mRNA_H-elongata_contig77427.15420.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77427.15420.1
Unique NamemRNA_H-elongata_contig77427.15420.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77427.15420.1 vs. uniprot
Match: UPI0006D93A63 (uncharacterized protein LOC106704261 n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0006D93A63)

HSP 1 Score: 60.8 bits (146), Expect = 3.950e-9
Identity = 31/69 (44.93%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:    7 RWVRFFRSLLNAKSDMLDPDIPKRLPQHPVACALGIEPTEEDIATAMKAIKNAQAVGPDGLPAEVLKLG 213
            RW + ++ LLN +S + D  I + +PQ+PV  AL   PT E++  A++ +KN +A GPDG+PAEV K+G
Sbjct:  200 RWKKHYQKLLNLESTVTDDTI-ESIPQYPVREALASPPTFEEVCQAIRQMKNNKAPGPDGIPAEVFKVG 267
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BLAST of mRNA_H-elongata_contig77427.15420.1 vs. uniprot
Match: UPI0006D922B9 (RNA-directed DNA polymerase from mobile element jockey-like n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0006D922B9)

HSP 1 Score: 60.1 bits (144), Expect = 4.540e-9
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    7 RWVRFFRSLLNAKSDMLDPDIPKRLPQHPVACALGIEPTEEDIATAMKAIKNAQAVGPDGLPAEVLKLG 213
            RW   ++ LLN +S + D  I + +PQ+PV  AL   PT E++  A++ +KN +A GPDG+PAEV K+G
Sbjct:   40 RWKEHYQKLLNLESTVTDDTI-ESIPQYPVREALASPPTFEEVCEAIRQMKNNKAPGPDGIPAEVFKVG 107
[Close]
BLAST of mRNA_H-elongata_contig77427.15420.1 vs. uniprot
Match: A0A6H5JRE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE2_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 7.360e-8
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 RERWVRFFRSLLNAKSDMLDPDIPKRLPQHPVACALGIEPTEEDIATAMKAIKNAQAVGPDGLPAEVLKL 210
            R+RW R+F  LLN +S  +D     R+ Q P    L   P+  ++  A++ + N +AVGPD LPAE++KL
Sbjct:   30 RQRWARWFHKLLNTRSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKL 99
[Close]
BLAST of mRNA_H-elongata_contig77427.15420.1 vs. uniprot
Match: A0A6H5KE31_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE31_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.060e-7
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 RERWVRFFRSLLNAKSDMLDPDIPKRLPQHPVACALGIEPTEEDIATAMKAIKNAQAVGPDGLPAEVLKL 210
            R+RW R+F  LLN KS  +D     R+ Q P    L   P+  ++  A++ + N +AVGPD LPAE++KL
Sbjct:   30 RQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKL 99
[Close]
BLAST of mRNA_H-elongata_contig77427.15420.1 vs. uniprot
Match: A0A6H5JY74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY74_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.060e-7
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 RERWVRFFRSLLNAKSDMLDPDIPKRLPQHPVACALGIEPTEEDIATAMKAIKNAQAVGPDGLPAEVLKL 210
            R+RW R+F  LLN KS  +D     R+ Q P    L   P+  ++  A++ + N +AVGPD LPAE++KL
Sbjct:  328 RQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKL 397
[Close]
BLAST of mRNA_H-elongata_contig77427.15420.1 vs. uniprot
Match: A0A6H5K3M1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M1_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.100e-7
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 RERWVRFFRSLLNAKSDMLDPDIPKRLPQHPVACALGIEPTEEDIATAMKAIKNAQAVGPDGLPAEVLKL 210
            R+RW R+F  LLN KS  +D     R+ Q P    L   P+  ++  A++ + N +AVGPD LPAE++KL
Sbjct:  436 RQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKL 505
[Close]
BLAST of mRNA_H-elongata_contig77427.15420.1 vs. uniprot
Match: A0A6H5KKB2_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB2_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.100e-7
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 RERWVRFFRSLLNAKSDMLDPDIPKRLPQHPVACALGIEPTEEDIATAMKAIKNAQAVGPDGLPAEVLKL 210
            R+RW R+F  LLN KS  +D     R+ Q P    L   P+  ++  A++ + N +AVGPD LPAE++KL
Sbjct:   30 RQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKL 99
[Close]
BLAST of mRNA_H-elongata_contig77427.15420.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.130e-7
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 RERWVRFFRSLLNAKSDMLDPDIPKRLPQHPVACALGIEPTEEDIATAMKAIKNAQAVGPDGLPAEVLKL 210
            R+RW R+F  LLN KS  +D     R+ Q P    L   P+  ++  A++ + N +AVGPD LPAE++KL
Sbjct:  308 RQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKL 377
[Close]
BLAST of mRNA_H-elongata_contig77427.15420.1 vs. uniprot
Match: A0A6H5JUB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB0_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.140e-7
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 RERWVRFFRSLLNAKSDMLDPDIPKRLPQHPVACALGIEPTEEDIATAMKAIKNAQAVGPDGLPAEVLKL 210
            R+RW R+F  LLN KS  +D     R+ Q P    L   P+  ++  A++ + N +AVGPD LPAE++KL
Sbjct:   93 RQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKL 162
[Close]
BLAST of mRNA_H-elongata_contig77427.15420.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.140e-7
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 RERWVRFFRSLLNAKSDMLDPDIPKRLPQHPVACALGIEPTEEDIATAMKAIKNAQAVGPDGLPAEVLKL 210
            R+RW R+F  LLN KS  +D     R+ Q P    L   P+  ++  A++ + N +AVGPD LPAE++KL
Sbjct:  446 RQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKL 515
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77427.15420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0006D93A633.950e-944.93uncharacterized protein LOC106704261 n=1 Tax=Latim... [more]
UPI0006D922B94.540e-944.93RNA-directed DNA polymerase from mobile element jo... [more]
A0A6H5JRE2_9PHAE7.360e-840.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KE31_9PHAE3.060e-741.43Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JY74_9PHAE3.060e-741.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3M1_9PHAE3.100e-741.43Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KKB2_9PHAE3.100e-741.43Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8Z5_9PHAE3.130e-741.43Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JUB0_9PHAE3.140e-741.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC90_9PHAE3.140e-741.43Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77427contigH-elongata_contig77427:2768..2980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.9627814-CDS-H-elongata_contig77427:2767..29801622931179.9627814-CDS-H-elongata_contig77427:2767..2980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77427 2768..2980 +
1691679730.983731-CDS-H-elongata_contig77427:2767..29801691679730.983731-CDS-H-elongata_contig77427:2767..2980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77427 2768..2980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77427.15420.1prot_H-elongata_contig77427.15420.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77427 2768..2980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77427.15420.1

>prot_H-elongata_contig77427.15420.1 ID=prot_H-elongata_contig77427.15420.1|Name=mRNA_H-elongata_contig77427.15420.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
RERWVRFFRSLLNAKSDMLDPDIPKRLPQHPVACALGIEPTEEDIATAMK
AIKNAQAVGPDGLPAEVLKLG
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mRNA from alignment at H-elongata_contig77427:2768..2980+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77427.15420.1 ID=mRNA_H-elongata_contig77427.15420.1|Name=mRNA_H-elongata_contig77427.15420.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig77427:2768..2980+ (Himanthalia elongata Himel1 dioecious)
CGCGAGAGGTGGGTGCGATTCTTCCGCTCGCTATTGAACGCGAAATCCGA
CATGCTCGATCCCGACATCCCGAAGAGGCTGCCGCAGCATCCAGTTGCGT
GTGCCCTCGGGATCGAGCCCACGGAGGAGGATATTGCCACAGCGATGAAG
GCAATAAAAAACGCGCAAGCAGTGGGACCGGATGGCCTTCCCGCGGAAGT
GCTGAAACTCGGA
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Coding sequence (CDS) from alignment at H-elongata_contig77427:2768..2980+

>mRNA_H-elongata_contig77427.15420.1 ID=mRNA_H-elongata_contig77427.15420.1|Name=mRNA_H-elongata_contig77427.15420.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig77427:2768..2980+ (Himanthalia elongata Himel1 dioecious)
CGCGAGAGGTGGGTGCGATTCTTCCGCTCGCTATTGAACGCGAAATCCGA
CATGCTCGATCCCGACATCCCGAAGAGGCTGCCGCAGCATCCAGTTGCGT
GTGCCCTCGGGATCGAGCCCACGGAGGAGGATATTGCCACAGCGATGAAG
GCAATAAAAAACGCGCAAGCAGTGGGACCGGATGGCCTTCCCGCGGAAGT
GCTGAAACTCGGACGCGAGAGGTGGGTGCGATTCTTCCGCTCGCTATTGA
ACGCGAAATCCGACATGCTCGATCCCGACATCCCGAAGAGGCTGCCGCAG
CATCCAGTTGCGTGTGCCCTCGGGATCGAGCCCACGGAGGAGGATATTGC
CACAGCGATGAAGGCAATAAAAAACGCGCAAGCAGTGGGACCGGATGGCC
TTCCCGCGGAAGTGCTGAAACTCGGA
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