct:   15 GAPANYVPGLGRGAVGFTTRSDIGPARSPLTPEGLAADGGALRAAPTTAGPPGPPAP--FLPGAGRGRGSDFAGGAXXXXXXXXXXXXXXAGLGGFGRATDENEDFGDYSETNYDEFSGYSSGGLFQDTPYDQDDREADDIYDSVDERMDTRRKRRREVRMLEELKKARQERPKISDQFADLKAGLRGMSDAEWDQIPDIGDYSLKFKTNTALQKRNELFAPLPDHLLAGNAGAVAANGAGALNGTITPSGMTSTITGLAEARGAVLSHKLDKMSDSITGQTVVDPKGYLTDLNSLKLTSDAEIGDIKK 321          
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: K3WCC0_GLOUD (PRP1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCC0_GLOUD)

HSP 1 Score: 265 bits (677), Expect = 2.070e-78
Identity = 169/310 (54.52%), Postives = 203/310 (65.48%), Query Frame = 1
Query:    1 GAPSNYVAGLGRGAVGFTTRSDIGPARAPL-PEGGAGPPGAAKDPDFGPAPKGYIAGRGRGMG-DLAKANHE-----------GAGRGAGRGSTGAVGGTDLSESNFDEFSGYRE-RLFGDTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQS----KRKEVFTPMPDHVIEG-----ARNESAVTLGSVTPGTS--------TANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
            GAP+NYV GLGRGAVGFTTRSDIGPARAP+ P+G   P G A      P    Y+ G GRG G DL                 G G G GR         D SE+N+D+FSGY    LF DTPYD DD EAD IYE+IDE +D+RRKRRREV  +E +KK R+ERPKISDQFADLK  L ++S  EWE IPD+GDYSLKYK +    KR E+F P+PDH++ G     A N ++   G++TP           T+ ++ L+ ARG VL  KLDKMSDS+TGQT V+PKGYLTDLNSLK+ SDAE+GDI+K
Sbjct:   15 GAPANYVPGLGRGAVGFTTRSDIGPARAPMAPDGSGAPVGGAPGXXAPP----YLPGAGRGRGVDLPXXXXXXXXXXXXXXXXGMG-GFGRDVDENEDYGDYSETNYDQFSGYSSVGLFQDTPYDQDDREADDIYESIDERMDSRRKRRREVKMLEELKKARQERPKISDQFADLKAGLQNMSDAEWEMIPDIGDYSLKYKTNTALQKRNEMFAPVPDHLLAGNASGVAANGASALNGTITPAGGMETPGNGMTSTITGLAEARGAVLSHKLDKMSDSITGQTVVDPKGYLTDLNSLKLTSDAEIGDIKK 319          
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: A0A1V9ZC51_9STRA (Pre-mRNA-processing factor n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC51_9STRA)

HSP 1 Score: 265 bits (677), Expect = 7.250e-78
Identity = 161/296 (54.39%), Postives = 198/296 (66.89%), Query Frame = 1
Query:    4 APSNYVAGLGRGAVGFTTRSDIGPARAPLPEGGAGPPGAAKDPDFGPAPKGYIAGRGRG--MGDLAKANHEGAGRGAGRGSTGAVGGT--------DLSESNFDEFSGYRER-LFGDTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQSKRKEVFTPMPDHVIEGARNESAVTLGSVTP-------GTSTANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
            AP+NYVAG+GRGA+GFTTRSDIGPAR+  P    G                   GRGRG  MG +      G GRG+G    G  G          D SE+N+DEFSGY    LF D PYD DD EAD IY  IDE +D++RKRRRE+ Q+E MKK R ERPKISDQFADLK  L++VS  EWEAIPD+GD+SL+YKQ +R E++TP+PD++++     S   +G+ TP       G  T++++ L+ ARG VL LKLDKMSDS++GQT V+PKGYLTDLNSLKI SDAEVGDI+K
Sbjct:  175 APANYVAGVGRGAIGFTTRSDIGPARSDDPVDLIG------------------MGRGRGLTMGGI-PIGMPGGGRGSGTAGVGGFGRETDESGDRGDYSETNYDEFSGYTGAGLFNDMPYDQDDAEADDIYAKIDERMDSKRKRRRELKQLEDMKKARRERPKISDQFADLKTSLSEVSDAEWEAIPDIGDHSLRYKQQRRAEIYTPVPDNLLDPRTQTSTTVVGTDTPSGLASTIGGMTSSLTGLAEARGAVLSLKLDKMSDSISGQTVVDPKGYLTDLNSLKITSDAEVGDIKK 451          
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: A0A067CRR5_SAPPC (PRP1_N domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CRR5_SAPPC)

HSP 1 Score: 262 bits (670), Expect = 1.540e-77
Identity = 161/294 (54.76%), Postives = 196/294 (66.67%), Query Frame = 1
Query:    4 APSNYVAGLGRGAVGFTTRSDIGPARAPLPEGGAGPPGAAKDPDFGPAPKGYIAGRGRGMGDLAKANHEGAGRGAGRGSTGAVGGT--------DLSESNFDEFSGYRER-LFGDTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQSKRKEVFTPMPDHVIEGARNESAVTLGSVTP-------GTSTANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
            AP+NYVAGLGRGA+GFTTRSDIGPAR   P    G  G  +    G AP     G    MG +      G GRG+G    G  G          D SE+N+DEFSGY    LF DTPYD DD EAD IY  IDE +D++RKRRRE+ Q+E +KK R ERPKISDQFADLK  L+ VS  EWEAIPD+GD+SL+YKQ +R E++TP+PD +++     +   +G+ TP       G  T++ + L+ ARG VL LKLDKMSDS++GQT V+PKGYLTDLNSLKI SDAEVGDI+K
Sbjct:   12 APANYVAGLGRGAIGFTTRSDIGPARPDDPVDMLGAMGRGR----GTAPXXXXGGLM--MGGI-PIGMPGGGRGSGTAGVGGFGRETDESGDRGDYSETNYDEFSGYTGAGLFNDTPYDQDDAEADDIYAKIDERMDSKRKRRREMKQLEDIKKARRERPKISDQFADLKTTLSTVSDAEWEAIPDIGDHSLRYKQQRRAEIYTPVPDSLLDARAQTTNTVVGTDTPSGLASTVGGMTSSFTGLAEARGAVLSLKLDKMSDSISGQTVVDPKGYLTDLNSLKITSDAEVGDIKK 298          
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: A0A1V9ZAY2_9STRA (Pre-mRNA-processing factor n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZAY2_9STRA)

HSP 1 Score: 261 bits (668), Expect = 2.940e-77
Identity = 161/295 (54.58%), Postives = 197/295 (66.78%), Query Frame = 1
Query:    4 APSNYVAGLGRGAVGFTTRSDIGPARAPLPEGGAGPPGAAKDPDFGPAPKGYIAGRGRGMGDLAKANHEGAGRGAGRGSTGAVGGT--------DLSESNFDEFSGYRER-LFGDTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQSKRKEVFTPMPDHVIEG-ARNESAVTLGSVTP-------GTSTANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
            AP+NYVAGLGRGA+GFTTRSDIGPAR   P    G  G  +     P P G        MG +      G GRG+G    G  G          D SE+N+DEFSGY    LF D PYD DD EAD IY  +DE +D++RKRRRE+ Q+E MKK R ERPKISDQFADLK  LA VS  EWEAIPD+GD+SL+YKQ++R E++TP+PD++++   +  + V  G  TP       G  T++++ L+ ARG VL LKLDKMSDS++GQT V+PKGYLTDLNSLKI SDAEVGDI+K
Sbjct:   12 APANYVAGLGRGAIGFTTRSDIGPARPDDPVDMLGAMGRGRG--MAPPPGGLT------MGGI-PIGLPGGGRGSGTAGVGGFGRETDDSGDRGDYSETNYDEFSGYTGTGLFNDMPYDQDDAEADDIYAKVDERMDSKRKRRRELKQLEDMKKARRERPKISDQFADLKTTLATVSDAEWEAIPDIGDHSLRYKQARRAEIYTPVPDNLLDPRTQTSTTVVSGLDTPSGMASTVGGMTSSLTGLAEARGAVLSLKLDKMSDSISGQTVVDPKGYLTDLNSLKITSDAEVGDIKK 297          
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: A0A6A5AMU0_9STRA (PRP1_N domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AMU0_9STRA)

HSP 1 Score: 240 bits (613), Expect = 8.970e-75
Identity = 156/294 (53.06%), Postives = 188/294 (63.95%), Query Frame = 1
Query:    4 APSNYVAGLGRGAVGFTTRSDIGPARA--PLPEGGAGPPGAAKDPDFG----PAPKGYIAGRGRGMGDLAKANHEGAGRGAGRGSTGAVGGTDLSESNFDEFSGYRERLFGDTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQSKRK-EVFTPMPDHVIEGARNESA--VTLGSVTP---GTSTANMSS----LSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
            AP+NYVAGLGRGA+GFTTRSDIGPAR+  P      G PG  +         PAP   I   G       + +      G GR    A G                  LF DTPYD DD EAD IY  +DEH+D RRKRRRE+ Q+E MKK R ERPKISDQFADLK  L  VS  EWEAIPD+GD+SL+YK S++K ++FTP+PDH+++   + +A  V LG  TP   GTS + M+S    L+ ARG VL LKLDKMSDS++GQT V+PKGY+T+LNSLKI SDAEVGDI+K
Sbjct:   12 APANYVAGLGRGAIGFTTRSDIGPARSDDPTDIAATGIPGMGRGRGVPLPQQPAPAMMIPPGGXXXXXXXRGSGTAGVGGFGR-EVDASGDRGXXXXXXXXXXXXGAGLFNDTPYDKDDAEADDIYAQVDEHMDNRRKRRRELKQLEDMKKARRERPKISDQFADLKSSLKGVSDAEWEAIPDIGDHSLRYKASQKKSDIFTPVPDHILDTRASTTASNVVLGGDTPLQTGTSISGMTSSLTGLAEARGAVLSLKLDKMSDSISGQTVVDPKGYMTELNSLKITSDAEVGDIKK 304          
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Match: F0VZ29_9STRA (Uncharacterized protein AlNc14C1G170 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZ29_9STRA)

HSP 1 Score: 253 bits (647), Expect = 5.080e-74
Identity = 163/307 (53.09%), Postives = 197/307 (64.17%), Query Frame = 1
Query:    4 APSNYVAGLGRGAVGFTTRSDIGPARAPLPEGGAGPPGAAKDPDFGPAPKGYIAGRGRGMGDLAKANHE----GAGRGAGRGSTGAVGGT--------DLSESNFDEFSGYRER-LFGDTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREERPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQSK----RKEVFTPMPDHVIE---GARNESAVTLGSVTP---------GTSTANMSSLSHARGTVLGLKLDKMSDSVTGQTAVNPKGYLTDLNSLKINSDAEVGDIEK 837
            AP NYV GLGRGAVGFTTRSDIGPAR PL   G    GA   P         + GRGRG G     N       AGRG+G    G  G          D SESN+DEFSGY    LF DTPYD DD+EAD IYE IDE +D+RRKRRRE+  ++ +KK R+ERPKI+DQFADLK  L  VS  +W  IP++GD SLK+K +     R ++F P+PDH+I    G +++   + GS+TP         GTST+ ++ L+ ARG VL LKLDKMSDS+ GQT V+PKGYLTDLNSLKI SD E+GDI+K
Sbjct:   38 APENYVPGLGRGAVGFTTRSDIGPARNPLAPEGLAVAGAGPFPPI-------MMGRGRGRGTDVVPNEMLLPISAGRGSGTAGMGGFGRETDENEDFGDYSESNYDEFSGYTGAGLFQDTPYDKDDQEADTIYEMIDERMDSRRKRRRELKILQEVKKARQERPKIADQFADLKESLKTVSDEQWAQIPEIGDRSLKHKTNTALQIRNQMFVPVPDHLIASSTGLQSDKNASSGSITPSILGGNETPGTSTS-VTGLAEARGAVLSLKLDKMSDSIMGQTVVDPKGYLTDLNSLKITSDVEIGDIKK 336          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77797.15456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P4Y3Q2_9STRA2.180e-8355.00Pre-mRNA-processing factor (Fragment) n=1 Tax=Phyt... [more]
A0A4D9D6Q2_9STRA4.550e-8356.21Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
D7FHD2_ECTSI1.760e-8087.12PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A5D6YDN0_9STRA1.050e-7955.02Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WCC0_GLOUD2.070e-7854.52PRP1_N domain-containing protein n=1 Tax=Globispor... [more]
A0A1V9ZC51_9STRA7.250e-7854.39Pre-mRNA-processing factor n=1 Tax=Thraustotheca c... [more]
A0A067CRR5_SAPPC1.540e-7754.76PRP1_N domain-containing protein n=2 Tax=Saprolegn... [more]
A0A1V9ZAY2_9STRA2.940e-7754.58Pre-mRNA-processing factor n=1 Tax=Achlya hypogyna... [more]
A0A6A5AMU0_9STRA8.970e-7553.06PRP1_N domain-containing protein (Fragment) n=1 Ta... [more]
F0VZ29_9STRA5.080e-7453.09Uncharacterized protein AlNc14C1G170 n=1 Tax=Albug... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77797contigH-elongata_contig77797:925..2818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score273.5
Seed ortholog evalue1.1e-70
Seed eggNOG ortholog2880.D7FHD2
KEGG koko:K12855
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003824,GO:0004553,GO:0004565,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015030,GO:0015925,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016798,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0030532,GO:0031047,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035257,GO:0035258,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046540,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050681,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051427,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070920,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903798,GO:1903800,GO:1990904,GO:2000112,GO:2000628,GO:2000630,GO:2000634,GO:2000636,GO:2000637,GO:2001141
EggNOG free text desc.spliceosomal tri-snRNP complex assembly
EggNOG OGsKOG0495@1,KOG0495@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons5
Model size837
Cds size837
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77797.15456.1prot_H-elongata_contig77797.15456.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77797 925..2818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931183.5088863-CDS-H-elongata_contig77797:924..12901622931183.5088863-CDS-H-elongata_contig77797:924..1290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77797 925..1290 +
1691679732.280491-CDS-H-elongata_contig77797:924..12901691679732.280491-CDS-H-elongata_contig77797:924..1290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77797 925..1290 +
1622931183.5260303-CDS-H-elongata_contig77797:1493..16131622931183.5260303-CDS-H-elongata_contig77797:1493..1613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77797 1494..1613 +
1691679732.2909815-CDS-H-elongata_contig77797:1493..16131691679732.2909815-CDS-H-elongata_contig77797:1493..1613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77797 1494..1613 +
1622931183.5440378-CDS-H-elongata_contig77797:1916..20671622931183.5440378-CDS-H-elongata_contig77797:1916..2067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77797 1917..2067 +
1691679732.2997868-CDS-H-elongata_contig77797:1916..20671691679732.2997868-CDS-H-elongata_contig77797:1916..2067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77797 1917..2067 +
1622931183.5579357-CDS-H-elongata_contig77797:2302..24381622931183.5579357-CDS-H-elongata_contig77797:2302..2438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77797 2303..2438 +
1691679732.3093164-CDS-H-elongata_contig77797:2302..24381691679732.3093164-CDS-H-elongata_contig77797:2302..2438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77797 2303..2438 +
1622931183.5701175-CDS-H-elongata_contig77797:2754..28181622931183.5701175-CDS-H-elongata_contig77797:2754..2818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77797 2755..2818 +
1691679732.319571-CDS-H-elongata_contig77797:2754..28181691679732.319571-CDS-H-elongata_contig77797:2754..2818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77797 2755..2818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77797.15456.1

>prot_H-elongata_contig77797.15456.1 ID=prot_H-elongata_contig77797.15456.1|Name=mRNA_H-elongata_contig77797.15456.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=279bp
GAPSNYVAGLGRGAVGFTTRSDIGPARAPLPEGGAGPPGAAKDPDFGPAP
KGYIAGRGRGMGDLAKANHEGAGRGAGRGSTGAVGGTDLSESNFDEFSGY
RERLFGDTPYDHDDEEADRIYEAIDEHVDTRRKRRREVAQIEAMKKEREE
RPKISDQFADLKGHLADVSQREWEAIPDVGDYSLKYKQSKRKEVFTPMPD
HVIEGARNESAVTLGSVTPGTSTANMSSLSHARGTVLGLKLDKMSDSVTG
QTAVNPKGYLTDLNSLKINSDAEVGDIEK
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mRNA from alignment at H-elongata_contig77797:925..2818+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77797.15456.1 ID=mRNA_H-elongata_contig77797.15456.1|Name=mRNA_H-elongata_contig77797.15456.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1894bp|location=Sequence derived from alignment at H-elongata_contig77797:925..2818+ (Himanthalia elongata Himel1 dioecious)
GGTGCTCCCTCAAACTATGTCGCTGGTCTTGGCCGTGGTGCCGTTGGCTT TACCACCCGATCCGACATCGGCCCTGCCCGCGCCCCTCTACCGGAGGGCG GCGCCGGCCCGCCGGGCGCCGCGAAAGATCCAGACTTCGGGCCCGCGCCG AAGGGGTACATCGCCGGCCGAGGGCGTGGGATGGGCGACTTGGCCAAGGC CAATCATGAGGGCGCGGGGCGAGGGGCGGGGAGAGGAAGCACCGGTGCCG TTGGAGGGACCGACTTGTCCGAGAGCAACTTCGACGAGTTTTCCGGTTAC CGGGAAAGGCTATTCGGGGACACTCCGTACGATCACGATGACGAGGAGGC GGACAGGATTTACGAGGTATGGCCTAGCGTAGTACAGGTACAGCAGTACG GTGCGCGTAGAGGGTGGCAACGGTTATTACCCGCAACTATCCGAACAAAG ACCCAACATGAATTTGGTTTGCTCGTCGCGAACATTTTCTCATCCCGTGA GCGTGGTCGTTCTCACGGGGCTTGAGGCAAAACTACTCCCACCCGTGCGC GGCGGTCGTCGCAAGACAGGCTATCGACGAGCATGTAGACACGCGACGCA AGCGAAGGCGTGAGGTGGCGCAGATCGAGGCCATGAAGAAGGAGAGGGAG GAAAGGCCCAAGATCAGCGACCAGTTTGCCGATCTGAAGGTAGAAGAAGA GAGGGGTTGGATGCGTGTGTGTGTGTGTGAGGCAAGCCTTCAAATCTGAT AACCATAGCCATGTCATGTGGGGGATTCGAATATATGTTTTGTCCTTTTT TTTTGCACAACGGTGTTCACGCCATCCTTACCTCTTTTGTAATCCTTGCC TTGTGCGGAAGTCGCCATTTTGGATTTTATGTACCCCATCCAAATAATCG AAAGTTGGTATTCAGCTTCCGCGCTCCCGCGAGTTGGCGCAAACTCCCCA CAAACAAAGTGCTTGACCGTCGTCGACCTTCCGGAAACTCAGGGCCACCT GGCAGATGTCTCTCAGAGAGAGTGGGAAGCGATTCCGGACGTGGGAGACT ACAGCCTCAAGTACAAGCAGAGCAAGCGCAAGGAAGTGTTCACTCCCATG CCGGACCACGTCATCGAAGGCGCCCGCAACGAGTCTGCGGTGAGTCGCGA CGACAATGCGCTCTCACGTAGTGCGTCCGCGGATGCACGCAGTCACACGC GAAAGCCCTACAGAATGGTCGCGCAAGCGAATATCCGCCACAGGGACGCT TTCTTCCGTGTTTCTTGTACTGTACCCGTCTCTAGGACCGAGGGAGAAAT TGCGCACACAGCCGAACATTGCGCGAACGCGGCGTTGGTGGGGTTTTTTT TATCAGGTGGTGGGCACGATGGATCCAGCACTGGGGTCCGTGACTCCGGG GACGTCAACGGCGAATATGTCAAGCCTCTCGCATGCTCGAGGGACGGTGT TGGGTCTGAAGCTGGACAAGATGAGCGACAGCGTCACCGGGCAGACGGCC GTCAACCCCAAGGGGTAAGTCGAGATTTAAGGGGGGGGTTCTCGCACCGG GGGAAGTGTCGATCGAGCGCAAAGGGGATAACATAGTGATGTTAGCGAAG AGTTGAGGGGACAGTCCTTCCGCGTGTCTTTTTCTTCTCTTCGCCGAGCT TCGGGGGTTCTCTGTTTCTCTGTGGCGTTAGCGCTTTTCTTGCGGTGCCA ACTCCCTTGTCTGCTCCCTTGTCTGGGATATCTTCGCTCGTGCCTTCACC ACGCCGTCGGTTCTCCCTTCCCTTGTTTGGCGCGGCGACTGATCTTTGAC ACCGCACGCCGCTGGGGATGGGATATATAGGTACTTGACTGACCTGAACT CGCTTAAAATTAATAGCGATGCGGAGGTCGGAGACATTGAGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig77797:925..2818+

>mRNA_H-elongata_contig77797.15456.1 ID=mRNA_H-elongata_contig77797.15456.1|Name=mRNA_H-elongata_contig77797.15456.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1674bp|location=Sequence derived from alignment at H-elongata_contig77797:925..2818+ (Himanthalia elongata Himel1 dioecious)
GGTGCTCCCTCAAACTATGTCGCTGGTCTTGGCCGTGGTGCCGTTGGCTT
TACCACCCGATCCGACATCGGCCCTGCCCGCGCCCCTCTACCGGAGGGCG
GCGCCGGCCCGCCGGGCGCCGCGAAAGATCCAGACTTCGGGCCCGCGCCG
AAGGGGTACATCGCCGGCCGAGGGCGTGGGATGGGCGACTTGGCCAAGGC
CAATCATGAGGGCGCGGGGCGAGGGGCGGGGAGAGGAAGCACCGGTGCCG
TTGGAGGGACCGACTTGTCCGAGAGCAACTTCGACGAGTTTTCCGGTTAC
CGGGAAAGGCTATTCGGGGACACTCCGTACGATCACGATGACGAGGAGGC
GGACAGGATTTACGAGGGTGCTCCCTCAAACTATGTCGCTGGTCTTGGCC
GTGGTGCCGTTGGCTTTACCACCCGATCCGACATCGGCCCTGCCCGCGCC
CCTCTACCGGAGGGCGGCGCCGGCCCGCCGGGCGCCGCGAAAGATCCAGA
CTTCGGGCCCGCGCCGAAGGGGTACATCGCCGGCCGAGGGCGTGGGATGG
GCGACTTGGCCAAGGCCAATCATGAGGGCGCGGGGCGAGGGGCGGGGAGA
GGAAGCACCGGTGCCGTTGGAGGGACCGACTTGTCCGAGAGCAACTTCGA
CGAGTTTTCCGGTTACCGGGAAAGGCTATTCGGGGACACTCCGTACGATC
ACGATGACGAGGAGGCGGACAGGATTTACGAGGCTATCGACGAGCATGTA
GACACGCGACGCAAGCGAAGGCGTGAGGTGGCGCAGATCGAGGCCATGAA
GAAGGAGAGGGAGGAAAGGCCCAAGATCAGCGACCAGTTTGCCGATCTGA
AGGCTATCGACGAGCATGTAGACACGCGACGCAAGCGAAGGCGTGAGGTG
GCGCAGATCGAGGCCATGAAGAAGGAGAGGGAGGAAAGGCCCAAGATCAG
CGACCAGTTTGCCGATCTGAAGGGCCACCTGGCAGATGTCTCTCAGAGAG
AGTGGGAAGCGATTCCGGACGTGGGAGACTACAGCCTCAAGTACAAGCAG
AGCAAGCGCAAGGAAGTGTTCACTCCCATGCCGGACCACGTCATCGAAGG
CGCCCGCAACGAGTCTGCGGTGAGGCCACCTGGCAGATGTCTCTCAGAGA
GAGTGGGAAGCGATTCCGGACGTGGGAGACTACAGCCTCAAGTACAAGCA
GAGCAAGCGCAAGGAAGTGTTCACTCCCATGCCGGACCACGTCATCGAAG
GCGCCCGCAACGAGTCTGCGGTGACACTGGGGTCCGTGACTCCGGGGACG
TCAACGGCGAATATGTCAAGCCTCTCGCATGCTCGAGGGACGGTGTTGGG
TCTGAAGCTGGACAAGATGAGCGACAGCGTCACCGGGCAGACGGCCGTCA
ACCCCAAGGGCACTGGGGTCCGTGACTCCGGGGACGTCAACGGCGAATAT
GTCAAGCCTCTCGCATGCTCGAGGGACGGTGTTGGGTCTGAAGCTGGACA
AGATGAGCGACAGCGTCACCGGGCAGACGGCCGTCAACCCCAAGGGGTAC
TTGACTGACCTGAACTCGCTTAAAATTAATAGCGATGCGGAGGTCGGAGA
CATTGAGAAGGTACTTGACTGACCTGAACTCGCTTAAAATTAATAGCGAT
GCGGAGGTCGGAGACATTGAGAAG
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