mRNA_H-elongata_contig77710.15450.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: A0A6A5ATN7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ATN7_9STRA) HSP 1 Score: 107 bits (267), Expect = 1.870e-27 Identity = 55/117 (47.01%), Postives = 77/117 (65.81%), Query Frame = 1
Query: 1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMVT-PLEVTKERYKKMMIEHVIPDIKARF 348
M +VVHV+EKW+YL + K +++V+D E + + V+ K I+KVMFL V RPR ++ T F GKIG++PF E V A R+SRNRP G VT P V + YK +++ V+P I RF
Sbjct: 1 MHDVVHVDEKWFYLTRVKKKFYVYDDEEVAARSVKSKHFITKVMFLAAVARPRYDHTRKTFFDGKIGVWPFVEVVAAKRTSRNRPKGAPVTMPQNVNSDVYKSFVLDKVVPAICERF 117
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: A0A485LCW2_9STRA (Aste57867_19494 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCW2_9STRA) HSP 1 Score: 110 bits (275), Expect = 4.230e-27 Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = 1
Query: 1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMVT-PLEVTKERYKKMMIEHVIPDIKAR 345
M N+VHV+EKW+YL + K R++VFD + L VQ K I+KVMF+ V RPR ++N F GK+G+ PF E A RSS+NRP GT +T P VT + Y+ M++ +VIP I+A+
Sbjct: 47 MHNIVHVDEKWFYLTKIKRRFYVFDDKELALRAVQSKKFITKVMFMAAVARPRYDYTKNRMFDGKLGVSPFVESTLAIRSSKNRPKGTPITSPTTVTGDVYRDMILRNVIPAIQAK 162
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: UPI000CD873B3 (uncharacterized protein LOC111883545 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD873B3) HSP 1 Score: 109 bits (273), Expect = 5.470e-26 Identity = 59/118 (50.00%), Postives = 77/118 (65.25%), Query Frame = 1
Query: 1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMVTP--LEVTKERYKKMMIEHVIPDIKARF 348
M+NV+H++EKW+Y+ + RY++ GE Q K I+KVMFL V RPR S N FSGKIGIYPFT A RSS+NR AGT+ T L VTKE + +IE V+PDI+A++
Sbjct: 167 MFNVIHIDEKWFYMSKPSRRYYLVPGEDEPLRTCQSKKFITKVMFLAAVARPRFDASGNEVFSGKIGIYPFTRLEPAKRSSKNRVAGTLETKPILSVTKEVTRSWLIEKVLPDIRAKW 284
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: A0A6A4Z6L6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z6L6_9STRA) HSP 1 Score: 109 bits (273), Expect = 8.300e-26 Identity = 55/117 (47.01%), Postives = 80/117 (68.38%), Query Frame = 1
Query: 1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMVT-PLEVTKERYKKMMIEHVIPDIKARF 348
M N VHV+EKW++L K RY+ ++ E L S ++ K I+KVMFL V RPR + + F GK+G++PF EKV A R S+NRP GT+VT P VT + Y+ M++++V+P IK++F
Sbjct: 221 MHNFVHVDEKWFFLTTVKKRYYAYEDEVLPSRYLKSKRFITKVMFLAAVARPRYDFHKKSMFDGKLGVWPFIEKVPAKRGSKNRPKGTIVTVPQTVTADVYRDMILKNVVPAIKSKF 337
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: A0A6G0WA71_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WA71_9STRA) HSP 1 Score: 105 bits (263), Expect = 9.720e-26 Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 1
Query: 1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMV-TPLEVTKERYKKMMIEHVIPDIKAR 345
M N+VHV+EKW+Y+ + K + + F ETL + KS ++KVMFL + RPR + T F GK+GI+PF E A R+S+NRP GT V +P VT E Y++MM++ V P I AR
Sbjct: 85 MHNLVHVDEKWFYVTKVKRKVYAFADETLAMRHAKSKSFVTKVMFLAAIARPRYDHHRRTFFDGKLGIWPFVECTLAKRTSKNRPKGTPVLSPQSVTAEAYREMMLQKVFPAINAR 200
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: A0A6A4E0R9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4E0R9_9STRA) HSP 1 Score: 107 bits (268), Expect = 2.410e-25 Identity = 54/114 (47.37%), Postives = 78/114 (68.42%), Query Frame = 1
Query: 1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMVT-PLEVTKERYKKMMIEHVIPDIK 339
M NVVHV+EKW+Y+ + ++ Y++ GET + + K+H +KVMFL V RPR Q F GK+G++P E A R+S+NRP GT VT P+E+TK+ Y++M+ +HVIP IK
Sbjct: 159 MQNVVHVDEKWFYVHRNRNTYYLTRGETAPRAVTKNKNHRTKVMFLVAVARPRYDAQQRMTFDGKVGLWPVVETKLAVRNSKNRPKGTPVTTPVEMTKDVYERMLTQHVIPAIK 272
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: UPI000CD98472 (uncharacterized protein LOC111910980 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD98472) HSP 1 Score: 103 bits (257), Expect = 2.640e-25 Identity = 56/118 (47.46%), Postives = 76/118 (64.41%), Query Frame = 1
Query: 1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMVTP--LEVTKERYKKMMIEHVIPDIKARF 348
M+N+VH++EKW+Y+ + RY++ GE S + K I+KVMFL V RPR N FSGKIGI+P T + A RSS+NR AGT+ T L VTKE + +IE V+P IKA++
Sbjct: 16 MFNIVHIDEKWFYISKSSKRYYLVPGEDEPSRTCKSKKFITKVMFLAAVARPRFDAFGNEIFSGKIGIFPLTTREPAKRSSKNRVAGTLETKPILSVTKEITRSWLIEKVLPAIKAKW 133
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: A0A485K9W7_9STRA (Aste57867_2336 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K9W7_9STRA) HSP 1 Score: 105 bits (261), Expect = 2.730e-25 Identity = 53/116 (45.69%), Postives = 77/116 (66.38%), Query Frame = 1
Query: 1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGT-MVTPLEVTKERYKKMMIEHVIPDIKAR 345
M++ VHV+EKW++L + K RY+VFD E + S VQ K HI+KV+FL + RPR F GK+G++PF + A SS NRP GT +++P VT E YK M++++V+ IKA+
Sbjct: 56 MYDHVHVDEKWFFLTKVKRRYYVFDNEEVASRAVQSKGHITKVLFLAAIARPRYDCRSKRFFDGKLGVWPFVKVEPAQCSSENRPRGTPIMSPKSVTGEVYKDMILKNVVAAIKAK 171
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: A0A6A4ZEB5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZEB5_9STRA) HSP 1 Score: 107 bits (267), Expect = 5.210e-25 Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 1
Query: 1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMVT-PLEVTKERYKKMMIEHVIPDI 336
M ++VHV+EKW+YL + K Y+++D E L VQ KSHI+KVMFL V RPR ++ F GK+G++PF A RSS+NRP GT+ T P+ VT + Y+ MM + V+P I
Sbjct: 187 MHDIVHVDEKWFYLTKNKSVYYIYDDEVLAIRSVQSKSHITKVMFLAAVARPRYDFARREMFDGKLGVWPFVVDEPAKRSSKNRPKGTIETKPVSVTADVYQAMMFDKVLPAI 299
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: UPI000CD8BE7B (uncharacterized protein LOC111908693 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD8BE7B) HSP 1 Score: 106 bits (265), Expect = 5.650e-25 Identity = 59/118 (50.00%), Postives = 77/118 (65.25%), Query Frame = 1
Query: 1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMVTP--LEVTKERYKKMMIEHVIPDIKARF 348
M+NVVH++EKW+Y+ + RY++ GE + K I+KVMFL V RPR +S N FSGKIGIYPFT V A RSS+NR AGT+ T L V KE K +IE V+ DI+A++
Sbjct: 168 MFNVVHIDEKWFYMSKPSKRYYLVPGEDEPLRTCKSKKFITKVMFLAAVARPRFDSSGNEVFSGKIGIYPFTTLVPAKRSSKNRVAGTLETKPILSVNKEITKSWLIEKVLSDIRAKW 285 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig77710.15450.1 >prot_H-elongata_contig77710.15450.1 ID=prot_H-elongata_contig77710.15450.1|Name=mRNA_H-elongata_contig77710.15450.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGback to top mRNA from alignment at H-elongata_contig77710:2043..2390+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig77710.15450.1 ID=mRNA_H-elongata_contig77710.15450.1|Name=mRNA_H-elongata_contig77710.15450.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at H-elongata_contig77710:2043..2390+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig77710:2043..2390+ >mRNA_H-elongata_contig77710.15450.1 ID=mRNA_H-elongata_contig77710.15450.1|Name=mRNA_H-elongata_contig77710.15450.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig77710:2043..2390+ (Himanthalia elongata Himel1 dioecious)back to top |