mRNA_H-elongata_contig77389.15414.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77389.15414.1
Unique NamemRNA_H-elongata_contig77389.15414.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77389.15414.1 vs. uniprot
Match: A0A388K4Z0_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K4Z0_CHABU)

HSP 1 Score: 53.9 bits (128), Expect = 1.150e-6
Identity = 21/60 (35.00%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   37 ITGMKCGAHALDLLMKDIAKMPWCAGIIKRNLTVVKWVENHHATGAVGSTRQDRVPTHQP 216
            I  + C AH   LL++DI+K+ W  G +KR  T++K++ NHH+T ++  +  D +   +P
Sbjct:  405 IPWVPCAAHCCSLLLRDISKLDWVTGTVKRGHTIIKFIRNHHSTHSLMMSMDDSLALLRP 464
[Close]
BLAST of mRNA_H-elongata_contig77389.15414.1 vs. uniprot
Match: A0A388JVU7_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JVU7_CHABU)

HSP 1 Score: 53.5 bits (127), Expect = 1.560e-6
Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:   31 SGITGMKCGAHALDLLMKDIAKMPWCAGIIKRNLTVVKWVENHHAT 168
            S I  + C AH   LL++DI K+ W  G+IKR+ T+VK++ NHH T
Sbjct:  176 SRIPWVPCAAHCCSLLLRDIRKLDWIKGMIKRSHTIVKFIRNHHCT 221
[Close]
BLAST of mRNA_H-elongata_contig77389.15414.1 vs. uniprot
Match: A0A388KWZ5_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KWZ5_CHABU)

HSP 1 Score: 53.1 bits (126), Expect = 2.140e-6
Identity = 26/63 (41.27%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:   31 SGITGMKCGAHALDLLMKDIAKMPWCAGIIKRNLTVVKWVENHHATGA----VGSTRQDRVPT 207
            S I  + C AH   LL++DI K+ W  G +KR  T+VK++ NHH T +    +GST     PT
Sbjct:  370 SRIPWVPCAAHCCSLLLRDINKLDWVKGTVKRGHTIVKFIRNHHTTNSFMMSLGSTLTLLQPT 432
[Close]
BLAST of mRNA_H-elongata_contig77389.15414.1 vs. uniprot
Match: A0A388L4K1_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L4K1_CHABU)

HSP 1 Score: 52.8 bits (125), Expect = 2.940e-6
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   31 SGITGMKCGAHALDLLMKDIAKMPWCAGIIKRNLTVVKWVENHHATGA 174
            S I  + C AH   LL++DI+K+ W  G +KR  T+VK++ NHH T +
Sbjct:  453 SRIPWVPCAAHCSSLLLRDISKLEWVKGTVKRGHTIVKFIRNHHTTNS 500
[Close]
BLAST of mRNA_H-elongata_contig77389.15414.1 vs. uniprot
Match: A0A388LZB2_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LZB2_CHABU)

HSP 1 Score: 52.4 bits (124), Expect = 3.950e-6
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   37 ITGMKCGAHALDLLMKDIAKMPWCAGIIKRNLTVVKWVENHHATGA 174
            I  + C AH   LL++DI+K+ W  G +KR  T+VK++ NHH T +
Sbjct:  401 IPWVPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNS 446
[Close]
BLAST of mRNA_H-elongata_contig77389.15414.1 vs. uniprot
Match: A0A388L5J5_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L5J5_CHABU)

HSP 1 Score: 52.4 bits (124), Expect = 3.990e-6
Identity = 21/57 (36.84%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:   31 SGITGMKCGAHALDLLMKDIAKMPWCAGIIKRNLTVVKWVENHHATGAVGSTRQDRV 201
            S I  + C  H   LL++DI+K+ W  G +KR+ T+VK++ NHH T ++  +  D +
Sbjct:  252 SRIPWVPCAVHCCSLLLRDISKLDWMKGTVKRSHTIVKFIRNHHCTHSLMMSLDDSL 308
[Close]
BLAST of mRNA_H-elongata_contig77389.15414.1 vs. uniprot
Match: A0A388L9Q9_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L9Q9_CHABU)

HSP 1 Score: 52.4 bits (124), Expect = 3.990e-6
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   37 ITGMKCGAHALDLLMKDIAKMPWCAGIIKRNLTVVKWVENHHATGA 174
            I  + C AH   LL++DI+K+ W  G +KR  T+VK++ NHH T +
Sbjct:  320 IPWVPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNS 365
[Close]
BLAST of mRNA_H-elongata_contig77389.15414.1 vs. uniprot
Match: A0A388LAH1_CHABU (RNA-directed DNA polymerase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LAH1_CHABU)

HSP 1 Score: 52.4 bits (124), Expect = 4.050e-6
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   37 ITGMKCGAHALDLLMKDIAKMPWCAGIIKRNLTVVKWVENHHATGA 174
            I  + C AH   LL++DI+K+ W  G +KR  T+VK++ NHH T +
Sbjct:  108 IPWVPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTTNS 153
[Close]
BLAST of mRNA_H-elongata_contig77389.15414.1 vs. uniprot
Match: A0A388JRM0_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JRM0_CHABU)

HSP 1 Score: 52.0 bits (123), Expect = 5.450e-6
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:   37 ITGMKCGAHALDLLMKDIAKMPWCAGIIKRNLTVVKWVENHHAT 168
            I  + C AH   LL++DI+K+ W  G +KR  T+VK++ NHH T
Sbjct:  353 IPWVPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHTT 396
[Close]
BLAST of mRNA_H-elongata_contig77389.15414.1 vs. uniprot
Match: A0A388L3T3_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L3T3_CHABU)

HSP 1 Score: 52.0 bits (123), Expect = 5.500e-6
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   37 ITGMKCGAHALDLLMKDIAKMPWCAGIIKRNLTVVKWVENHHATGA 174
            I  + C AH   LL++DI+K+ W  G +KR  T+VK++ NHH T +
Sbjct: 1328 IPWVPCAAHCCSLLLRDISKLDWVKGTVKRGHTIVKFIRNHHMTNS 1373
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77389.15414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A388K4Z0_CHABU1.150e-635.00Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388JVU7_CHABU1.560e-647.83DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388KWZ5_CHABU2.140e-641.27Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388L4K1_CHABU2.940e-643.75Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388LZB2_CHABU3.950e-643.48DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388L5J5_CHABU3.990e-636.84Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388L9Q9_CHABU3.990e-643.48DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388LAH1_CHABU4.050e-643.48RNA-directed DNA polymerase n=1 Tax=Chara braunii ... [more]
A0A388JRM0_CHABU5.450e-645.45DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A388L3T3_CHABU5.500e-643.48DUF659 domain-containing protein n=1 Tax=Chara bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77389contigH-elongata_contig77389:2426..2641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.4072564-CDS-H-elongata_contig77389:2425..26411622931179.4072564-CDS-H-elongata_contig77389:2425..2641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77389 2426..2641 -
1691679730.8195293-CDS-H-elongata_contig77389:2425..26411691679730.8195293-CDS-H-elongata_contig77389:2425..2641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77389 2426..2641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77389.15414.1prot_H-elongata_contig77389.15414.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77389 2426..2641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77389.15414.1

>prot_H-elongata_contig77389.15414.1 ID=prot_H-elongata_contig77389.15414.1|Name=mRNA_H-elongata_contig77389.15414.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
ILHTTCTVNTSGITGMKCGAHALDLLMKDIAKMPWCAGIIKRNLTVVKWV
ENHHATGAVGSTRQDRVPTHQP
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mRNA from alignment at H-elongata_contig77389:2426..2641-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77389.15414.1 ID=mRNA_H-elongata_contig77389.15414.1|Name=mRNA_H-elongata_contig77389.15414.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig77389:2426..2641- (Himanthalia elongata Himel1 dioecious)
ATATTGCATACCACTTGCACCGTGAACACGTCCGGCATTACAGGCATGAA
GTGTGGTGCGCATGCATTAGACCTGCTCATGAAGGACATCGCCAAGATGC
CGTGGTGTGCCGGCATCATCAAGCGCAACCTCACAGTTGTGAAGTGGGTC
GAGAACCATCACGCCACGGGCGCGGTTGGTTCTACTCGACAAGACCGAGT
ACCGACTCATCAACCC
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Coding sequence (CDS) from alignment at H-elongata_contig77389:2426..2641-

>mRNA_H-elongata_contig77389.15414.1 ID=mRNA_H-elongata_contig77389.15414.1|Name=mRNA_H-elongata_contig77389.15414.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig77389:2426..2641- (Himanthalia elongata Himel1 dioecious)
ATATTGCATACCACTTGCACCGTGAACACGTCCGGCATTACAGGCATGAA
GTGTGGTGCGCATGCATTAGACCTGCTCATGAAGGACATCGCCAAGATGC
CGTGGTGTGCCGGCATCATCAAGCGCAACCTCACAGTTGTGAAGTGGGTC
GAGAACCATCACGCCACGGGCGCGGTTGGTTCTACTCGACAAGACCGAGT
ACCGACTCATCAACCCATATTGCATACCACTTGCACCGTGAACACGTCCG
GCATTACAGGCATGAAGTGTGGTGCGCATGCATTAGACCTGCTCATGAAG
GACATCGCCAAGATGCCGTGGTGTGCCGGCATCATCAAGCGCAACCTCAC
AGTTGTGAAGTGGGTCGAGAACCATCACGCCACGGGCGCGGTTGGTTCTA
CTCGACAAGACCGAGTACCGACTCATCAACCC
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