mRNA_H-elongata_contig77781.15454.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77781.15454.1
Unique NamemRNA_H-elongata_contig77781.15454.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77781.15454.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 214 bits (546), Expect = 6.020e-70
Identity = 118/136 (86.76%), Postives = 120/136 (88.24%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRK---------------GLKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERS 363
            MARTKQTARKSTGGKAPRK               G+KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_H-elongata_contig77781.15454.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 214 bits (546), Expect = 6.020e-70
Identity = 118/136 (86.76%), Postives = 120/136 (88.24%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRK---------------GLKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERS 363
            MARTKQTARKSTGGKAPRK               G+KKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_H-elongata_contig77781.15454.1 vs. uniprot
Match: K3XCW6_GLOUD (Histone domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XCW6_GLOUD)

HSP 1 Score: 213 bits (543), Expect = 1.240e-69
Identity = 116/126 (92.06%), Postives = 118/126 (93.65%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRK-----GLKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERS 363
            MARTKQTARKSTGGKAPR      G+KKPHRYRPGTVALREIRRYQKSTELLI KLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRNAPATGGVKKPHRYRPGTVALREIRRYQKSTELLICKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 126
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BLAST of mRNA_H-elongata_contig77781.15454.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 213 bits (543), Expect = 2.100e-69
Identity = 117/136 (86.03%), Postives = 120/136 (88.24%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRK---------------GLKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERS 363
            MARTKQTARKSTGGKAPRK               G+KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERS
Sbjct:    7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
[Close]
BLAST of mRNA_H-elongata_contig77781.15454.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 213 bits (543), Expect = 2.740e-69
Identity = 117/136 (86.03%), Postives = 120/136 (88.24%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRK---------------GLKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERS 363
            MARTKQTARKSTGGKAPRK               G+KKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_H-elongata_contig77781.15454.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 214 bits (546), Expect = 6.590e-69
Identity = 118/136 (86.76%), Postives = 120/136 (88.24%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRK---------------GLKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERS 363
            MARTKQTARKSTGGKAPRK               G+KKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERS
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
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BLAST of mRNA_H-elongata_contig77781.15454.1 vs. uniprot
Match: UPI001A7EA027 (histone H3-like isoform X2 n=1 Tax=Simochromis diagramma TaxID=43689 RepID=UPI001A7EA027)

HSP 1 Score: 211 bits (537), Expect = 9.270e-69
Identity = 113/123 (91.87%), Postives = 118/123 (95.93%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRKGL--KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERS 363
            MARTKQTARKSTGGKAPRK L  KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQE++EAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQESSEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 123
[Close]
BLAST of mRNA_H-elongata_contig77781.15454.1 vs. uniprot
Match: Q8T7J7_EIMTE (Histone H3 n=19 Tax=Eukaryota TaxID=2759 RepID=Q8T7J7_EIMTE)

HSP 1 Score: 211 bits (538), Expect = 9.990e-69
Identity = 116/136 (85.29%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRK---------------GLKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERS 363
            MARTKQTARKSTGGKAPRK               G+KKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVAGGIKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-elongata_contig77781.15454.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 1.420e-68
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRK---------------GLKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERS 363
            MARTKQTARKSTG +APRK               G+KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-elongata_contig77781.15454.1 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 211 bits (536), Expect = 2.020e-68
Identity = 115/136 (84.56%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:    1 MARTKQTARKSTGGKAPRK---------------GLKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKGIQLARRIRGERS 363
            MARTKQTARKSTGGKAPRK               G+KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL+REIAQDFK+DLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK IQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77781.15454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GZ05_9STRA6.020e-7086.76Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A1Z5K8H0_FISSO6.020e-7086.76Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
K3XCW6_GLOUD1.240e-6992.06Histone domain-containing protein n=1 Tax=Globispo... [more]
A0A6V1P6C6_HETAK2.100e-6986.03Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A7S1BJN3_9STRA2.740e-6986.03Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
K0S7I6_THAOC6.590e-6986.76Histone domain-containing protein n=8 Tax=Bacillar... [more]
UPI001A7EA0279.270e-6991.87histone H3-like isoform X2 n=1 Tax=Simochromis dia... [more]
Q8T7J7_EIMTE9.990e-6985.29Histone H3 n=19 Tax=Eukaryota TaxID=2759 RepID=Q8T... [more]
D7G4I9_ECTSI1.420e-6886.03Similar to histone H3.2 n=2 Tax=PX clade TaxID=569... [more]
A7RJG4_NEMVE2.020e-6884.56Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77781contigH-elongata_contig77781:1180..1824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.5
Seed ortholog evalue8.3e-55
Seed eggNOG ortholog2880.D7FWI7
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size366
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931183.3604193-CDS-H-elongata_contig77781:1179..12401622931183.3604193-CDS-H-elongata_contig77781:1179..1240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77781 1180..1240 +
1691679732.2157023-CDS-H-elongata_contig77781:1179..12401691679732.2157023-CDS-H-elongata_contig77781:1179..1240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77781 1180..1240 +
1622931183.3920236-CDS-H-elongata_contig77781:1519..18241622931183.3920236-CDS-H-elongata_contig77781:1519..1824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77781 1520..1824 +
1691679732.2284205-CDS-H-elongata_contig77781:1519..18241691679732.2284205-CDS-H-elongata_contig77781:1519..1824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77781 1520..1824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77781.15454.1prot_H-elongata_contig77781.15454.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77781 1180..1824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77781.15454.1

>prot_H-elongata_contig77781.15454.1 ID=prot_H-elongata_contig77781.15454.1|Name=mRNA_H-elongata_contig77781.15454.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MARTKQTARKSTGGKAPRKGLKKPHRYRPGTVALREIRRYQKSTELLIRK
LPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHA
KRVTIMPKGIQLARRIRGERS*
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mRNA from alignment at H-elongata_contig77781:1180..1824+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77781.15454.1 ID=mRNA_H-elongata_contig77781.15454.1|Name=mRNA_H-elongata_contig77781.15454.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=645bp|location=Sequence derived from alignment at H-elongata_contig77781:1180..1824+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCGCACTAAGCAGACCGCTCGCAAGTCTACTGGAGGCAAGGCTCC
GCGTAAGGGCCGTTTTAAACATTAAAAAAAAATGTCGAAAAGTTTGACTT
TTTTTTTGAAAAACTGCGTCAAAATATTTTTTACAAACATAATGTCAGAA
GCAACTCGCTCACATTTTTCGCCTATGCATTGCTTCCAAATTTTTGACAT
CAAATTGTGACAAAAGCCTCGTTTAGTATGTTGAAATGTTTAATTTTTCA
ATTTATTTGACAAAAAAAGGCATGTTTAAAACGGCCCTAAGCAGCTGGCC
ACCAAGGCTACCCGCAAGTCTGCCCCCGCCACAGGTGGAGTGAAGAAGCC
CCACCGCTACAGACCGGGCACCGTGGCCTTACGTGAAATCCGACGTTATC
AAAAGTCAACAGAACTCCTGATCCGTAAGCTGCCCTTCCAGCGTCTTGTG
CGCGAGATCGCTCAGGATTTCAAGAGTGACCTGCGCTTTCAGGGCTCTGC
CGTGTTGGCCCTTCAAGAGGCCGCCGAGGCCTACCTTGTTGGCCTTTTCG
AAGACACTAATCTGTGCGCCATCCATGCCAAGCGTGTCACCATCATGCCC
AAGGGCATCCAGCTGGCCAGGCGCATCCGCGGAGAGCGGTCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig77781:1180..1824+

>mRNA_H-elongata_contig77781.15454.1 ID=mRNA_H-elongata_contig77781.15454.1|Name=mRNA_H-elongata_contig77781.15454.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig77781:1180..1824+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCGCACTAAGCAGACCGCTCGCAAGTCTACTGGAGGCAAGGCTCC
GCGTAAGGGCCATGGCTCGCACTAAGCAGACCGCTCGCAAGTCTACTGGA
GGCAAGGCTCCGCGTAAGGGCCTGAAGAAGCCCCACCGCTACAGACCGGG
CACCGTGGCCTTACGTGAAATCCGACGTTATCAAAAGTCAACAGAACTCC
TGATCCGTAAGCTGCCCTTCCAGCGTCTTGTGCGCGAGATCGCTCAGGAT
TTCAAGAGTGACCTGCGCTTTCAGGGCTCTGCCGTGTTGGCCCTTCAAGA
GGCCGCCGAGGCCTACCTTGTTGGCCTTTTCGAAGACACTAATCTGTGCG
CCATCCATGCCAAGCGTGTCACCATCATGCCCAAGGGCATCCAGCTGGCC
AGGCGCATCCGCGGAGAGCGGTCGTAATGAAGAAGCCCCACCGCTACAGA
CCGGGCACCGTGGCCTTACGTGAAATCCGACGTTATCAAAAGTCAACAGA
ACTCCTGATCCGTAAGCTGCCCTTCCAGCGTCTTGTGCGCGAGATCGCTC
AGGATTTCAAGAGTGACCTGCGCTTTCAGGGCTCTGCCGTGTTGGCCCTT
CAAGAGGCCGCCGAGGCCTACCTTGTTGGCCTTTTCGAAGACACTAATCT
GTGCGCCATCCATGCCAAGCGTGTCACCATCATGCCCAAGGGCATCCAGC
TGGCCAGGCGCATCCGCGGAGAGCGGTCGTAA
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