mRNA_H-elongata_contig77465.15428.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77465.15428.1
Unique NamemRNA_H-elongata_contig77465.15428.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77465.15428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77465contigH-elongata_contig77465:323..855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size208
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77465.15428.1prot_H-elongata_contig77465.15428.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77465 349..855 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.3931973-UTR-H-elongata_contig77465:322..3481622931180.3931973-UTR-H-elongata_contig77465:322..348Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77465 323..348 +
1691679731.1491342-UTR-H-elongata_contig77465:322..3481691679731.1491342-UTR-H-elongata_contig77465:322..348Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77465 323..348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.407435-CDS-H-elongata_contig77465:348..4291622931180.407435-CDS-H-elongata_contig77465:348..429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77465 349..429 +
1691679731.1590238-CDS-H-elongata_contig77465:348..4291691679731.1590238-CDS-H-elongata_contig77465:348..429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77465 349..429 +
1622931180.4212263-CDS-H-elongata_contig77465:756..8551622931180.4212263-CDS-H-elongata_contig77465:756..855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77465 757..855 +
1691679731.1702101-CDS-H-elongata_contig77465:756..8551691679731.1702101-CDS-H-elongata_contig77465:756..855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77465 757..855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77465.15428.1

>prot_H-elongata_contig77465.15428.1 ID=prot_H-elongata_contig77465.15428.1|Name=mRNA_H-elongata_contig77465.15428.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
MPEDEESRRGILQTLSAAAVERNQRTRAAASTIDGPTDENNNRGLVTGAN
RANSNNGRQS
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mRNA from alignment at H-elongata_contig77465:323..855+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77465.15428.1 ID=mRNA_H-elongata_contig77465.15428.1|Name=mRNA_H-elongata_contig77465.15428.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=533bp|location=Sequence derived from alignment at H-elongata_contig77465:323..855+ (Himanthalia elongata Himel1 dioecious)
AGGATGGGTTGCAAGCGGTGGCGGAAATGCCCGAAGATGAAGAAAGCCGC
CGAGGAATCCTGCAAACCCTTTCCGCCGCCGCTGTCGAGCGAAATCAACG
GACCCGAGTGAGTTTTTTTGTGACACTACTTTTTGTAACTGGAATTTAAG
TTTTGTTAATCATTTAGTATGTAAAATAACAGGTCGAGTTCCGTAGGGGT
TAATAAATATAAATGAGGACTACTTACACCTGCACATTTTTTTCTCCCTT
TTAAGGAACCGTGCTTTTGGAGCGTCTGTTTTCGTAAAGTTTGGGTCGCA
ATAAGAAGTCCTTCTCCATTTAATCCCATTAAAAAAAAATCTCGAACTCT
TTTCCATTTATATAGTTTTGTTTTGACTGTAACTCGTTTGTCATTGTTGC
CATTTTGTATTTATACTTCATCTTTCCCTCCCAGGCCGCGGCCAGCACAA
TTGACGGCCCCACCGACGAAAACAACAACCGCGGTCTAGTTACGGGAGCT
AACAGGGCGAACAGTAACAACGGCCGACAGTCC
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Coding sequence (CDS) from alignment at H-elongata_contig77465:323..855+

>mRNA_H-elongata_contig77465.15428.1 ID=mRNA_H-elongata_contig77465.15428.1|Name=mRNA_H-elongata_contig77465.15428.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig77465:323..855+ (Himanthalia elongata Himel1 dioecious)
ATGCCCGAAGATGAAGAAAGCCGCCGAGGAATCCTGCAAACCCTTTCCGC
CGCCGCTGTCGAGCGAAATCAACGGACCCGAATGCCCGAAGATGAAGAAA
GCCGCCGAGGAATCCTGCAAACCCTTTCCGCCGCCGCTGTCGAGCGAAAT
CAACGGACCCGAGCCGCGGCCAGCACAATTGACGGCCCCACCGACGAAAA
CAACAACCGCGGTCTAGTTACGGGAGCTAACAGGGCGAACAGTAACAACG
GCCGACAGTCCGCCGCGGCCAGCACAATTGACGGCCCCACCGACGAAAAC
AACAACCGCGGTCTAGTTACGGGAGCTAACAGGGCGAACAGTAACAACGG
CCGACAGTCC
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