mRNA_H-elongata_contig77453.15426.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77453.15426.1
Unique NamemRNA_H-elongata_contig77453.15426.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77453.15426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77453contigH-elongata_contig77453:2130..2436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size308
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.3075845-CDS-H-elongata_contig77453:2129..24291622931180.3075845-CDS-H-elongata_contig77453:2129..2429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77453 2130..2429 +
1691679731.1092706-CDS-H-elongata_contig77453:2129..24291691679731.1092706-CDS-H-elongata_contig77453:2129..2429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77453 2130..2429 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.3253853-UTR-H-elongata_contig77453:2429..24361622931180.3253853-UTR-H-elongata_contig77453:2429..2436Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77453 2430..2436 +
1691679731.1255856-UTR-H-elongata_contig77453:2429..24361691679731.1255856-UTR-H-elongata_contig77453:2429..2436Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77453 2430..2436 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77453.15426.1prot_H-elongata_contig77453.15426.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77453 2130..2429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77453.15426.1

>prot_H-elongata_contig77453.15426.1 ID=prot_H-elongata_contig77453.15426.1|Name=mRNA_H-elongata_contig77453.15426.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
VVPLFLLLYTLLKSKYTLSGPARENFKHGSDTSPSWNLGRDKSRALCVAT
TIQRPMLLRLLLTVSHQVCGVLLILLGTHLAESQPDLVAFCSSSAEQGK*
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mRNA from alignment at H-elongata_contig77453:2130..2436+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77453.15426.1 ID=mRNA_H-elongata_contig77453.15426.1|Name=mRNA_H-elongata_contig77453.15426.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=307bp|location=Sequence derived from alignment at H-elongata_contig77453:2130..2436+ (Himanthalia elongata Himel1 dioecious)
GTTGTACCGCTTTTTTTACTGTTGTACACCCTCTTGAAATCAAAATATAC
ACTCTCTGGTCCAGCCCGCGAAAACTTCAAACATGGCAGCGACACGTCCC
CTAGCTGGAACTTGGGGCGTGACAAGTCGAGGGCGCTCTGTGTTGCAACC
ACCATTCAACGTCCCATGTTACTGCGGCTGCTTCTCACGGTCTCCCATCA
AGTCTGTGGGGTGTTGTTGATTTTGTTGGGCACACATTTAGCAGAAAGTC
AACCGGATTTGGTTGCCTTCTGCTCGTCATCAGCTGAACAGGGGAAATAA
TTTCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig77453:2130..2436+

>mRNA_H-elongata_contig77453.15426.1 ID=mRNA_H-elongata_contig77453.15426.1|Name=mRNA_H-elongata_contig77453.15426.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig77453:2130..2436+ (Himanthalia elongata Himel1 dioecious)
GTTGTACCGCTTTTTTTACTGTTGTACACCCTCTTGAAATCAAAATATAC
ACTCTCTGGTCCAGCCCGCGAAAACTTCAAACATGGCAGCGACACGTCCC
CTAGCTGGAACTTGGGGCGTGACAAGTCGAGGGCGCTCTGTGTTGCAACC
ACCATTCAACGTCCCATGTTACTGCGGCTGCTTCTCACGGTCTCCCATCA
AGTCTGTGGGGTGTTGTTGATTTTGTTGGGCACACATTTAGCAGAAAGTC
AACCGGATTTGGTTGCCTTCTGCTCGTCATCAGCTGAACAGGGGAAATAA
GTTGTACCGCTTTTTTTACTGTTGTACACCCTCTTGAAATCAAAATATAC
ACTCTCTGGTCCAGCCCGCGAAAACTTCAAACATGGCAGCGACACGTCCC
CTAGCTGGAACTTGGGGCGTGACAAGTCGAGGGCGCTCTGTGTTGCAACC
ACCATTCAACGTCCCATGTTACTGCGGCTGCTTCTCACGGTCTCCCATCA
AGTCTGTGGGGTGTTGTTGATTTTGTTGGGCACACATTTAGCAGAAAGTC
AACCGGATTTGGTTGCCTTCTGCTCGTCATCAGCTGAACAGGGGAAATAA
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