mRNA_H-elongata_contig77444.15424.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77444.15424.1
Unique NamemRNA_H-elongata_contig77444.15424.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77444.15424.1 vs. uniprot
Match: A0A6H5KM16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM16_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.680e-21
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   10 EKYLTIGRVRRFARRTRDYCRAYCYLFLLGVVAESKEMIEKMCKKQKVHRNILDMESGFLRTQ 198
            +KYLTIGRVRRFARRTRDYCRAY  + L GVV  +KE +EKM K QK HRNILDM++ FL  Q
Sbjct:   62 DKYLTIGRVRRFARRTRDYCRAYREIALRGVVIRNKEFLEKMRKIQKAHRNILDMKTSFLGDQ 124
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BLAST of mRNA_H-elongata_contig77444.15424.1 vs. uniprot
Match: A0A6H5JCU7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.700e-21
Identity = 46/63 (73.02%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   10 EKYLTIGRVRRFARRTRDYCRAYCYLFLLGVVAESKEMIEKMCKKQKVHRNILDMESGFLRTQ 198
            +KYLTIGRVRRFARRTRDYCRAY  + L GVV  +KE IEKM K QK HRNILDME+ FL  Q
Sbjct:  148 DKYLTIGRVRRFARRTRDYCRAYREIALRGVVIRNKEFIEKMRKIQKAHRNILDMETSFLGDQ 210
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BLAST of mRNA_H-elongata_contig77444.15424.1 vs. uniprot
Match: A0A6H5K836_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K836_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.050e-20
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 MSTEKYLTIGRVRRFARRTRDYCRAYCYLFLLGVVAESKEMIEKMCKKQKVHRNILDMESGFLRTQ 198
            + T+KYLT+GRVRRFARRTRD+CRAY  + L G    SK+ IEKM K QK HRNILDME+ FL  Q
Sbjct:   83 LCTDKYLTVGRVRRFARRTRDHCRAYRDIALSGGFIMSKDFIEKMRKNQKAHRNILDMETSFLGDQ 148
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BLAST of mRNA_H-elongata_contig77444.15424.1 vs. uniprot
Match: A0A6H5KQB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB9_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 6.370e-20
Identity = 46/63 (73.02%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   10 EKYLTIGRVRRFARRTRDYCRAYCYLFLLGVVAESKEMIEKMCKKQKVHRNILDMESGFLRTQ 198
            +KYLTIGRVRRFARRTRDYCRAY  + L GVV  +KE IEKM K QK HRNILDME+ FL  Q
Sbjct:  513 DKYLTIGRVRRFARRTRDYCRAYREIALRGVVIRNKEFIEKMRKIQKAHRNILDMETSFLGDQ 575
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BLAST of mRNA_H-elongata_contig77444.15424.1 vs. uniprot
Match: A0A6H5L885_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L885_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 6.540e-20
Identity = 46/63 (73.02%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   10 EKYLTIGRVRRFARRTRDYCRAYCYLFLLGVVAESKEMIEKMCKKQKVHRNILDMESGFLRTQ 198
            +KYLTIGRVRRFARRTRDYCRAY  + L GVV  +KE IEKM K QK HRNILDME+ FL  Q
Sbjct:  696 DKYLTIGRVRRFARRTRDYCRAYREIALRGVVIRNKEFIEKMRKIQKAHRNILDMETSFLGDQ 758
[Close]
BLAST of mRNA_H-elongata_contig77444.15424.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 6.570e-20
Identity = 46/63 (73.02%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   10 EKYLTIGRVRRFARRTRDYCRAYCYLFLLGVVAESKEMIEKMCKKQKVHRNILDMESGFLRTQ 198
            +KYLTIGRVRRFARRTRDYCRAY  + L GVV  +KE IEKM K QK HRNILDME+ FL  Q
Sbjct:  927 DKYLTIGRVRRFARRTRDYCRAYREIALRGVVIRNKEFIEKMRKIQKAHRNILDMETSFLGDQ 989
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BLAST of mRNA_H-elongata_contig77444.15424.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.210e-19
Identity = 46/63 (73.02%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:   10 EKYLTIGRVRRFARRTRDYCRAYCYLFLLGVVAESKEMIEKMCKKQKVHRNILDMESGFLRTQ 198
            +KYLTIGRVRRFARRTRDYCRAY  + L GVV  S E IEKM K QK HRNILDME+ FL  Q
Sbjct:  581 DKYLTIGRVRRFARRTRDYCRAYREIALSGVVIRSNEFIEKMRKIQKAHRNILDMETSFLGDQ 643
[Close]
BLAST of mRNA_H-elongata_contig77444.15424.1 vs. uniprot
Match: A0A6H5JVH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH4_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.320e-19
Identity = 45/62 (72.58%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:   13 KYLTIGRVRRFARRTRDYCRAYCYLFLLGVVAESKEMIEKMCKKQKVHRNILDMESGFLRTQ 198
            KYLTIGRVRRFARRTRDYCRAY  + L GVV  +KE IEKM K QK HRN+LDME+ FL  Q
Sbjct:  319 KYLTIGRVRRFARRTRDYCRAYREIALRGVVIRNKEFIEKMRKIQKAHRNMLDMETSFLGFQ 380
[Close]
BLAST of mRNA_H-elongata_contig77444.15424.1 vs. uniprot
Match: A0A6H5K769_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K769_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.120e-16
Identity = 41/66 (62.12%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 MSTEKYLTIGRVRRFARRTRDYCRAYCYLFLLGVVAESKEMIEKMCKKQKVHRNILDMESGFLRTQ 198
            M  EK+LTIGRVRRFARRTRDYCRAY  + L     +  +++EKM   QK HRNILDME GFL  Q
Sbjct:  319 MCREKHLTIGRVRRFARRTRDYCRAYREIQLGAADGQGLQLVEKMRNTQKAHRNILDMEPGFLGKQ 384
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BLAST of mRNA_H-elongata_contig77444.15424.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.590e-16
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    4 STEKYLTIGRVRRFARRTRDYCRAYCYLFLLGVVAESKEMIEKMCKKQKVHRNILDMESGFLRTQ 198
            S EK+LTIGRVRRFARRTRDYCRAY  + L     +  +++EKM   QK HRNILDME GFL  Q
Sbjct:  914 SMEKHLTIGRVRRFARRTRDYCRAYREIQLGAADGQGLQLVEKMRNTQKAHRNILDMEPGFLGKQ 978
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77444.15424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KM16_9PHAE2.680e-2169.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU7_9PHAE2.700e-2173.02Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K836_9PHAE4.050e-2065.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQB9_9PHAE6.370e-2073.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L885_9PHAE6.540e-2073.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L611_9PHAE6.570e-2073.02Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXL0_9PHAE1.210e-1973.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVH4_9PHAE2.320e-1972.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K769_9PHAE1.120e-1662.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN6_9PHAE1.590e-1663.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77444contigH-elongata_contig77444:1933..2133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931180.2116473-CDS-H-elongata_contig77444:1932..21331622931180.2116473-CDS-H-elongata_contig77444:1932..2133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77444 1933..2133 +
1691679731.077068-CDS-H-elongata_contig77444:1932..21331691679731.077068-CDS-H-elongata_contig77444:1932..2133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77444 1933..2133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77444.15424.1prot_H-elongata_contig77444.15424.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77444 1933..2133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77444.15424.1

>prot_H-elongata_contig77444.15424.1 ID=prot_H-elongata_contig77444.15424.1|Name=mRNA_H-elongata_contig77444.15424.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MSTEKYLTIGRVRRFARRTRDYCRAYCYLFLLGVVAESKEMIEKMCKKQK
VHRNILDMESGFLRTQ*
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mRNA from alignment at H-elongata_contig77444:1933..2133+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77444.15424.1 ID=mRNA_H-elongata_contig77444.15424.1|Name=mRNA_H-elongata_contig77444.15424.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig77444:1933..2133+ (Himanthalia elongata Himel1 dioecious)
ATGAGCACGGAAAAGTACTTGACGATCGGCCGAGTACGGCGCTTTGCCAG
ACGCACACGAGACTACTGCCGCGCTTACTGCTACCTTTTTCTGCTTGGGG
TAGTCGCCGAGAGTAAGGAGATGATCGAGAAGATGTGCAAGAAGCAGAAG
GTCCACCGAAACATACTAGACATGGAGTCTGGTTTCCTTCGCACCCAGTA
A
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Coding sequence (CDS) from alignment at H-elongata_contig77444:1933..2133+

>mRNA_H-elongata_contig77444.15424.1 ID=mRNA_H-elongata_contig77444.15424.1|Name=mRNA_H-elongata_contig77444.15424.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig77444:1933..2133+ (Himanthalia elongata Himel1 dioecious)
ATGAGCACGGAAAAGTACTTGACGATCGGCCGAGTACGGCGCTTTGCCAG
ACGCACACGAGACTACTGCCGCGCTTACTGCTACCTTTTTCTGCTTGGGG
TAGTCGCCGAGAGTAAGGAGATGATCGAGAAGATGTGCAAGAAGCAGAAG
GTCCACCGAAACATACTAGACATGGAGTCTGGTTTCCTTCGCACCCAGTA
AATGAGCACGGAAAAGTACTTGACGATCGGCCGAGTACGGCGCTTTGCCA
GACGCACACGAGACTACTGCCGCGCTTACTGCTACCTTTTTCTGCTTGGG
GTAGTCGCCGAGAGTAAGGAGATGATCGAGAAGATGTGCAAGAAGCAGAA
GGTCCACCGAAACATACTAGACATGGAGTCTGGTTTCCTTCGCACCCAGT
AA
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