mRNA_H-elongata_contig77391.15415.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig77391.15415.1 vs. uniprot
Match: D7G992_ECTSI (Trehalose-6-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G992_ECTSI) HSP 1 Score: 134 bits (338), Expect = 6.500e-35 Identity = 113/162 (69.75%), Postives = 118/162 (72.84%), Query Frame = 1
Query: 1 VFELQPDIAWDKGKAVLWLLDNLVAPTAV-------NSLSLSQYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRENKFFTVFIGDDKTDENAFRVLKSGPDSSGITHEGLGILVSEESRETNAAYTLRNPDEVASFLEKIVVFGKEHC 465
VFELQPDIAWDKGKAVLWLLD LV P A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +FFT+FIGDDKTDENAFRVL H+G+GILVSEESRETNAAYTLRNPDEVASFLEKI + G E C
Sbjct: 224 VFELQPDIAWDKGKAVLWLLDKLVMPMAQAPEEPAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDYDDEYSGRFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAMLGSERC 385
BLAST of mRNA_H-elongata_contig77391.15415.1 vs. uniprot
Match: A0A6H5KE57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE57_9PHAE) HSP 1 Score: 110 bits (276), Expect = 2.170e-28 Identity = 53/72 (73.61%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 250 KFFTVFIGDDKTDENAFRVLKSGPDSSGITHEGLGILVSEESRETNAAYTLRNPDEVASFLEKIVVFGKEHC 465
+FFT+FIGDDKTDENAFRVL H+G+GILVSEESRETNAAYTLRNPDEVASFLEKI G E C
Sbjct: 48 RFFTIFIGDDKTDENAFRVLNGDMGEDRARHDGVGILVSEESRETNAAYTLRNPDEVASFLEKIAKLGSERC 119
BLAST of mRNA_H-elongata_contig77391.15415.1 vs. uniprot
Match: A0A836CP52_9STRA (Trehalose-phosphatase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP52_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 3.960e-21 Identity = 74/154 (48.05%), Postives = 93/154 (60.39%), Query Frame = 1
Query: 1 VFELQPDIAWDKGKAVLWLLD--NLVAPTAVNSLSLSQYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRENKFFTVFIGDDKTDENAFRVLKSGPDSSGITHEGLGILVSEESRETNAAYTLRNPDEVASFLEKIVVFGK 456
VFELQPD+ W+KG AV+W+LD L + ++ S XXXXXXXXXXXXXXXX + FT+FIGDD+TDE+AFRV + + GLGILVSEESR+T+AAYTLRNPDEVA L+++V G+
Sbjct: 295 VFELQPDVQWNKGSAVVWMLDMLGLSRHSKADATSFQIAEREDAQAGXXXXXXXXXXXXXXXXLEEPEEASLVDSDGDEDAPPHGEVFTIFIGDDRTDEDAFRVFSAAGNCKKGQQPGLGILVSEESRDTHAAYTLRNPDEVAELLQRLVQVGE 448
BLAST of mRNA_H-elongata_contig77391.15415.1 vs. uniprot
Match: A0A2V5XZF1_9BACT (Trehalose 6-phosphate phosphatase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5XZF1_9BACT) HSP 1 Score: 79.3 bits (194), Expect = 6.860e-15 Identity = 55/152 (36.18%), Postives = 68/152 (44.74%), Query Frame = 1
Query: 1 VFELQPDIAWDKGKAVLWLLDNLVAPTAVNSLSLSQYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRENKFFTVFIGDDKTDENAFRVLKSGPDSSGITHEGLGILVSEESRETNAAYTLRNPDEVASFLEKIVVFGK 456
V+EL PDI WDKGKAVLWLL NL L L+ K ++IGDD+TDE+AFR LK G+GILVSE+SR T A Y+L+NP EV SFL +++ K
Sbjct: 169 VYELLPDIDWDKGKAVLWLLQNL-------GLDLA------------------------------------------------KVCPIYIGDDRTDEDAFRALKQ---------YGIGILVSEQSRPTGAIYSLKNPMEVDSFLRELIEMTK 256
BLAST of mRNA_H-elongata_contig77391.15415.1 vs. uniprot
Match: A0A835ZEL8_9STRA (Trehalose-phosphatase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL8_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 9.130e-15 Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 256 FTVFIGDDKTDENAFRVLKSGPDSSGITHEGLGILVSEESRETNAAYTLRNPDEVASFLEKIVVFGKEHCCGP 474
FT+FIGDDK DE+AF+V +SS GLGILVSEESR T+AAYTL+NP EVA L ++V G+ P
Sbjct: 416 FTIFIGDDKADEDAFQVFTG--ESSSAQQPGLGILVSEESRATHAAYTLKNPQEVAELLSRLVSIGQSRSLQP 486
BLAST of mRNA_H-elongata_contig77391.15415.1 vs. uniprot
Match: A0A7R9YED3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YED3_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.410e-13 Identity = 48/163 (29.45%), Postives = 70/163 (42.94%), Query Frame = 1
Query: 1 VFELQPDIAWDKGKAVLWLLDNLVAPTAVNSLSLSQYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRENKFFTVFIGDDKTDENAFRVLKSGPDSS----------------GITHEGLGILVSEESRETNAAYTLRNPDEVASFLEKI 441
V+EL+PDI WDKG+AVLW+L NL L+Q ++ FT++IGDD TDE+AF V D + G+GI+V+E++R+T A +TLR+P +V FLE++
Sbjct: 49 VWELRPDIQWDKGQAVLWVLRNLEDFRRRQHAMLAQ------------------------EESNSDSDQSTKTDSSDYSEKQTSLFTIYIGDDTTDEDAFAVFSDQDDEECEGSYLAPSRGAGSARDLDFSGMGIVVTEDARDTKAQFTLRDPSQVTEFLERL 187
BLAST of mRNA_H-elongata_contig77391.15415.1 vs. uniprot
Match: A0A2V6G7J0_9BACT (Trehalose 6-phosphate phosphatase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V6G7J0_9BACT) HSP 1 Score: 72.8 bits (177), Expect = 8.560e-13 Identity = 48/147 (32.65%), Postives = 63/147 (42.86%), Query Frame = 1
Query: 1 VFELQPDIAWDKGKAVLWLLDNLVAPTAVNSLSLSQYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRENKFFTVFIGDDKTDENAFRVLKSGPDSSGITHEGLGILVSEESRETNAAYTLRNPDEVASFLEKI 441
V+EL PDI W+KGKAVLWLL+ L ++IGDD+TDE+AFR L+ G+GILVS+ ++ET+A YTLRNP+EV FL+ I
Sbjct: 114 VYELLPDIDWNKGKAVLWLLETL-------------------------------------------------------GLEGRNVLPIYIGDDRTDEDAFRALEK---------PGVGILVSDRAQETSANYTLRNPEEVERFLQNI 196
BLAST of mRNA_H-elongata_contig77391.15415.1 vs. uniprot
Match: A0A2V6KP73_9BACT (Trehalose 6-phosphate phosphatase n=2 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V6KP73_9BACT) HSP 1 Score: 73.6 bits (179), Expect = 9.610e-13 Identity = 50/147 (34.01%), Postives = 62/147 (42.18%), Query Frame = 1
Query: 1 VFELQPDIAWDKGKAVLWLLDNLVAPTAVNSLSLSQYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRENKFFTVFIGDDKTDENAFRVLKSGPDSSGITHEGLGILVSEESRETNAAYTLRNPDEVASFLEKI 441
V+EL PDI WDKGKAVLWLL+NL K ++IGDD+TDE+AFR L+ G GILVSEE R T A+Y+LR+P EV FL ++
Sbjct: 170 VYELLPDINWDKGKAVLWLLENL-------------------------------------------------------GLERPKVRPIYIGDDRTDEDAFRALEQ---------RGAGILVSEEPRATAASYSLRDPSEVERFLREL 252
BLAST of mRNA_H-elongata_contig77391.15415.1 vs. uniprot
Match: W7TFM0_9STRA (Trehalose 6-phosphate phosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFM0_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.030e-12 Identity = 48/148 (32.43%), Postives = 65/148 (43.92%), Query Frame = 1
Query: 1 VFELQPDIAWDKGKAVLWLLDNLVAPTAVNSLSLSQYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRENKFFTVFIGDDKTDENAFRVLKSGPDSSGITHEGLGILVSEESRETNAAYTLRNPDEVASFLEKIV 444
VFEL+PDI WDKGKA++WLL L E F ++IGDD TDE+AFR+ + EG+GI+V+ E++ T A Y+LRNP+EVA FL ++V
Sbjct: 247 VFELRPDITWDKGKAMVWLLQAL------------------------------------------------------GLWEEEDVFAIYIGDDTTDEDAFRIFHHEDRA-----EGIGIVVTAENKLTGAKYSLRNPEEVAVFLARLV 335
BLAST of mRNA_H-elongata_contig77391.15415.1 vs. uniprot
Match: A0A7G2ECB3_ARATH (Trehalose 6-phosphate phosphatase n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A7G2ECB3_ARATH) HSP 1 Score: 72.4 bits (176), Expect = 1.790e-12 Identity = 33/70 (47.14%), Postives = 51/70 (72.86%), Query Frame = 1
Query: 256 FTVFIGDDKTDENAFRVLKSGPDSSGITHEGLGILVSEESRETNAAYTLRNPDEVASFLEKIVVFGKEHC 465
F ++IGDD+TDE+AF++L+ +GLGILVS+ ++ETNA+Y+L+ PDEV FLE++V + + C
Sbjct: 166 FPIYIGDDRTDEDAFKILRD-------KKQGLGILVSKYAKETNASYSLQEPDEVMVFLERLVEWKQSRC 228 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77391.15415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig77391.15415.1 >prot_H-elongata_contig77391.15415.1 ID=prot_H-elongata_contig77391.15415.1|Name=mRNA_H-elongata_contig77391.15415.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp VFELQPDIAWDKGKAVLWLLDNLVAPTAVNSLSLSQYGGGGGGIPSKYPAback to top mRNA from alignment at H-elongata_contig77391:91..1259+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig77391.15415.1 ID=mRNA_H-elongata_contig77391.15415.1|Name=mRNA_H-elongata_contig77391.15415.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1169bp|location=Sequence derived from alignment at H-elongata_contig77391:91..1259+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig77391:91..1259+ >mRNA_H-elongata_contig77391.15415.1 ID=mRNA_H-elongata_contig77391.15415.1|Name=mRNA_H-elongata_contig77391.15415.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig77391:91..1259+ (Himanthalia elongata Himel1 dioecious)back to top |