mRNA_H-elongata_contig77694.15448.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77694.15448.1
Unique NamemRNA_H-elongata_contig77694.15448.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77694.15448.1 vs. uniprot
Match: A0A6H5KB87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB87_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.220e-32
Identity = 67/129 (51.94%), Postives = 88/129 (68.22%), Query Frame = 1 
Query:   28 DVDVGDDVLLRAESGDPVAMMMMGHLYIVGSDEMAIKVNYAKAEELMWKAVRNGEPAAYSYLAWMHHNGHIGGHLPPEQQPSLPPGG-DGRKNAWAGPKT----EQDMREAALEIWGKDLLAKTSWGKG 399
            D+   DD+LLRAE+GDP A MMMG+L++VGS+E  I  ++AKAE+    AVRNG+P  Y+YLAWMHHNG++GGHLPP  QP LP GG +G + A    K     E D+R  A  +WGK  +  T+ G+G
Sbjct:  119 DMAFADDMLLRAEAGDPSATMMMGYLHMVGSEETGITPDFAKAEQ----AVRNGDPGCYAYLAWMHHNGYMGGHLPPYLQPRLPDGGGEGDERAKGDGKLASRREGDLRAMAYALWGKKRVEGTNVGRG 243
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BLAST of mRNA_H-elongata_contig77694.15448.1 vs. uniprot
Match: D8LMU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU4_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.630e-31
Identity = 66/129 (51.16%), Postives = 87/129 (67.44%), Query Frame = 1 
Query:   28 DVDVGDDVLLRAESGDPVAMMMMGHLYIVGSDEMAIKVNYAKAEELMWKAVRNGEPAAYSYLAWMHHNGHIGGHLPPEQQPSLPPGG-DGRKNAWAGPKT----EQDMREAALEIWGKDLLAKTSWGKG 399
            D+   DD LLRAE+GDP A MMMG+L++VGS+EM I  ++AKAE+LMW+AV+NG+P  Y+YLAWMHHNGHIG          LP GG +G + A  G K     E D+R  A  +WGK+ +  T+ G+G
Sbjct:  328 DMAFADDALLRAEAGDPSATMMMGYLHMVGSEEMGITPDFAKAEQLMWEAVKNGDPGGYAYLAWMHHNGHIGXXXXXXXXXRLPDGGGEGDERAKGGGKLASRREGDLRAMAYALWGKERVDGTNVGRG 456
[Close]
BLAST of mRNA_H-elongata_contig77694.15448.1 vs. uniprot
Match: A0A6H5JWA9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA9_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.230e-13
Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:  151 KAEELMWKAVRNGEPAAYSYLAWMHHNGHIGGHLPPEQQPSLPPGG-DGRKNAWAGPKT----EQDMREAALEIWGKDLLAKTSWGKG 399
            +  +LMWKAVRNG+P  Y+YLAWMHHNGHIG          LP GG +G + A  G K     E D+R  A  +WG + +  T+ G+G
Sbjct:  413 RGAQLMWKAVRNGDPGGYAYLAWMHHNGHIGXXXXXXXXXRLPDGGGEGDERAKGGGKLACRREGDLRAMAYALWGTERVEGTNVGRG 500
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77694.15448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KB87_9PHAE2.220e-3251.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMU4_ECTSI1.630e-3151.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWA9_9PHAE1.230e-1345.45Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77694contigH-elongata_contig77694:886..2119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size414
Cds size411
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77694.15448.1prot_H-elongata_contig77694.15448.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77694 887..2119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931182.8141532-CDS-H-elongata_contig77694:886..11351622931182.8141532-CDS-H-elongata_contig77694:886..1135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77694 887..1135 -
1691679731.9760501-CDS-H-elongata_contig77694:886..11351691679731.9760501-CDS-H-elongata_contig77694:886..1135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77694 887..1135 -
1622931182.8347495-CDS-H-elongata_contig77694:1611..16981622931182.8347495-CDS-H-elongata_contig77694:1611..1698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77694 1612..1698 -
1691679731.9866233-CDS-H-elongata_contig77694:1611..16981691679731.9866233-CDS-H-elongata_contig77694:1611..1698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77694 1612..1698 -
1622931182.8616664-CDS-H-elongata_contig77694:2044..21191622931182.8616664-CDS-H-elongata_contig77694:2044..2119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77694 2045..2119 -
1691679731.99672-CDS-H-elongata_contig77694:2044..21191691679731.99672-CDS-H-elongata_contig77694:2044..2119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77694 2045..2119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77694.15448.1

>prot_H-elongata_contig77694.15448.1 ID=prot_H-elongata_contig77694.15448.1|Name=mRNA_H-elongata_contig77694.15448.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
GLDVNAGPRDVDVGDDVLLRAESGDPVAMMMMGHLYIVGSDEMAIKVNYA
KAEELMWKAVRNGEPAAYSYLAWMHHNGHIGGHLPPEQQPSLPPGGDGRK
NAWAGPKTEQDMREAALEIWGKDLLAKTSWGKGGVSR
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mRNA from alignment at H-elongata_contig77694:886..2119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77694.15448.1 ID=mRNA_H-elongata_contig77694.15448.1|Name=mRNA_H-elongata_contig77694.15448.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1234bp|location=Sequence derived from alignment at H-elongata_contig77694:886..2119- (Himanthalia elongata Himel1 dioecious)
GGATTAGACGTGAATGCCGGGCCTCGAGATGTGGACGTGGGCGACGACGT
GCTCTTGCGCGCTGAATCTGGTGACGTGAGTCAGCCGTGTTGGCTGATAT
CGACCATTATTAAATATTAATGTAGCAAAGAGGCACATTAATTTACAAAT
TTACACGACTTATACTTTCTCGGGGGTTCGAAGGTTATTGGAAGGTATTA
TATTGCCAGGATCGTCTGGTGCGGTGCACTAGCCGCCGACACCAACGCGA
TCGCCCTGACTGACCGATCGATCGATCGATAATTGATGCCCAAAGTCACC
CCTGAACACACACACCATTATATCACGCATCGTGTGTACGAGCAACAATC
ACGGCTGAGGTGCTGACTTTCTCTTGCGTTCCAATTTCGTGACACCAACC
CCGTCACTCGATCCAACGTAGCCTGTGGCGATGATGATGATGGGGCACCT
CTATATCGTCGGGTCGGACGAGATGGCCATCAAGGTCAACTATGCGAAGG
CTGAGGAGGTAAGCGTCTTTGGCGCGTGCATGCGTGCGAGTGTGGATACG
GCAATCGCGTGGTGCTGTCTCGTCATGGCACCCTCGCGCTCGCCCGAAAA
ATTCCGAGAAAAATCCACCCTTCCTTTTTACTCCGCGGCAGAATGGGATG
ATGAAGGAGAGAATGGGATGGAATGTAGGATGAGATTGGGTGCACGCGAT
GTCATAGTCTGCACAACCTGAACCGAAGAATGATTTTCTGGGGACGCCGT
CCGCAACCCGAAACAAAACGCACTTCGTGGATCCACACTGCCACACGCCG
CTTCCCCTCTCCCCTCCTCCCCTTCTCAACCCTGCGAACGATGCTTCGTT
GGTTTGGGGTCGCTGTATGTCTTCCGTTTCTCTTTTTATAACCCTTTACA
ATACGAACGTCGCGGAACGAACGAACGAACGGGATTGAAACGTGGGGATG
AAACAAAAAATACATGGAACGGCGCGGCTTGCAGCTCATGTGGAAGGCCG
TGAGGAACGGGGAGCCCGCAGCCTATTCCTACCTGGCGTGGATGCACCAC
AATGGTCACATCGGTGGACACCTTCCGCCGGAGCAGCAGCCTTCGCTTCC
CCCGGGTGGCGATGGGAGGAAAAATGCTTGGGCGGGCCCCAAGACGGAGC
AAGATATGAGGGAGGCGGCGCTCGAGATCTGGGGAAAAGACCTCCTCGCC
AAGACGTCCTGGGGAAAGGGAGGCGTTTCTCGGC
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Coding sequence (CDS) from alignment at H-elongata_contig77694:886..2119-

>mRNA_H-elongata_contig77694.15448.1 ID=mRNA_H-elongata_contig77694.15448.1|Name=mRNA_H-elongata_contig77694.15448.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig77694:886..2119- (Himanthalia elongata Himel1 dioecious)
GGATTAGACGTGAATGCCGGGCCTCGAGATGTGGACGTGGGCGACGACGT
GCTCTTGCGCGCTGAATCTGGTGACGGATTAGACGTGAATGCCGGGCCTC
GAGATGTGGACGTGGGCGACGACGTGCTCTTGCGCGCTGAATCTGGTGAC
CCTGTGGCGATGATGATGATGGGGCACCTCTATATCGTCGGGTCGGACGA
GATGGCCATCAAGGTCAACTATGCGAAGGCTGAGGAGCCTGTGGCGATGA
TGATGATGGGGCACCTCTATATCGTCGGGTCGGACGAGATGGCCATCAAG
GTCAACTATGCGAAGGCTGAGGAGCTCATGTGGAAGGCCGTGAGGAACGG
GGAGCCCGCAGCCTATTCCTACCTGGCGTGGATGCACCACAATGGTCACA
TCGGTGGACACCTTCCGCCGGAGCAGCAGCCTTCGCTTCCCCCGGGTGGC
GATGGGAGGAAAAATGCTTGGGCGGGCCCCAAGACGGAGCAAGATATGAG
GGAGGCGGCGCTCGAGATCTGGGGAAAAGACCTCCTCGCCAAGACGTCCT
GGGGAAAGGGAGGCGTTTCTCGGCTCATGTGGAAGGCCGTGAGGAACGGG
GAGCCCGCAGCCTATTCCTACCTGGCGTGGATGCACCACAATGGTCACAT
CGGTGGACACCTTCCGCCGGAGCAGCAGCCTTCGCTTCCCCCGGGTGGCG
ATGGGAGGAAAAATGCTTGGGCGGGCCCCAAGACGGAGCAAGATATGAGG
GAGGCGGCGCTCGAGATCTGGGGAAAAGACCTCCTCGCCAAGACGTCCTG
GGGAAAGGGAGGCGTTTCTCGG
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