mRNA_H-elongata_contig77614.15445.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: D7G9E0_ECTSI (PS II complex 12 kDa extrinsic protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9E0_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 2.180e-23 Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 1
Query: 16 PPCRLSS--TVMSAESSPAASRGDFLKSAASVAAVFGLAAAPVIAEVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
P R+S+ T MSAES ASRGDFLKSAA AA+ GLAA P +AEVDNPVVPFLGGG+KIDVNNANVRAYIKL GM
Sbjct: 24 PAARMSARTTTMSAESP--ASRGDFLKSAAGAAALLGLAA-PALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGM 97
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: A0A836CCI8_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCI8_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.360e-18 Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 10 IAPPCRLSSTVMSAESSPAASRGDFLKSAASVAAVFGLAAAPVIAEVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
+AP + ST +S + P R FLKSAA+ A V AAP +AE+DNPVVPFLGGG+K+D+NNANVRAYIK+PGM
Sbjct: 19 VAPSAGVRSTQLSMTAQPV-DRMAFLKSAATAAVVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGM 94
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: L1JVD9_GUITC (PS II complex 12 kDa extrinsic protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JVD9_GUITC) HSP 1 Score: 65.1 bits (157), Expect = 1.060e-11 Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 70 SRGDFLKSAASVAAVFGLAAAPVIA--EVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
SR D +K+ A+ FG+AAAPV+A E+D VPFLGG +KID+NNANVR Y KLPGM
Sbjct: 7 SRRDLIKNVAA----FGVAAAPVLANAEIDYANVPFLGGSDKIDINNANVRVYTKLPGM 61
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: A0A1X6NM48_PORUM (PS II complex 12 kDa extrinsic protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NM48_PORUM) HSP 1 Score: 64.7 bits (156), Expect = 2.710e-11 Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 1
Query: 10 IAPPCRLSSTVMSAESSPAASRGDFLKSAASVAAVFGLAAAPVIAEVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
+A P SS MSAE PA SR L AA+ A + P +AE + VPFLGG + ID+NNANVRAY K PGM
Sbjct: 12 VAAPAARSSICMSAEDKPAVSRRAALTGAAAAALAAMAGSLPAMAETEYANVPFLGGSDIIDINNANVRAYAKYPGM 88
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: A0A7S2TDD2_PROMC (PS II complex 12 kDa extrinsic protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TDD2_PROMC) HSP 1 Score: 57.0 bits (136), Expect = 1.830e-8 Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1
Query: 34 STVMSAESSPAASRGDFLKSAASVAAVFGLAAAPVIAEVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
ST ++AE A R F K+AA+ AAV G AAAP A +D + +LGG +D+NNANVRAY+K+PGM
Sbjct: 6 STALNAE---AGRREFFSKAAAATAAVVG-AAAPANAVIDYENIGYLGGSSIVDLNNANVRAYLKMPGM 70
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: A0A7S1Z9N8_TRICV (PS II complex 12 kDa extrinsic protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z9N8_TRICV) HSP 1 Score: 57.4 bits (137), Expect = 1.870e-8 Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1
Query: 31 SSTVMSAESSPAASRGDFLKSA--ASVAAVFGLAAAPVIAEVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
SST ++AE ASR DFL A A VAAV G A A + + +N + FLGG +D+NNANVR Y+K+PGM
Sbjct: 24 SSTALNAE----ASRKDFLAGAMAAGVAAVAGAAPANAVRDYEN--IGFLGGSSTVDINNANVRVYLKMPGM 89
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: L1JC51_GUITC (PS II complex 12 kDa extrinsic protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JC51_GUITC) HSP 1 Score: 56.2 bits (134), Expect = 3.100e-8 Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 70 SRGDFLKSAASVAAVFGLAAAPVIA--EVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
SR D LK+ + AA+ AAP +A E+D +P+LGG +KIDVNNAN+R Y KLPGM
Sbjct: 8 SRRDMLKTFVAGAAI----AAPALANAEIDYANLPYLGGSDKIDVNNANIRVYTKLPGM 62
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: A0A6U4G1G5_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4G1G5_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 3.700e-8 Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 67 ASRGDFLKSAASVAAVFGLAAAPVIAEVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
A R +F AA AAV AAAP A VD + +LGG +D+NNANVR Y+K+PGM
Sbjct: 32 AGRREFFGKAAGAAAVAFAAAAPANAVVDYENIAYLGGSSTVDINNANVRVYLKMPGM 89
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: A0A7S2SQF2_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQF2_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 5.760e-8 Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 16 PPCRLSST--VMSAESSPAASRGDFL-KSAASVAAVFGLAAAPVIAEVDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
P R++ T VMSAE A R +FL K+AA+ AA+ LAA A++D + +LGGG++ID+NNANVRAY++LPGM
Sbjct: 21 PSARMARTRVVMSAE---AEGRRNFLAKTAAAAAALAPLAAN---ADIDYEGIKYLGGGDQIDLNNANVRAYLRLPGM 92
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Match: K0TEZ3_THAOC (PS II complex 12 kDa extrinsic protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEZ3_THAOC) HSP 1 Score: 55.8 bits (133), Expect = 7.190e-8 Identity = 37/70 (52.86%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 37 TVMSAESSPAASRGDFLKSAASVAAVFGLAAAPVIAE--VDNPVVPFLGGGEKIDVNNANVRAYIKLPGM 240
T ++AE AA R FL AA FG AA P A VD V +LGGG +DVNNANVRAY++LPGM
Sbjct: 26 TALNAE---AADRRSFL----GAAAAFGAAAIPAAASARVDYENVAYLGGGSTVDVNNANVRAYLRLPGM 88 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77614.15445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig77614.15445.1 >prot_H-elongata_contig77614.15445.1 ID=prot_H-elongata_contig77614.15445.1|Name=mRNA_H-elongata_contig77614.15445.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp PSIIAPPCRLSSTVMSAESSPAASRGDFLKSAASVAAVFGLAAAPVIAEVback to top mRNA from alignment at H-elongata_contig77614:1465..1707+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig77614.15445.1 ID=mRNA_H-elongata_contig77614.15445.1|Name=mRNA_H-elongata_contig77614.15445.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig77614:1465..1707+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig77614:1465..1707+ >mRNA_H-elongata_contig77614.15445.1 ID=mRNA_H-elongata_contig77614.15445.1|Name=mRNA_H-elongata_contig77614.15445.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig77614:1465..1707+ (Himanthalia elongata Himel1 dioecious)back to top |