mRNA_H-elongata_contig77558.15436.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77558.15436.1
Unique NamemRNA_H-elongata_contig77558.15436.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77558.15436.1 vs. uniprot
Match: D8LRN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN8_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.180e-30
Identity = 54/94 (57.45%), Postives = 74/94 (78.72%), Query Frame = 1 
Query:   88 KLLKPESKVVIGLDIQQLGPISLEVNYMIHGATWQPAYELRLDSLTDSMSCTYYGVVSQSTGEDWEGVALRLSTAEPVMRETPPTLGKQNISFK 369
            K  K   +++I +D+Q+LG I LEV YM  GA+W P+Y+LR+D+ TDS+SCTYYG+V+QST EDW+GV+LRLSTAEP +  TPP LG + ++FK
Sbjct:  198 KTAKKLGRILITVDVQELGNIELEVKYMTRGASWSPSYDLRVDTQTDSVSCTYYGIVTQSTTEDWQGVSLRLSTAEPTVHGTPPALGSKTVAFK 291
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BLAST of mRNA_H-elongata_contig77558.15436.1 vs. uniprot
Match: D8LRN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN5_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 3.360e-30
Identity = 60/121 (49.59%), Postives = 84/121 (69.42%), Query Frame = 1 
Query:    7 RLIEAINKLVWKSDDIKKRETLKETSIKLLKPESKVVIGLDIQQLGPISLEVNYMIHGATWQPAYELRLDSLTDSMSCTYYGVVSQSTGEDWEGVALRLSTAEPVMRETPPTLGKQNISFK 369
            RL EAI +L  +         + + + K+ K   +++I +D+Q+LG I LEV YM  GATW P+Y+LR+D+ TDS+SCTYYG+V+QST EDW+GV+LRLSTAEP +  TPP L  + +S K
Sbjct:  209 RLKEAITELHKRPATSSASARVPKATEKVTKKPGRILITVDVQELGNIELEVKYMTRGATWSPSYDLRVDTQTDSVSCTYYGMVTQSTTEDWQGVSLRLSTAEPTVHGTPPALESKTVSLK 329
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BLAST of mRNA_H-elongata_contig77558.15436.1 vs. uniprot
Match: D8LRN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN7_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 5.940e-30
Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 1 
Query:    1 RARLIEAINKLVWKSDDIKKRETLKETSIKLLKPESKVVIGLDIQQLGPISLEVNYMIHGATWQPAYELRLDSLTDSMSCTYYGVVSQSTGEDWEGVALRLSTAEPVMRETPPTLGKQNISFK 369
            R RL EAI +L   S       +    +    K   +++I +D+Q+LG I LEV YM  GA+W P+Y+LR+D+ TDS+SCTYYG+V+QST EDW+GV+LRLSTAEP +  TPP LG + +  K
Sbjct:  198 RQRLTEAIAELQKPSSASNVAASAGNVAAMATKKPGRILITVDVQELGNIELEVKYMTRGASWSPSYDLRVDTQTDSVSCTYYGMVTQSTSEDWQGVSLRLSTAEPTVHGTPPALGSKTLCIK 320
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BLAST of mRNA_H-elongata_contig77558.15436.1 vs. uniprot
Match: D8LRN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN6_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.340e-29
Identity = 52/91 (57.14%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:   97 KPESKVVIGLDIQQLGPISLEVNYMIHGATWQPAYELRLDSLTDSMSCTYYGVVSQSTGEDWEGVALRLSTAEPVMRETPPTLGKQNISFK 369
            K   +++I +D+Q+LG I L+V YM  GA+W P+Y+LR+D+ TDS+SCTYYG+V+QST EDW+GV+LRLSTAEP +  TPP LG + +S K
Sbjct:  200 KNPGRILITVDVQELGNIELQVKYMTSGASWSPSYDLRVDTQTDSVSCTYYGMVTQSTSEDWQGVSLRLSTAEPTVHGTPPVLGSKTVSIK 290
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BLAST of mRNA_H-elongata_contig77558.15436.1 vs. uniprot
Match: D8LRM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM9_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 9.420e-25
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:  112 VVIGLDIQQL-GPISLEVNYMIHGATWQPAYELRLDSLTDSMSCTYYGVVSQSTGEDWEGVALRLSTAEPVMRETPPTLGKQNISFK 369
            VV+ +D+++L  PI LEV+YM   A+W P+Y LR+D+LT  MSCTY+G VSQST EDWEGVAL+LSTAEP  R TPP L  + +S K
Sbjct:  279 VVVTVDVEELLCPIELEVSYMSERASWLPSYSLRVDALTGCMSCTYFGRVSQSTNEDWEGVALKLSTAEPSARSTPPFLTTKTVSLK 365
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BLAST of mRNA_H-elongata_contig77558.15436.1 vs. uniprot
Match: A0A7S4GFX8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GFX8_9EUGL)

HSP 1 Score: 87.8 bits (216), Expect = 9.490e-18
Identity = 41/89 (46.07%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:  112 VVIGLDIQQLGPISLEVNYMIHGATWQPAYELRL---DSLTDSMSCTYYGVVSQSTGEDWEGVALRLSTAEPVMRETPPTLGKQNISFK 369
            V I L +   GPI+L + Y++ GA+W P+Y++R+   ++   SM+ TY+GVV Q+TGE+WEGV L LST+ P    TPP    Q +SFK
Sbjct:  239 VTIELRVPNPGPIALSITYLVKGASWTPSYDMRVAVSEANEPSMTLTYFGVVKQNTGENWEGVQLALSTSSPATGGTPPLPPTQTVSFK 327
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BLAST of mRNA_H-elongata_contig77558.15436.1 vs. uniprot
Match: UPI0015806496 (mucoidy inhibitor MuiA family protein n=1 Tax=Anabaena sp. UHCC 0187 TaxID=2590018 RepID=UPI0015806496)

HSP 1 Score: 84.7 bits (208), Expect = 1.100e-16
Identity = 42/101 (41.58%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:   55 KKRETLKETSIKLLKPES----KVVIGLDIQQLGPISLEVNYMIHGATWQPAYELRLDSLTDSMSCTYYGVVSQSTGEDWEGVALRLSTAEPVMRETPPTL 345
            K+ +TL+    K+  P +     V++G+++QQ G   LE+ YMI  A+W P Y+LR++S +D +  +Y   ++QSTGEDW GV L LSTA+P     PP L
Sbjct:  176 KQLQTLRAALQKVQTPHTTENLNVIVGVEVQQPGEFELEITYMIPNASWHPLYDLRVNSASDGLHLSYLAEITQSTGEDWLGVELTLSTAKPGHSPLPPQL 276
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BLAST of mRNA_H-elongata_contig77558.15436.1 vs. uniprot
Match: A0A183DN89_9BILA (DUF4139 domain-containing protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183DN89_9BILA)

HSP 1 Score: 80.5 bits (197), Expect = 1.980e-16
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:  112 VVIGLDIQQLGPISLEVNYMIHGATWQPAYELRLDSLTDSMSCTYYGVVSQSTGEDWEGVALRLSTAEPVMRETPPTLGKQNISF 366
            V + L+ ++ G + L+++Y +  A+W P YE+R+ S T+++  +Y+G +SQ TGEDW   +L LSTA P +  T PTLG  N  F
Sbjct:   65 VCVFLESEKGGEVELDISYQVTCASWHPTYEIRVQSATNTLKLSYFGQISQCTGEDWLDTSLVLSTARPSLAGTMPTLGTLNAEF 149
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BLAST of mRNA_H-elongata_contig77558.15436.1 vs. uniprot
Match: UPI001580D5F2 (mucoidy inhibitor MuiA family protein n=2 Tax=unclassified Anabaena TaxID=2619674 RepID=UPI001580D5F2)

HSP 1 Score: 83.6 bits (205), Expect = 2.800e-16
Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = 1 
Query:   55 KKRETLKETSIKLLKPESK----VVIGLDIQQLGPISLEVNYMIHGATWQPAYELRLDSLTDSMSCTYYGVVSQSTGEDWEGVALRLSTAEPVMRETPPTL 345
            K+ +TL+    K+  P+ K    V++ +++ Q G   LE+ YM   A WQP Y+LR++S  D ++ TY   ++QSTGEDW GV L LSTA+P     PP L
Sbjct:  176 KQLQTLRTALQKIQTPQPKEHLNVIVAVEVTQPGEFELEIAYMTPNANWQPLYDLRVNSANDGLNLTYLAEITQSTGEDWLGVELTLSTAKPGHNTLPPQL 276
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BLAST of mRNA_H-elongata_contig77558.15436.1 vs. uniprot
Match: K9X063_9NOST (Uncharacterized protein n=3 Tax=Cylindrospermum TaxID=56106 RepID=K9X063_9NOST)

HSP 1 Score: 82.4 bits (202), Expect = 7.140e-16
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:   94 LKPESKVVIGLDIQQLGPISLEVNYMIHGATWQPAYELRLDSLTDSMSCTYYGVVSQSTGEDWEGVALRLSTAEPVMRETPPTLGKQNIS 363
            L+    +++ +++   G   LEV+Y+++ A+W P Y+LR+DS+ D +  +Y   V+QSTGEDW GVAL LSTA+P +   PP L    IS
Sbjct:  198 LQESLSLIVAVEVADAGEFELEVSYVVNRASWSPLYDLRVDSIRDIVHLSYLAEVTQSTGEDWLGVALTLSTAKPGLGTIPPKLQPWYIS 287
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77558.15436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRN8_ECTSI1.180e-3057.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN5_ECTSI3.360e-3049.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN7_ECTSI5.940e-3048.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN6_ECTSI1.340e-2957.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRM9_ECTSI9.420e-2559.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4GFX8_9EUGL9.490e-1846.07Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
UPI00158064961.100e-1641.58mucoidy inhibitor MuiA family protein n=1 Tax=Anab... [more]
A0A183DN89_9BILA1.980e-1641.18DUF4139 domain-containing protein n=1 Tax=Gongylon... [more]
UPI001580D5F22.800e-1641.58mucoidy inhibitor MuiA family protein n=2 Tax=uncl... [more]
K9X063_9NOST7.140e-1642.22Uncharacterized protein n=3 Tax=Cylindrospermum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77558contigH-elongata_contig77558:413..2192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue2.2e-26
Seed eggNOG ortholog2880.D8LRN8
GOsGO:0003674,GO:0005488,GO:0005515
EggNOG free text desc.Domain of unknown function (DUF4139)
EggNOG OGs28Q1A@1,2QWQ0@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size369
Cds size369
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77558.15436.1prot_H-elongata_contig77558.15436.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77558 413..2192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931181.2584746-CDS-H-elongata_contig77558:412..5711622931181.2584746-CDS-H-elongata_contig77558:412..571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77558 413..571 +
1691679731.530934-CDS-H-elongata_contig77558:412..5711691679731.530934-CDS-H-elongata_contig77558:412..571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77558 413..571 +
1622931181.275015-CDS-H-elongata_contig77558:1153..12801622931181.275015-CDS-H-elongata_contig77558:1153..1280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77558 1154..1280 +
1691679731.5429459-CDS-H-elongata_contig77558:1153..12801691679731.5429459-CDS-H-elongata_contig77558:1153..1280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77558 1154..1280 +
1622931181.2873967-CDS-H-elongata_contig77558:2109..21921622931181.2873967-CDS-H-elongata_contig77558:2109..2192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77558 2110..2192 +
1691679731.553208-CDS-H-elongata_contig77558:2109..21921691679731.553208-CDS-H-elongata_contig77558:2109..2192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77558 2110..2192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77558.15436.1

>prot_H-elongata_contig77558.15436.1 ID=prot_H-elongata_contig77558.15436.1|Name=mRNA_H-elongata_contig77558.15436.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
RARLIEAINKLVWKSDDIKKRETLKETSIKLLKPESKVVIGLDIQQLGPI
SLEVNYMIHGATWQPAYELRLDSLTDSMSCTYYGVVSQSTGEDWEGVALR
LSTAEPVMRETPPTLGKQNISFK
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mRNA from alignment at H-elongata_contig77558:413..2192+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77558.15436.1 ID=mRNA_H-elongata_contig77558.15436.1|Name=mRNA_H-elongata_contig77558.15436.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1780bp|location=Sequence derived from alignment at H-elongata_contig77558:413..2192+ (Himanthalia elongata Himel1 dioecious)
CGAGCAAGGTTGATCGAGGCAATCAACAAGCTGGTGTGGAAATCTGACGA
TATTAAGAAACGCGAGACCTTGAAAGAGACGTCGATAAAGCTACTGAAGC
CCGAGAGCAAGGTTGTGATCGGTCTGGATATCCAGCAGCTCGGCCCCATC
AGCTTAGAGGTTAGCTCCCTCTCTCCCACGATTAAAACAGACTCACAGGC
GTGCGGGTGGGCGGGTGTGTACTTCTCCTTAAATTCCTGCCAATCGTGGT
GCAGCCATTCTTTTGGGAGTTATAATATTACCCCCATCTCCGAGGGCGGG
TCCCGCTATGGATGGACATGGCTTGCTCGCCAAATGTCGATACCCTGTTG
ATGACTTGGTCCTATATAAAGTGTATAGGCTGTAAAGTGTAAAATCGTTG
AGTTTACTGCAGTGTGTGTGTGTGTGTGTTTTTTTGGGGGGTTTTTTTGT
CGGTTGGTGGTTGCAATGACTCAAAACGAGTGTCCTCCTTCTAAAAAGTG
ACTTTTGGTAAGGCGTCAAAATTCGTAAATATTTCACCCGTAAAGAATCT
CCAGTTTCCCTAAAACATACGGAAAAATGAACACTAAATAGCCACTCCCC
AAGTCTCAAGGATCTCCATGCTTGACTTGACTTTCTTCCTACTGTACTTG
TAGATCATTGTAGATCATCATCATCGCGACGTCTGTTGGACGTAATTGGT
AACCCCTCCACGTGCTGACGGCTGAAACGTGAGGCCATCAGGTGAATTAC
ATGATCCACGGGGCGACTTGGCAGCCGGCGTACGAGCTCAGACTGGACTC
GCTGACGGACTCCATGTCTTGCACCTATTACGGTGTGGTGTCTCAGAGTA
CTGGGGAAGACTGGGAAGGTAGGGCCGTCATTCTCGAAGAGACCCTCAAA
AGGGGAGGGATCGGAGGAACAAGGCCGTACCGTGGAGAGTTGTGTGATAC
ATGGGATCGGTGTCTCCGAGCCAGGGGGAATCATGCTCGCCCTCTTTCGT
GCCCAAGCTTTTGGTCGAAATCCCTCCTTTTCCCCTTTCCAGGAACCCCT
CATTCCTTCCATTCCTATGCGGCCGCGACTGATGTTTTCATTGATTTTTT
TCTCGTTCACCTGTCAAGAAAAATATTAGCCTACTGCCTTATTGCATCTC
ACCCGTCTCCCCATCGTCCCTCAGCCTAGTCTTTTTCCATTAGTCTCGCC
TCTCGCCCAGGCGCTCAAGTATCGAATCGCACGTCGGAGGCTATGTTTCC
TTCAGCGTCTGGCAAAAAAAAAAAAAAAACCCCCCCCCGCACACCCCCCC
CCGCGCGTTTGTTTTTGTTTTTCATNNNNNNNNNNGCGCTGCACGCGGTA
CCGCCGGCGTCGGGTCGTGTTTTTGCGGTCGGGGCGTGCTCCCCCCCCCC
CCCCCCGCGTATCTCGAGCGCTCTGTTTTTGTTTATGATTCCCACGGCCG
CCAGAAAGTTTCTCGCGCGCGCCATCGGCACGAAACCTTCTCCCTCCTCC
TCTCGATGACACAAATCGTTTTTCTTCTTTTTCCATATGGTGTGTTTTTT
CTACTACCTTGTGACCACGGGCTGGATTTTGGCATCATCTTATGTGAGAA
TTCAAAAAAAAAGAAGGATCTCGGTGGTTTTATTACTGGTCGTCGTCGTA
ATTGTCATCTTGCCTTTTGTGCCGGGATTTGCGTTCTCTCTTGGCAGGCG
TCGCTCTGAGACTGTCAACAGCTGAACCCGTCATGCGCGAGACTCCGCCT
ACACTTGGGAAGCAAAATATCAGCTTCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig77558:413..2192+

>mRNA_H-elongata_contig77558.15436.1 ID=mRNA_H-elongata_contig77558.15436.1|Name=mRNA_H-elongata_contig77558.15436.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig77558:413..2192+ (Himanthalia elongata Himel1 dioecious)
CGAGCAAGGTTGATCGAGGCAATCAACAAGCTGGTGTGGAAATCTGACGA
TATTAAGAAACGCGAGACCTTGAAAGAGACGTCGATAAAGCTACTGAAGC
CCGAGAGCAAGGTTGTGATCGGTCTGGATATCCAGCAGCTCGGCCCCATC
AGCTTAGAGCGAGCAAGGTTGATCGAGGCAATCAACAAGCTGGTGTGGAA
ATCTGACGATATTAAGAAACGCGAGACCTTGAAAGAGACGTCGATAAAGC
TACTGAAGCCCGAGAGCAAGGTTGTGATCGGTCTGGATATCCAGCAGCTC
GGCCCCATCAGCTTAGAGGTGAATTACATGATCCACGGGGCGACTTGGCA
GCCGGCGTACGAGCTCAGACTGGACTCGCTGACGGACTCCATGTCTTGCA
CCTATTACGGTGTGGTGTCTCAGAGTACTGGGGAAGACTGGGAAGGTGAA
TTACATGATCCACGGGGCGACTTGGCAGCCGGCGTACGAGCTCAGACTGG
ACTCGCTGACGGACTCCATGTCTTGCACCTATTACGGTGTGGTGTCTCAG
AGTACTGGGGAAGACTGGGAAGGCGTCGCTCTGAGACTGTCAACAGCTGA
ACCCGTCATGCGCGAGACTCCGCCTACACTTGGGAAGCAAAATATCAGCT
TCAAGGCGTCGCTCTGAGACTGTCAACAGCTGAACCCGTCATGCGCGAGA
CTCCGCCTACACTTGGGAAGCAAAATATCAGCTTCAAG
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