mRNA_H-elongata_contig7741.15418.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 305 bits (781), Expect = 1.370e-95 Identity = 159/199 (79.90%), Postives = 170/199 (85.43%), Query Frame = 1
Query: 34 MVHAIRSSARDPEKKDCVTTIRTVKTAIMEKVSRLIKGEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLE-EGDVCTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVET 627
MVHAIR SAR PEKKDCVTT+RTVK +MEKVSRLI+GE VCITSD WTSCAN+TYMSL TLIT AWKLVTLSVDCSK EGTTTGDALAAGI VAKHGLTGKVT VTTDC+PSMVKMGRLL + V T IGCCN++LEST+SIVFN P V+KVM LA GLVTRY TSSQAADRLKQFVKTY G +NKR IQDV T
Sbjct: 1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVVT 199
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 198 bits (503), Expect = 2.060e-57 Identity = 103/220 (46.82%), Postives = 143/220 (65.00%), Query Frame = 1
Query: 7 MLADKSFKEMVHAIRSSARDPEKKDCVTTIRTVKTAIMEKVSRLIKGEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLEEGDVCTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVETRWWSTCSMVARLL 666
M+ ++ F EMV ++S A P K+ + +R +K + ++V + GEHV +TSD WTS +N+TYM T I+ + LV L V+C K G TTG+ L + +A++GLT + TTDC+PSMVK GRLLEE + TH+GC H+LES TS F PGV K +ALA +VTRY+ SSQA+DRL+Q ++ E K+ +QDVETRWWST + + RLL
Sbjct: 1 MVENEHFIEMVRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQ-MRDIVQVERKKVVQDVETRWWSTYASICRLL 219
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 182 bits (462), Expect = 9.040e-51 Identity = 104/212 (49.06%), Postives = 135/212 (63.68%), Query Frame = 1
Query: 34 MVHAIRSSARDPEKKDCVTTIRTVKTAIMEKVSRLIKGEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLE-EGDVCTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVETRWWSTCSMVARLL 666
MV A+ A+ P +++ ++ +R VKTA+ +V+ ++ E V IT+D WTS N +YMSL V I WKL LS+DC+K GTTTG+ LAA + V +H LTG+V TDC+PSM+K GRLLE +G +HIGC NH++ESTTS VFN + + LA LV RY SSQ A RL Q E +QDVETRWWST +MV RLL
Sbjct: 1 MVSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGILQ-MEPLSVMQDVETRWWSTWAMVVRLL 210
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 174 bits (442), Expect = 1.250e-46 Identity = 89/174 (51.15%), Postives = 115/174 (66.09%), Query Frame = 1
Query: 145 GEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLEEGDVCTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVETRWWSTCSMVARLL 666
GEHV +TSD WT +N+TYMS T I+ + LV L ++C K T G+ L + +A++GLTG+ +TTDC+ SMVK GRLLEE + TH+GC H+LES TS F PGV K +ALA G+VTRY+ SSQA+DRL+Q V E K +QDVETRWWST + RL+
Sbjct: 3 GEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQ-VCDIVQVERKNVVQDVETRWWSTYVSICRLI 175
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 167 bits (424), Expect = 2.160e-45 Identity = 95/215 (44.19%), Postives = 131/215 (60.93%), Query Frame = 1
Query: 25 FKEMVHAIRSSARDPEKKDCVTTIRTVKTAIMEKVSRLIKGEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLEEGDV-CTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVETRWWSTCSMVARLL 666
F +V + AR P ++ V +R +K + +V+ ++ E+V IT+D WTS +N +YMSL V I W+L LS++C+K G+T G+ LA I + +HGLTG+VT TDC+PSMVK GRLLE G HIGC NH++ESTTS VFN + +A A +V RY SSQ + RL F+ +QDVETRWWS+ +M+ RLL
Sbjct: 34 FHAVVSGLNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGILK-LSPLSVLQDVETRWWSSWAMIERLL 246
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 146 bits (369), Expect = 1.480e-38 Identity = 74/154 (48.05%), Postives = 100/154 (64.94%), Query Frame = 1
Query: 181 SCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLEEGDVCTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVETRWWST 642
S +N+TYM+ T I+ + LV L ++ K G TTG+ L + +A++GLTG+ TTDC+P MVK GRLLEE + +H+GC H+ ES TS F PGV K +AL G+VTRY+ SSQA++RL+Q E K+ +QDVETRWWST
Sbjct: 3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQ-VERKKVVQDVETRWWST 155
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: UPI0018C29829 (zinc finger BED domain-containing protein 4 n=1 Tax=Bombyx mori TaxID=7091 RepID=UPI0018C29829) HSP 1 Score: 80.5 bits (197), Expect = 6.730e-14 Identity = 64/224 (28.57%), Postives = 109/224 (48.66%), Query Frame = 1
Query: 7 MLADKSFKEMVHAIRSSARDPEKKDCVTTIRTVKTAIMEKV-SRLIKGEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLEEGDVCTHIGCCNHQLESTT-SIVFNDPGVEKVMALAHGLVTRYSTSSQAADRL-KQFVKTYPGFENKRAIQDVETRWWSTCSMVARLLE 669
++ ++SFK+ V I K I T+ E + + L++ E++C+T+D+WTS AN +Y+++ IT ++L T +DCS + + T D + + V V + LT K+ V TD + + R + H GC H L + + ND ++ ++ +V + +SS A ++L K P KR IQ+V T W ST MV R ++
Sbjct: 152 LVEERSFKKFVRWIPGYQLPTRKTISNVMIPTLFNKTKETLKTELLQIENICLTADLWTSRANESYLAVTGHFITDDYELKTCLLDCSNFQESHTNDNIQTVLIVMVKEWNLTNKINFVITD---NAANIQRAISNIG-WKHYGCYGHTLNLIVQNAISNDETLQNLLEKVKKIVRFFKSSSTALEQLLKAQTNDQPNCIPKRLIQEVPTCWNSTFQMVRRFVD 371
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: A0A8C6P4W3_NOTFU (BED-type domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6P4W3_NOTFU) HSP 1 Score: 79.0 bits (193), Expect = 2.050e-13 Identity = 61/220 (27.73%), Postives = 99/220 (45.00%), Query Frame = 1
Query: 25 FKEMVHAIRSSARDPEKKDCVTTIRT-----VKTAIMEKVSRLIKGEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLEEGDVCTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVETRWWSTCSMVARLLE 669
F++++H + + P + T VK+ + EK L K E V IT+D WTSCA +Y+++ I W+L + +G+ TG + A + A + K + TD +MV G E ++ H+ C H + T F V +++ +V + S +AA+ L+ K + IQDV TRW ST M+ R+LE
Sbjct: 148 FQDLIHTLEPRYKIPSRNHITNTCMPALYAQVKSQVEEK---LAKAERVAITTDAWTSCATESYVTITAQHIAPDWELHVYVLQTRAFKGSHTGKNVGALLKQACVDWKILDKEPALVTDNATNMVLAG---VEAEMTPHLMCFAHTINLATQKAFKMDTVARLLGKVRRVVGFFHRSVRAAEILQDKQKQL-ALPTHKLIQDVSTRWNSTQIMLERVLE 360
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: A0A1A8USA6_NOTFU (BED-type domain-containing protein n=8 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8USA6_NOTFU) HSP 1 Score: 79.0 bits (193), Expect = 2.290e-13 Identity = 61/220 (27.73%), Postives = 99/220 (45.00%), Query Frame = 1
Query: 25 FKEMVHAIRSSARDPEKKDCVTTIRT-----VKTAIMEKVSRLIKGEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLEEGDVCTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVETRWWSTCSMVARLLE 669
F++++H + + P + T VK+ + EK L K E V IT+D WTSCA +Y+++ I W+L + +G+ TG + A + A + K + TD +MV G E ++ H+ C H + T F V +++ +V + S +AA+ L+ K + IQDV TRW ST M+ R+LE
Sbjct: 148 FQDLIHTLEPRYKIPSRNHITNTCMPALYAQVKSQVEEK---LAKAERVAITTDAWTSCATESYVTITAQHIAPDWELHVYVLQTRAFKGSHTGKNVGALLKQACVDWKILDKEPALVTDNATNMVLAG---VEAEMTPHLMCFAHTINLATQKAFKMDTVARLLGKVRRVVGFFHRSVRAAEILQDKQKQL-ALPTHKLIQDVSTRWNSTQIMLERVLE 360
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Match: UPI0018979202 (E3 SUMO-protein ligase ZBED1-like n=5 Tax=Nematolebias whitei TaxID=451745 RepID=UPI0018979202) HSP 1 Score: 77.0 bits (188), Expect = 9.690e-13 Identity = 58/217 (26.73%), Postives = 99/217 (45.62%), Query Frame = 1
Query: 25 FKEMVHAIRSSARDPEKKDCVTTIRTVKTA-IMEKVSR-LIKGEHVCITSDVWTSCANNTYMSLMVTLITGAWKLVTLSVDCSKPEGTTTGDALAAGINVAVAKHGLTGKVTVVTTDCDPSMVKMGRLLEEGDVCTHIGCCNHQLESTTSIVFNDPGVEKVMALAHGLVTRYSTSSQAADRLKQFVKTYPGFENKRAIQDVETRWWSTCSMVARLLE 669
F++++H + + P ++ T A + +V + L E V IT+D WTSC+ +Y+++ V I+ WKL + +G+ TG + A + A L K + TD +MV G E ++ H+ C H + T F V +++ V + S +AA+ L++ K + + IQDV TRW S+ M+ R E
Sbjct: 139 FQDLIHTLEPRYKIPSRQHITNTCMPALYAQVKSQVEKELAHAERVAITTDAWTSCSTESYVTITVHYISPDWKLNVHVLQTRAFKGSHTGKNIGALLKQACVDWNLLDKDPALVTDNATNMVLAG---VEAEMTPHLMCFAHTINLATQKAFKVDTVARLLGRVRKAVAFFHRSVRAAEILQEKQKQL-ALPSHKLIQDVSTRWNSSHDMLERFFE 351 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7741.15418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7741.15418.1 >prot_H-elongata_contig7741.15418.1 ID=prot_H-elongata_contig7741.15418.1|Name=mRNA_H-elongata_contig7741.15418.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=221bp MLADKSFKEMVHAIRSSARDPEKKDCVTTIRTVKTAIMEKVSRLIKGEHVback to top mRNA from alignment at H-elongata_contig7741:2475..3143- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7741.15418.1 ID=mRNA_H-elongata_contig7741.15418.1|Name=mRNA_H-elongata_contig7741.15418.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=669bp|location=Sequence derived from alignment at H-elongata_contig7741:2475..3143- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7741:2475..3143- >mRNA_H-elongata_contig7741.15418.1 ID=mRNA_H-elongata_contig7741.15418.1|Name=mRNA_H-elongata_contig7741.15418.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1326bp|location=Sequence derived from alignment at H-elongata_contig7741:2475..3143- (Himanthalia elongata Himel1 dioecious)back to top |