mRNA_H-elongata_contig77595.15441.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: D7G0C8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0C8_ECTSI) HSP 1 Score: 114 bits (286), Expect = 9.870e-28 Identity = 61/89 (68.54%), Postives = 69/89 (77.53%), Query Frame = 1
Query: 1 RRYGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRRFPRL 267
RRYGASMY+ +F FSE YHRQE+VGAL+TH GAGS ETDSAL LSALA S SD GLRPFAAFIR L+DY G+TH QVR+ R+
Sbjct: 371 RRYGASMYREIFSGFSEAYHRQEVVGALITHCGAGSELETDSALSALSALA-SPSDGGSGLRPFAAFIRALMDYMQGYTHYQVRKVFRI 458
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: A0A7M7MYJ9_STRPU (Uncharacterized protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7MYJ9_STRPU) HSP 1 Score: 72.8 bits (177), Expect = 5.350e-13 Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = 1
Query: 7 YGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRR 255
+G+ +YQ F F ++Y +QE+VGAL+TH G+G AE DSAL +LS+LA S + L PFA FI+G+LDY + T QV++
Sbjct: 456 FGSKVYQTAFAAF-DVYSKQEVVGALVTHIGSGLSAEMDSALDILSSLASSHTK---DLAPFAVFIKGVLDYLDNLTMTQVKK 534
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: A0A4V1J5W5_9FUNG (Fanconi anaemia protein FANCD2 (Fragment) n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4V1J5W5_9FUNG) HSP 1 Score: 68.2 bits (165), Expect = 1.770e-11 Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 1
Query: 19 MYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVR 252
MYQA F F + Y RQE+VGAL+TH G+G E D++L L A+ + S A +RP+A FIRG+LDY + +QVR
Sbjct: 266 MYQACFTIF-DAYFRQEVVGALVTHIGSGDSCEIDTSLAALQAITLRSPAA---MRPYAIFIRGILDYIDNLNFDQVR 339
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: A0A835UL84_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UL84_VANPL) HSP 1 Score: 66.6 bits (161), Expect = 7.680e-11 Identity = 34/90 (37.78%), Postives = 57/90 (63.33%), Query Frame = 1
Query: 1 RRYGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRRFPRLF 270
R +G +Y+++F+E ++Y RQE++GALLTH G+G E +SAL L+ LAV S+ L PFA+++ G++D+ F + + +F
Sbjct: 453 RYFGIHLYKSLFEELKDIYSRQEVLGALLTHIGSGHDQEVNSALETLNLLAVRLSE---DLIPFASYLTGVMDHMENFDDANLHKIYEVF 539
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: A0A6P8ICE2_ACTTE (Fanconi anemia group D2 protein-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8ICE2_ACTTE) HSP 1 Score: 65.5 bits (158), Expect = 2.000e-10 Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 1
Query: 7 YGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRR 255
Y ++Y+ F F +LY +QEIVGAL+TH G+G E DS+L VLS L + + PFA FI+G+LDY + T +Q+R+
Sbjct: 438 YACAIYRLAFASF-DLYCKQEIVGALVTHIGSGFATEADSSLDVLSDLVETHPKI---MAPFAVFIKGILDYLDNLTLSQIRK 516
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: A0A2K2DS13_BRADI (Uncharacterized protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A2K2DS13_BRADI) HSP 1 Score: 65.5 bits (158), Expect = 2.000e-10 Identity = 34/90 (37.78%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 1 RRYGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRRFPRLF 270
R + ++ A+F+EFS+ + RQE+VG+L+TH G+G E SAL ++ +L ++SD L P A+ I G+LDY F + +R+ +F
Sbjct: 399 REFATYLFTALFEEFSDTFSRQELVGSLITHIGSGVSYEVSSALDIMISLTTNNSDE---LIPVASHITGILDYLESFHEDNLRKVYEIF 485
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: A0A833QU46_9POAL (Fanconi anemia group D2 protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QU46_9POAL) HSP 1 Score: 65.1 bits (157), Expect = 2.730e-10 Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 1
Query: 1 RRYGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRRFPRLF 270
R + ++ A+F+EF ++Y RQEI+G L+TH G+G E SAL VL L + SD L P ++ I G++DY GF + +R+ +F
Sbjct: 424 RDFAMHLFMALFEEFCDIYSRQEILGILVTHIGSGVSHEVSSALDVLVLLTSNHSDE---LIPLSSHINGIMDYLEGFNEDNLRKVYEIF 510
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: A0A8J4VII3_9ROSI (Uncharacterized protein n=7 Tax=Fagaceae TaxID=3503 RepID=A0A8J4VII3_9ROSI) HSP 1 Score: 64.7 bits (156), Expect = 3.740e-10 Identity = 33/90 (36.67%), Postives = 54/90 (60.00%), Query Frame = 1
Query: 1 RRYGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRRFPRLF 270
R +G +Y +F+EF ++Y RQE++GAL+TH G+G +E SAL ++ LA + L P ++ I G+LDY +GF+ + + F
Sbjct: 437 REFGIHIYTCLFEEFVDIYSRQEVLGALITHVGSGVTSEVQSALETMTLLASKFAQ---DLIPLSSHITGILDYLDGFSVENLHKVYEAF 523
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: UPI001C531A74 (Fanconi anemia group D2 protein homolog isoform X1 n=4 Tax=Proteaceae TaxID=4328 RepID=UPI001C531A74) HSP 1 Score: 64.3 bits (155), Expect = 5.110e-10 Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 1 RRYGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRRFPRLF 270
R+YG MY ++F+EF++ Y RQEI+GAL+TH G+ E SAL + LA ++ L P +++I G+LDY GF ++ + +F
Sbjct: 451 RQYGIHMYTSLFEEFTDNYSRQEILGALVTHVGSAVGYEVSSALDTMVLLASKYAEE---LIPLSSYINGMLDYLEGFNIEKLHKVYEVF 537
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Match: A0A3L6FVM5_MAIZE (Fanconi anemia group D2 n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6FVM5_MAIZE) HSP 1 Score: 64.3 bits (155), Expect = 5.120e-10 Identity = 33/90 (36.67%), Postives = 58/90 (64.44%), Query Frame = 1
Query: 1 RRYGASMYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDARGGLRPFAAFIRGLLDYTNGFTHNQVRRFPRLF 270
R + A ++ A+F+EF++ Y RQE+VG+L+TH G+G E SAL ++ +L ++S+ L P ++ I G+LDY F+ + +R+ +F
Sbjct: 624 REFAAYLFTALFEEFTDTYSRQELVGSLVTHIGSGVSYEVSSALDIMISLTSNNSEE---LIPISSHITGILDYLESFSEDNLRKVYDIF 710 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77595.15441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig77595.15441.1 >prot_H-elongata_contig77595.15441.1 ID=prot_H-elongata_contig77595.15441.1|Name=mRNA_H-elongata_contig77595.15441.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp MYQAMFQEFSELYHRQEIVGALLTHAGAGSVAETDSALVVLSALAVSSSDback to top mRNA from alignment at H-elongata_contig77595:150..1076+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig77595.15441.1 ID=mRNA_H-elongata_contig77595.15441.1|Name=mRNA_H-elongata_contig77595.15441.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=927bp|location=Sequence derived from alignment at H-elongata_contig77595:150..1076+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig77595:150..1076+ >mRNA_H-elongata_contig77595.15441.1 ID=mRNA_H-elongata_contig77595.15441.1|Name=mRNA_H-elongata_contig77595.15441.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig77595:150..1076+ (Himanthalia elongata Himel1 dioecious)back to top |