mRNA_H-elongata_contig77591.15440.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77591.15440.1
Unique NamemRNA_H-elongata_contig77591.15440.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77591.15440.1 vs. uniprot
Match: D7FJH2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJH2_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 6.280e-47
Identity = 73/88 (82.95%), Postives = 80/88 (90.91%), Query Frame = 1
Query:    1 CPSRQDPDERTTFIMLQRFPSPEAMSTYQNTESFRDFTDGAEDCILEPMGLYMVNERSGKLGEAVHPFGPGGEGGRDDAIYSSPANLQ 264
            C   QDP++RT F MLQRFPSPEAMS+YQNT++F+ FTDGAE+CI EPMGLYMVNERSGKLGE VHPFGPGGEGGRDDAIYSSPANLQ
Sbjct:  252 CTVNQDPEDRTAFFMLQRFPSPEAMSSYQNTDTFQSFTDGAEECIAEPMGLYMVNERSGKLGEPVHPFGPGGEGGRDDAIYSSPANLQ 339          
BLAST of mRNA_H-elongata_contig77591.15440.1 vs. uniprot
Match: A0A835YS87_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS87_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.850e-32
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 1
Query:   13 QDPDERTTFIMLQRFPSPEAMSTYQNTESFRDFTDGAEDCILEPMGLYMVNERSGKLGEAVHPFGPGGEGGRDDAIYSSPANLQ 264
            QDP ER +F MLQRFPS +AMS +Q +  F+ FTD AE  I EPMGLY+VNERSG++ E V+PFGPGGEGGRDDA++SSP NLQ
Sbjct:  203 QDPGERRSFFMLQRFPSIQAMSRHQTSAPFKAFTDAAEALIEEPMGLYLVNERSGRMTEPVYPFGPGGEGGRDDAVFSSPVNLQ 286          
BLAST of mRNA_H-elongata_contig77591.15440.1 vs. uniprot
Match: A0A835YX85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX85_9STRA)

HSP 1 Score: 123 bits (308), Expect = 6.550e-32
Identity = 55/84 (65.48%), Postives = 69/84 (82.14%), Query Frame = 1
Query:   13 QDPDERTTFIMLQRFPSPEAMSTYQNTESFRDFTDGAEDCILEPMGLYMVNERSGKLGEAVHPFGPGGEGGRDDAIYSSPANLQ 264
            QDP++R  F +LQRFPS  AMS++Q + +F+ FT  +E  + EPMGLY+VNERSGK+ E V+PFGPGGEGGRDDA+YSSPANLQ
Sbjct:  266 QDPEDRRAFFVLQRFPSMRAMSSFQTSAAFKSFTTASEALLEEPMGLYLVNERSGKMTEPVYPFGPGGEGGRDDAVYSSPANLQ 349          
BLAST of mRNA_H-elongata_contig77591.15440.1 vs. uniprot
Match: A0A7S2WVP1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVP1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.560e-20
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   13 QDPDERTTFIMLQRFPSPEAMSTYQNTESFRDFTDGAEDCILEPMGLYMVNERSGKLGEAVHPFGPGGEGGRDDAIYSSPANL 261
            QDP E+  F + +RF S +    +Q +E ++   +G +DC+  PMGLYM      K+ E  +PFGPGGEGGRDDAI+S+PAN 
Sbjct:  146 QDPQEKNCFTITERFSSLKTFYKHQESELYKTLVNGIQDCLRTPMGLYMTRNEHHKISEPRYPFGPGGEGGRDDAIFSNPANT 228          
BLAST of mRNA_H-elongata_contig77591.15440.1 vs. uniprot
Match: A0A7S2SVQ8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVQ8_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 6.600e-20
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   13 QDPDERTTFIMLQRFPSPEAMSTYQNTESFRDFTDGAEDCILEPMGLYMVNERSGKLGEAVHPFGPGGEGGRDDAIYSSPANL 261
            QDP E+  F + +RF S +    +Q +E ++   +G +DC+  PMGLYM      K+ E  +PFGPGGEGGRDDAI+S+PAN 
Sbjct:  240 QDPQEKNCFTITERFSSLKTFYKHQESELYKTLVNGIQDCLRTPMGLYMTRNEHHKISEPRYPFGPGGEGGRDDAIFSNPANT 322          
BLAST of mRNA_H-elongata_contig77591.15440.1 vs. uniprot
Match: A0A813LUA9_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LUA9_POLGL)

HSP 1 Score: 80.5 bits (197), Expect = 1.400e-16
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   13 QDPDERTTFIMLQRFPSPEAMSTYQNTESFRDFTDGAEDCILEPMGLYMVNERSGKLGEAVHPFGPGGEGGRDDAIYSS 249
            Q+ ++   F++  R+ S   M T+Q   SF+   +  E  + +P+GLY+ +E+ G +G A HPFGPGGEGGRDDAIYSS
Sbjct:  145 QNKEDPCDFVVFLRYSSMRQMETHQTGPSFKPLLEAMEQQLEQPIGLYLADEQLGHIGMARHPFGPGGEGGRDDAIYSS 223          
BLAST of mRNA_H-elongata_contig77591.15440.1 vs. uniprot
Match: A0A1X6NUX0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUX0_PORUM)

HSP 1 Score: 79.3 bits (194), Expect = 4.120e-16
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   13 QDPDERTTFIMLQRFPSPEAMSTYQNTESFRDFTDGAEDCILEPMGLYMVNERSGKLGEAVHPFGPGGEGGRDDAIY 243
            QDP +   F ++QRFP P  M  +Q+  S+  F   A+  + E +G+Y+  E  GK+G+A++P+GP GEGGRDD +Y
Sbjct:  160 QDPSDPAYFQVIQRFPGPTGMVAHQSGASYSAFVRSAQPLLAESLGVYLCKESGGKIGQALYPWGPKGEGGRDDMVY 236          
BLAST of mRNA_H-elongata_contig77591.15440.1 vs. uniprot
Match: A0A7S2PVS3_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PVS3_9DINO)

HSP 1 Score: 78.2 bits (191), Expect = 5.940e-16
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   13 QDPDERTTFIMLQRFPSPEAMSTYQNTESFRDFTDGAEDCILEPMGLYMVNERSGKLGEAVHPFGPGGEGGRDDAIYSS 249
            Q+ ++   F++L R+ S   M  +Q   SF++  D  E  + +P+GLY+++E+ G+ G A +PFGPGGEGGRDDAIYSS
Sbjct:  117 QNQEDPCDFMVLLRYESMHTMRDHQTQASFKEMLDKMEPHLEKPIGLYLMDEQFGQAGMARYPFGPGGEGGRDDAIYSS 195          
BLAST of mRNA_H-elongata_contig77591.15440.1 vs. uniprot
Match: A0A7S1JNT6_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JNT6_9ALVE)

HSP 1 Score: 78.6 bits (192), Expect = 2.360e-15
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   13 QDPDERTTFIMLQRFPSPEAMSTYQNTESFRDFTDGAED--CILEPMGLYMVNERSGKLGEAVHPFGPGGEGGRDDAIYSSPANL 261
            QDP  R  FI+++RF     +  +QN  +F+ F    +D  C+ EP+ L++V +  G++    +PFGPGGEGGRDDA++SSP NL
Sbjct:  237 QDPRGRLDFIIVERFADIPHLIRHQNEPAFKSFVAALQDDDCLEEPINLHIVGDADGQVQINRYPFGPGGEGGRDDALFSSPINL 321          
BLAST of mRNA_H-elongata_contig77591.15440.1 vs. uniprot
Match: A0A0G4H4B5_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H4B5_VITBC)

HSP 1 Score: 78.6 bits (192), Expect = 3.970e-15
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   13 QDPDERTTFIMLQRFPSPEAMSTYQNTESFRDFTDGAED--CILEPMGLYMVNERSGKLGEAVHPFGPGGEGGRDDAIYSSPANL 261
            QDP  R  FI+++RF     +  +QN  +F+ F    +D  C+ EP+ L++V +  G++    +PFGPGGEGGRDDA++SSP NL
Sbjct:  345 QDPRGRLDFIIVERFADIPHLIRHQNEPAFKSFVAALQDDDCLEEPINLHIVGDADGQVQINRYPFGPGGEGGRDDALFSSPINL 429          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77591.15440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FJH2_ECTSI6.280e-4782.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YS87_9STRA1.850e-3267.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YX85_9STRA6.550e-3265.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WVP1_9STRA1.560e-2046.99Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SVQ8_9STRA6.600e-2046.99Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A813LUA9_POLGL1.400e-1645.57Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A1X6NUX0_PORUM4.120e-1642.86Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S2PVS3_9DINO5.940e-1645.57Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A7S1JNT6_9ALVE2.360e-1543.53Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A0G4H4B5_VITBC3.970e-1543.53Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77591contigH-elongata_contig77591:117..911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.6
Seed ortholog evalue3.3e-37
Seed eggNOG ortholog2880.D7FJH2
EggNOG OGs2EVYF@1,2SXV4@2759
Ec32 ortholog descriptionDimeric alpha-beta barrel
Ec32 orthologEc-04_006110.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931181.4837718-CDS-H-elongata_contig77591:116..2331622931181.4837718-CDS-H-elongata_contig77591:116..233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77591 117..233 +
1691679731.618239-CDS-H-elongata_contig77591:116..2331691679731.618239-CDS-H-elongata_contig77591:116..233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77591 117..233 +
1622931181.501164-CDS-H-elongata_contig77591:764..9111622931181.501164-CDS-H-elongata_contig77591:764..911Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77591 765..911 +
1691679731.633872-CDS-H-elongata_contig77591:764..9111691679731.633872-CDS-H-elongata_contig77591:764..911Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77591 765..911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77591.15440.1prot_H-elongata_contig77591.15440.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77591 117..911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77591.15440.1

>prot_H-elongata_contig77591.15440.1 ID=prot_H-elongata_contig77591.15440.1|Name=mRNA_H-elongata_contig77591.15440.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
CPSRQDPDERTTFIMLQRFPSPEAMSTYQNTESFRDFTDGAEDCILEPMG
LYMVNERSGKLGEAVHPFGPGGEGGRDDAIYSSPANLQ
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mRNA from alignment at H-elongata_contig77591:117..911+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77591.15440.1 ID=mRNA_H-elongata_contig77591.15440.1|Name=mRNA_H-elongata_contig77591.15440.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=795bp|location=Sequence derived from alignment at H-elongata_contig77591:117..911+ (Himanthalia elongata Himel1 dioecious)
TGTCCGTCGCGCCAGGACCCCGACGAGCGAACCACGTTCATCATGCTCCA GCGCTTTCCCAGCCCGGAGGCCATGTCCACCTACCAGAACACGGAGTCCT TCCGAGATTTTACCGACGTGAGAGCCGTTTGCTTTGTTTGAATAGCGGGG GGGGGGGCGTATCGAGCAGGTGTACGTACGTACACGAGGACCAGGGTGTT GCCAATCTCGGAGGGGGGAGGGGGGGGCGGTTCTGGCGTGGAGAGGAGGC GTGCTCACGTAGGGGAGAGGGACGACGGTCGCCTCGAATGCAAGCCTCCA TTCGAATCTCCCTGGGCCTGACATGGAAAGGAGGCGTGTTCACGTAGGGG AAAGGAACGACGATCGCCTCGAGTGCAAGTCGCTATTCGGATCTCCCTGG GCCTGGCGCCTCGGTGATCGAGAGCCCAGCAGTTGCCTTGCCGCCTTCCT TTGGCGTTTGCCTCGACCGACTTTCGACCTCCAACAATAAGTCCCCCTCC CATCCAACCCAATACATTGATAACCAAGAAACAAAAACGGCAAGACCCCC GCTCCCTCCAAATCCCCAGCCCCGAAAAAAACAAGCCTCCATATTTTCCT CCCTTGTTCCTTCTTCCCTTGCTGTTTCTTCTCTCCTCGAGCGCACAGGG CGCCGAGGATTGCATCTTGGAACCCATGGGACTGTACATGGTCAACGAGC GGTCGGGGAAGCTGGGAGAGGCGGTGCACCCCTTCGGGCCCGGTGGGGAG GGCGGTCGAGATGACGCTATCTACTCCTCTCCCGCGAACCTTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig77591:117..911+

>mRNA_H-elongata_contig77591.15440.1 ID=mRNA_H-elongata_contig77591.15440.1|Name=mRNA_H-elongata_contig77591.15440.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig77591:117..911+ (Himanthalia elongata Himel1 dioecious)
TGTCCGTCGCGCCAGGACCCCGACGAGCGAACCACGTTCATCATGCTCCA
GCGCTTTCCCAGCCCGGAGGCCATGTCCACCTACCAGAACACGGAGTCCT
TCCGAGATTTTACCGACTGTCCGTCGCGCCAGGACCCCGACGAGCGAACC
ACGTTCATCATGCTCCAGCGCTTTCCCAGCCCGGAGGCCATGTCCACCTA
CCAGAACACGGAGTCCTTCCGAGATTTTACCGACGGCGCCGAGGATTGCA
TCTTGGAACCCATGGGACTGTACATGGTCAACGAGCGGTCGGGGAAGCTG
GGAGAGGCGGTGCACCCCTTCGGGCCCGGTGGGGAGGGCGGTCGAGATGA
CGCTATCTACTCCTCTCCCGCGAACCTTCAGGGCGCCGAGGATTGCATCT
TGGAACCCATGGGACTGTACATGGTCAACGAGCGGTCGGGGAAGCTGGGA
GAGGCGGTGCACCCCTTCGGGCCCGGTGGGGAGGGCGGTCGAGATGACGC
TATCTACTCCTCTCCCGCGAACCTTCAG
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