mRNA_H-elongata_contig77710.15450.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77710.15450.1
Unique NamemRNA_H-elongata_contig77710.15450.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: A0A6A5ATN7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ATN7_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.870e-27
Identity = 55/117 (47.01%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMVT-PLEVTKERYKKMMIEHVIPDIKARF 348
            M +VVHV+EKW+YL + K +++V+D E + +  V+ K  I+KVMFL  V RPR   ++ T F GKIG++PF E V A R+SRNRP G  VT P  V  + YK  +++ V+P I  RF
Sbjct:    1 MHDVVHVDEKWFYLTRVKKKFYVYDDEEVAARSVKSKHFITKVMFLAAVARPRYDHTRKTFFDGKIGVWPFVEVVAAKRTSRNRPKGAPVTMPQNVNSDVYKSFVLDKVVPAICERF 117          
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: A0A485LCW2_9STRA (Aste57867_19494 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCW2_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.230e-27
Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = 1
Query:    1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMVT-PLEVTKERYKKMMIEHVIPDIKAR 345
            M N+VHV+EKW+YL + K R++VFD + L    VQ K  I+KVMF+  V RPR   ++N  F GK+G+ PF E   A RSS+NRP GT +T P  VT + Y+ M++ +VIP I+A+
Sbjct:   47 MHNIVHVDEKWFYLTKIKRRFYVFDDKELALRAVQSKKFITKVMFMAAVARPRYDYTKNRMFDGKLGVSPFVESTLAIRSSKNRPKGTPITSPTTVTGDVYRDMILRNVIPAIQAK 162          
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: UPI000CD873B3 (uncharacterized protein LOC111883545 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD873B3)

HSP 1 Score: 109 bits (273), Expect = 5.470e-26
Identity = 59/118 (50.00%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMVTP--LEVTKERYKKMMIEHVIPDIKARF 348
            M+NV+H++EKW+Y+ +   RY++  GE       Q K  I+KVMFL  V RPR   S N  FSGKIGIYPFT    A RSS+NR AGT+ T   L VTKE  +  +IE V+PDI+A++
Sbjct:  167 MFNVIHIDEKWFYMSKPSRRYYLVPGEDEPLRTCQSKKFITKVMFLAAVARPRFDASGNEVFSGKIGIYPFTRLEPAKRSSKNRVAGTLETKPILSVTKEVTRSWLIEKVLPDIRAKW 284          
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: A0A6A4Z6L6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z6L6_9STRA)

HSP 1 Score: 109 bits (273), Expect = 8.300e-26
Identity = 55/117 (47.01%), Postives = 80/117 (68.38%), Query Frame = 1
Query:    1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMVT-PLEVTKERYKKMMIEHVIPDIKARF 348
            M N VHV+EKW++L   K RY+ ++ E L S  ++ K  I+KVMFL  V RPR    + + F GK+G++PF EKV A R S+NRP GT+VT P  VT + Y+ M++++V+P IK++F
Sbjct:  221 MHNFVHVDEKWFFLTTVKKRYYAYEDEVLPSRYLKSKRFITKVMFLAAVARPRYDFHKKSMFDGKLGVWPFIEKVPAKRGSKNRPKGTIVTVPQTVTADVYRDMILKNVVPAIKSKF 337          
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: A0A6G0WA71_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WA71_9STRA)

HSP 1 Score: 105 bits (263), Expect = 9.720e-26
Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMV-TPLEVTKERYKKMMIEHVIPDIKAR 345
            M N+VHV+EKW+Y+ + K + + F  ETL     + KS ++KVMFL  + RPR    + T F GK+GI+PF E   A R+S+NRP GT V +P  VT E Y++MM++ V P I AR
Sbjct:   85 MHNLVHVDEKWFYVTKVKRKVYAFADETLAMRHAKSKSFVTKVMFLAAIARPRYDHHRRTFFDGKLGIWPFVECTLAKRTSKNRPKGTPVLSPQSVTAEAYREMMLQKVFPAINAR 200          
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: A0A6A4E0R9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4E0R9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.410e-25
Identity = 54/114 (47.37%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMVT-PLEVTKERYKKMMIEHVIPDIK 339
            M NVVHV+EKW+Y+ + ++ Y++  GET   +  + K+H +KVMFL  V RPR    Q   F GK+G++P  E   A R+S+NRP GT VT P+E+TK+ Y++M+ +HVIP IK
Sbjct:  159 MQNVVHVDEKWFYVHRNRNTYYLTRGETAPRAVTKNKNHRTKVMFLVAVARPRYDAQQRMTFDGKVGLWPVVETKLAVRNSKNRPKGTPVTTPVEMTKDVYERMLTQHVIPAIK 272          
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: UPI000CD98472 (uncharacterized protein LOC111910980 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD98472)

HSP 1 Score: 103 bits (257), Expect = 2.640e-25
Identity = 56/118 (47.46%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMVTP--LEVTKERYKKMMIEHVIPDIKARF 348
            M+N+VH++EKW+Y+ +   RY++  GE   S   + K  I+KVMFL  V RPR     N  FSGKIGI+P T +  A RSS+NR AGT+ T   L VTKE  +  +IE V+P IKA++
Sbjct:   16 MFNIVHIDEKWFYISKSSKRYYLVPGEDEPSRTCKSKKFITKVMFLAAVARPRFDAFGNEIFSGKIGIFPLTTREPAKRSSKNRVAGTLETKPILSVTKEITRSWLIEKVLPAIKAKW 133          
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: A0A485K9W7_9STRA (Aste57867_2336 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K9W7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.730e-25
Identity = 53/116 (45.69%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGT-MVTPLEVTKERYKKMMIEHVIPDIKAR 345
            M++ VHV+EKW++L + K RY+VFD E + S  VQ K HI+KV+FL  + RPR        F GK+G++PF +   A  SS NRP GT +++P  VT E YK M++++V+  IKA+
Sbjct:   56 MYDHVHVDEKWFFLTKVKRRYYVFDNEEVASRAVQSKGHITKVLFLAAIARPRYDCRSKRFFDGKLGVWPFVKVEPAQCSSENRPRGTPIMSPKSVTGEVYKDMILKNVVAAIKAK 171          
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: A0A6A4ZEB5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZEB5_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.210e-25
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMVT-PLEVTKERYKKMMIEHVIPDI 336
            M ++VHV+EKW+YL + K  Y+++D E L    VQ KSHI+KVMFL  V RPR   ++   F GK+G++PF     A RSS+NRP GT+ T P+ VT + Y+ MM + V+P I
Sbjct:  187 MHDIVHVDEKWFYLTKNKSVYYIYDDEVLAIRSVQSKSHITKVMFLAAVARPRYDFARREMFDGKLGVWPFVVDEPAKRSSKNRPKGTIETKPVSVTADVYQAMMFDKVLPAI 299          
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Match: UPI000CD8BE7B (uncharacterized protein LOC111908693 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD8BE7B)

HSP 1 Score: 106 bits (265), Expect = 5.650e-25
Identity = 59/118 (50.00%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVGRPRRKTSQNTDFSGKIGIYPFTEKVRA*RSSRNRPAGTMVTP--LEVTKERYKKMMIEHVIPDIKARF 348
            M+NVVH++EKW+Y+ +   RY++  GE       + K  I+KVMFL  V RPR  +S N  FSGKIGIYPFT  V A RSS+NR AGT+ T   L V KE  K  +IE V+ DI+A++
Sbjct:  168 MFNVVHIDEKWFYMSKPSKRYYLVPGEDEPLRTCKSKKFITKVMFLAAVARPRFDSSGNEVFSGKIGIYPFTTLVPAKRSSKNRVAGTLETKPILSVNKEITKSWLIEKVLSDIRAKW 285          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77710.15450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A5ATN7_9STRA1.870e-2747.01Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A485LCW2_9STRA4.230e-2748.28Aste57867_19494 protein n=1 Tax=Aphanomyces stella... [more]
UPI000CD873B35.470e-2650.00uncharacterized protein LOC111883545 n=1 Tax=Lactu... [more]
A0A6A4Z6L6_9STRA8.300e-2647.01Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0WA71_9STRA9.720e-2646.55Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A4E0R9_9STRA2.410e-2547.37Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
UPI000CD984722.640e-2547.46uncharacterized protein LOC111910980 n=1 Tax=Lactu... [more]
A0A485K9W7_9STRA2.730e-2545.69Aste57867_2336 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6A4ZEB5_9STRA5.210e-2547.79Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI000CD8BE7B5.650e-2550.00uncharacterized protein LOC111908693 n=1 Tax=Lactu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77710contigH-elongata_contig77710:2043..2390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score73.6
Seed ortholog evalue4.7e-11
Seed eggNOG ortholog3847.GLYMA12G11564.1
EggNOG OGs2CMKC@1,2QQNW@2759,37TMG@33090,3GG9M@35493
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size234
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931183.000299-CDS-H-elongata_contig77710:2042..22761622931183.000299-CDS-H-elongata_contig77710:2042..2276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77710 2043..2276 +
1691679732.0412605-CDS-H-elongata_contig77710:2042..22761691679732.0412605-CDS-H-elongata_contig77710:2042..2276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77710 2043..2276 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931183.0136538-UTR-H-elongata_contig77710:2276..23901622931183.0136538-UTR-H-elongata_contig77710:2276..2390Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77710 2277..2390 +
1691679732.0558913-UTR-H-elongata_contig77710:2276..23901691679732.0558913-UTR-H-elongata_contig77710:2276..2390Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77710 2277..2390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77710.15450.1prot_H-elongata_contig77710.15450.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77710 2043..2276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77710.15450.1

>prot_H-elongata_contig77710.15450.1 ID=prot_H-elongata_contig77710.15450.1|Name=mRNA_H-elongata_contig77710.15450.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MWNVVHVNEKWWYLCQEKHRYFVFDGETLLSSKVQLKSHISKVMFLRVVG
RPRRKTSQNTDFSGKIGIYPFTEKVRA*
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mRNA from alignment at H-elongata_contig77710:2043..2390+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77710.15450.1 ID=mRNA_H-elongata_contig77710.15450.1|Name=mRNA_H-elongata_contig77710.15450.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at H-elongata_contig77710:2043..2390+ (Himanthalia elongata Himel1 dioecious)
ATGTGGAACGTGGTTCATGTCAACGAGAAGTGGTGGTACCTTTGCCAAGA AAAGCATAGGTACTTCGTGTTCGACGGCGAGACCTTACTCTCAAGTAAGG TTCAGCTTAAGAGCCATATCTCGAAGGTGATGTTTCTCAGAGTTGTTGGG CGGCCGAGGCGCAAAACCTCCCAAAACACCGATTTCTCCGGAAAGATCGG GATCTACCCATTTACCGAGAAAGTGCGAGCCTAGCGCAGCAGCCGGAACA GACCCGCGGGCACAATGGTCACGCCTCTGGAGGTGACGAAGGAACGATAC AAAAAGATGATGATCGAGCATGTAATCCCAGACATCAAGGCCCGATTT
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Coding sequence (CDS) from alignment at H-elongata_contig77710:2043..2390+

>mRNA_H-elongata_contig77710.15450.1 ID=mRNA_H-elongata_contig77710.15450.1|Name=mRNA_H-elongata_contig77710.15450.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig77710:2043..2390+ (Himanthalia elongata Himel1 dioecious)
ATGTGGAACGTGGTTCATGTCAACGAGAAGTGGTGGTACCTTTGCCAAGA
AAAGCATAGGTACTTCGTGTTCGACGGCGAGACCTTACTCTCAAGTAAGG
TTCAGCTTAAGAGCCATATCTCGAAGGTGATGTTTCTCAGAGTTGTTGGG
CGGCCGAGGCGCAAAACCTCCCAAAACACCGATTTCTCCGGAAAGATCGG
GATCTACCCATTTACCGAGAAAGTGCGAGCCTAGATGTGGAACGTGGTTC
ATGTCAACGAGAAGTGGTGGTACCTTTGCCAAGAAAAGCATAGGTACTTC
GTGTTCGACGGCGAGACCTTACTCTCAAGTAAGGTTCAGCTTAAGAGCCA
TATCTCGAAGGTGATGTTTCTCAGAGTTGTTGGGCGGCCGAGGCGCAAAA
CCTCCCAAAACACCGATTTCTCCGGAAAGATCGGGATCTACCCATTTACC
GAGAAAGTGCGAGCCTAG
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