mRNA_H-elongata_contig77377.15413.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77377.15413.1
Unique NamemRNA_H-elongata_contig77377.15413.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77377.15413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77377contigH-elongata_contig77377:2062..2445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size384
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.3309946-CDS-H-elongata_contig77377:2061..24451622931179.3309946-CDS-H-elongata_contig77377:2061..2445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77377 2062..2445 +
1691679730.8091602-CDS-H-elongata_contig77377:2061..24451691679730.8091602-CDS-H-elongata_contig77377:2061..2445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77377 2062..2445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77377.15413.1prot_H-elongata_contig77377.15413.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77377 2062..2445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77377.15413.1

>prot_H-elongata_contig77377.15413.1 ID=prot_H-elongata_contig77377.15413.1|Name=mRNA_H-elongata_contig77377.15413.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
MVETQAGGKTLFGWENDRARLQSALTESISRVAVGCCARRLDVEIFSLAP
RKTTRARSRCTRSGSVNKCQRKRTAIGRCTTLTRFISADKGTGLCALRRY
KEKHGLALASAATATGHDVICARFLKSS
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mRNA from alignment at H-elongata_contig77377:2062..2445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77377.15413.1 ID=mRNA_H-elongata_contig77377.15413.1|Name=mRNA_H-elongata_contig77377.15413.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=384bp|location=Sequence derived from alignment at H-elongata_contig77377:2062..2445+ (Himanthalia elongata Himel1 dioecious)
ATGGTTGAAACACAAGCGGGAGGGAAGACTCTGTTCGGTTGGGAAAATGA
TCGCGCGAGGCTGCAGAGCGCGCTCACTGAGTCCATATCGCGTGTCGCTG
TTGGATGCTGTGCGCGCCGTCTTGATGTGGAAATATTTTCTCTCGCGCCA
AGAAAGACCACCCGAGCCCGTTCACGATGCACGCGCTCAGGTTCCGTAAA
TAAGTGCCAACGGAAACGAACTGCCATAGGACGATGCACGACTCTCACAC
GCTTCATCTCGGCAGATAAAGGAACTGGGCTGTGTGCGCTAAGGCGATAT
AAGGAAAAACACGGGCTTGCTCTTGCGTCAGCGGCGACCGCGACGGGTCA
TGACGTGATATGCGCGCGATTTCTAAAGTCTTCC
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Coding sequence (CDS) from alignment at H-elongata_contig77377:2062..2445+

>mRNA_H-elongata_contig77377.15413.1 ID=mRNA_H-elongata_contig77377.15413.1|Name=mRNA_H-elongata_contig77377.15413.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig77377:2062..2445+ (Himanthalia elongata Himel1 dioecious)
ATGGTTGAAACACAAGCGGGAGGGAAGACTCTGTTCGGTTGGGAAAATGA
TCGCGCGAGGCTGCAGAGCGCGCTCACTGAGTCCATATCGCGTGTCGCTG
TTGGATGCTGTGCGCGCCGTCTTGATGTGGAAATATTTTCTCTCGCGCCA
AGAAAGACCACCCGAGCCCGTTCACGATGCACGCGCTCAGGTTCCGTAAA
TAAGTGCCAACGGAAACGAACTGCCATAGGACGATGCACGACTCTCACAC
GCTTCATCTCGGCAGATAAAGGAACTGGGCTGTGTGCGCTAAGGCGATAT
AAGGAAAAACACGGGCTTGCTCTTGCGTCAGCGGCGACCGCGACGGGTCA
TGACGTGATATGCGCGCGATTTCTAAAGTCTTCCATGGTTGAAACACAAG
CGGGAGGGAAGACTCTGTTCGGTTGGGAAAATGATCGCGCGAGGCTGCAG
AGCGCGCTCACTGAGTCCATATCGCGTGTCGCTGTTGGATGCTGTGCGCG
CCGTCTTGATGTGGAAATATTTTCTCTCGCGCCAAGAAAGACCACCCGAG
CCCGTTCACGATGCACGCGCTCAGGTTCCGTAAATAAGTGCCAACGGAAA
CGAACTGCCATAGGACGATGCACGACTCTCACACGCTTCATCTCGGCAGA
TAAAGGAACTGGGCTGTGTGCGCTAAGGCGATATAAGGAAAAACACGGGC
TTGCTCTTGCGTCAGCGGCGACCGCGACGGGTCATGACGTGATATGCGCG
CGATTTCTAAAGTCTTCC
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