mRNA_H-elongata_contig77424.15419.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77424.15419.1
Unique NamemRNA_H-elongata_contig77424.15419.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77424.15419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77424contigH-elongata_contig77424:649..1166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size518
Cds size366
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.8955224-UTR-H-elongata_contig77424:648..8001622931179.8955224-UTR-H-elongata_contig77424:648..800Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77424 649..800 +
1691679730.9676774-UTR-H-elongata_contig77424:648..8001691679730.9676774-UTR-H-elongata_contig77424:648..800Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77424 649..800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.9125996-CDS-H-elongata_contig77424:800..11661622931179.9125996-CDS-H-elongata_contig77424:800..1166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77424 801..1166 +
1691679730.97576-CDS-H-elongata_contig77424:800..11661691679730.97576-CDS-H-elongata_contig77424:800..1166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77424 801..1166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77424.15419.1prot_H-elongata_contig77424.15419.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77424 801..1166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77424.15419.1

>prot_H-elongata_contig77424.15419.1 ID=prot_H-elongata_contig77424.15419.1|Name=mRNA_H-elongata_contig77424.15419.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MILLQQIFEMAYTTSDTVCSVSHMFTVPIAGVGEAKRRIIGPWCCLNRLH
PLLKLPRRLLAQYRRTRSGKCHRPENVWPVEIGIDPMTGDGRDGRRREKR
EDREDLGSMHYIQSVLRELAG*
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mRNA from alignment at H-elongata_contig77424:649..1166+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77424.15419.1 ID=mRNA_H-elongata_contig77424.15419.1|Name=mRNA_H-elongata_contig77424.15419.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=518bp|location=Sequence derived from alignment at H-elongata_contig77424:649..1166+ (Himanthalia elongata Himel1 dioecious)
CATGTAGGTGAGGTTTGACGTGAAGGTGGCGGCGGCCTCCTGTCTTCTGT
GGACGGGAATATCAATTTCCCCCTTTCGAGGCAGCGTTCTCCACATACTA
CATAAACACCTCGCGACTCCTCCTGAGCTCGCACTCTTTTGACGCGACGT
GGATGATACTGCTGCAGCAGATATTCGAAATGGCCTATACTACATCCGAT
ACCGTATGTAGTGTATCCCACATGTTCACTGTACCAATAGCGGGTGTGGG
GGAAGCAAAACGTAGAATAATCGGTCCATGGTGTTGCCTAAATAGGCTGC
ACCCGTTACTCAAGCTACCCCGAAGACTGCTGGCTCAGTATCGGCGGACT
CGCAGTGGTAAATGCCATCGGCCTGAAAATGTGTGGCCTGTTGAAATCGG
GATTGACCCAATGACGGGTGATGGTAGAGATGGACGCCGTCGCGAAAAAC
GAGAGGATCGAGAGGATCTTGGGAGTATGCACTATATTCAGTCCGTGCTG
AGAGAATTGGCAGGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig77424:649..1166+

>mRNA_H-elongata_contig77424.15419.1 ID=mRNA_H-elongata_contig77424.15419.1|Name=mRNA_H-elongata_contig77424.15419.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig77424:649..1166+ (Himanthalia elongata Himel1 dioecious)
ATGATACTGCTGCAGCAGATATTCGAAATGGCCTATACTACATCCGATAC
CGTATGTAGTGTATCCCACATGTTCACTGTACCAATAGCGGGTGTGGGGG
AAGCAAAACGTAGAATAATCGGTCCATGGTGTTGCCTAAATAGGCTGCAC
CCGTTACTCAAGCTACCCCGAAGACTGCTGGCTCAGTATCGGCGGACTCG
CAGTGGTAAATGCCATCGGCCTGAAAATGTGTGGCCTGTTGAAATCGGGA
TTGACCCAATGACGGGTGATGGTAGAGATGGACGCCGTCGCGAAAAACGA
GAGGATCGAGAGGATCTTGGGAGTATGCACTATATTCAGTCCGTGCTGAG
AGAATTGGCAGGTTGAATGATACTGCTGCAGCAGATATTCGAAATGGCCT
ATACTACATCCGATACCGTATGTAGTGTATCCCACATGTTCACTGTACCA
ATAGCGGGTGTGGGGGAAGCAAAACGTAGAATAATCGGTCCATGGTGTTG
CCTAAATAGGCTGCACCCGTTACTCAAGCTACCCCGAAGACTGCTGGCTC
AGTATCGGCGGACTCGCAGTGGTAAATGCCATCGGCCTGAAAATGTGTGG
CCTGTTGAAATCGGGATTGACCCAATGACGGGTGATGGTAGAGATGGACG
CCGTCGCGAAAAACGAGAGGATCGAGAGGATCTTGGGAGTATGCACTATA
TTCAGTCCGTGCTGAGAGAATTGGCAGGTTGA
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