mRNA_H-elongata_contig77322.15408.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI) HSP 1 Score: 319 bits (818), Expect = 5.790e-94 Identity = 178/321 (55.45%), Postives = 204/321 (63.55%), Query Frame = 1
Query: 34 AITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDL------------------------------------------------------------PPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPRIGGTKNESENCSASLDTSKVKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKNIPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSYVQR 816
A+TP+ IVDGDR ATL LLWF+I RYSL+ALLDR+ALAREAEGVVSAA KWRR+ S ARP+ PPL +PDVAA+ E W LLSALL WCQAVCH YGV V NFTTSFADGRALCLL+H+YHP I+PL AIR+TTAHLPRIGG + E E+ SASLD SK+ + +CKAAL+GERANVALAR V +LGGVPSMLAPFDS N PEEKTIITV+AHL RLLESSAEIRS I++QR YRS+++R
Sbjct: 623 AVTPKEIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAEGVVSAARKWRRAGFSPARPEXXXXXXXXXXXXXXXXXXXXXXXXXXVGEATVVDFGVMSPGSXXXXXAPPAGGRAVAGEEHPPLELPDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHPRIIPLNAIRRTTAHLPRIGGGRGELEDWSASLDASKITEAECKAALDGERANVALARHCVAELGGVPSMLAPFDSTNRPEEKTIITVVAHLCARLLESSAEIRSTILVQRVYRSFLER 943
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: A0A6H5KRH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH5_9PHAE) HSP 1 Score: 316 bits (809), Expect = 9.160e-93 Identity = 175/310 (56.45%), Postives = 205/310 (66.13%), Query Frame = 1
Query: 34 AITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDL------------------------------------PPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPRIGGTKNESENCSASLDTSK-------------VKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKNIPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSYVQR 816
A++P++IVDGDR ATL LLWF+I RYSL+ALLDR+ALAREA+GV+SAA KWRR+ S ARP+ PPL +PDVAA+ E W LLSALL WCQAVCH YGV V NFTTSFADGRALCLL+H+YHP I+PL AIR+TTAHLPRIGG + E E+ SASLD SK + + +CKAAL+GERANVALAR V +LGGVPSMLAPFDS N PEEKTIITV+AHL RLLESSAEIRS I++QR YRS+++R
Sbjct: 503 AVSPKDIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAQGVISAARKWRRAGFSPARPERAMGKMDAIDFGVMSPGSPASPVAPPAEGRAVAGDEHPPLELPDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHPRIIPLNAIRRTTAHLPRIGGGRGELEDWSASLDPSKEVSCCAAEVDQGCITEAECKAALDGERANVALARHCVAELGGVPSMLAPFDSTNRPEEKTIITVVAHLCARLLESSAEIRSTILVQRVYRSFLER 812
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: A0A835Z978_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z978_9STRA) HSP 1 Score: 189 bits (480), Expect = 5.230e-49 Identity = 121/285 (42.46%), Postives = 160/285 (56.14%), Query Frame = 1
Query: 1 DGAICATTTATAITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDL---PPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPR-----------IGGTKNESENCSASLDTSKVKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKNIPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSYVQ 813
DGA+ T ++IVDG + T+ LLW VI+RY L++L+D +AL RE VV + +R L P L P L +P A+ G SG H +L AL W QAVCH YGV + NFTTSFADGRALCLLVH YHP +LPL I KTT L + + +L+ S+V + CKAAL+ ER NVAL + V+ LGGVP ML FDS + P+E+TI+ +A+L +RLL SSAEIR+ +QR YR++++
Sbjct: 677 DGALPLGTHEIGEAAKDIVDGHQGRTIGLLWAVISRYKLSSLVDVQALTREITAVV----RVQRKRQQLGLPTLHDGPRLCLPSAEAI------GLSG--------------HGDLQQALAVWAQAVCHGYGVPIHNFTTSFADGRALCLLVHHYHPCLLPLWRIVKTTNSLQHRATADDAPTEVLSPGSGNNNTWMLALEASQVTERDCKAALQRERQNVALFSKCVKALGGVPLMLPIFDSTDCPDERTIVAAIAYLASRLLASSAEIRATQTIQRTYRAHLK 937
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: A0A7S3UNU8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNU8_HETAK) HSP 1 Score: 169 bits (429), Expect = 1.930e-46 Identity = 112/269 (41.64%), Postives = 151/269 (56.13%), Query Frame = 1
Query: 58 DGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDLPPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPR-IGGTKNESENCSASLDTSK------------VKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKNI--PEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSYVQRK 819
DG+R+ TL LLW +I RY + AL+D L +E +GV ++ RR++ A L + L E E S D E LL W QA+C YGV V NF++SFADGRA CLLVH+YHP ++PL+ I KTTAHLPR GG +A L +++ V + K AL GERAN ALA + V+ LGGVP++L P D+ ++ PEEKT + LA+L RL++SSAEIR+ LQR +R + R+
Sbjct: 1 DGNREKTLLLLWLIIFRYKVCALVDLALLRQEIQGVRASPMWRRRAEFGRALAMKEGLAVGCEEPLVELDAPNEQDGDSSGDLSE--------FTGLLLQWAQAICLPYGVPVCNFSSSFADGRAFCLLVHYYHPRMIPLRQISKTTAHLPREYGGXXXXXXXSAADLLSAEEDLVSEAVLRPGVTEDMVKKALRGERANSALAAEQVRFLGGVPALL-PRDTDSLCPPEEKTTVVFLAYLCARLMDSSAEIRACRALQRAWRGRLARR 260
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: A0A7S1Z0Q5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z0Q5_9STRA) HSP 1 Score: 166 bits (420), Expect = 1.040e-42 Identity = 105/257 (40.86%), Postives = 140/257 (54.47%), Query Frame = 1
Query: 37 ITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDLPPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPRIGGTKNESENCSASLDTSKVKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKNIPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSY 807
I+ ++VDG R L LLW +IA Y L A+LD L E V A K R + L D + + H DS L+ LL WCQAVC +G V NFTTSFADG+ALCLL+H+YHP IL + I TT LP T+N+ E+ ++ + Q + AL+ ER N A+A + + LGGVP MLA DS NIPEEK++I +A+L +RL+ESS EI + +++QR YR Y
Sbjct: 121 ISAHHVVDGHRPKVLKLLWSIIAHYQLRAVLDVTLLENEIRDVHRANRKRREYVAAF----LTRTSNVDEMSSENA--------HECEDSDN--------LVKLLLKWCQAVCSCFGYFVENFTTSFADGKALCLLMHYYHPGILRKEEILPTTRDLPNFFSTENQREHEKEAV-AHNIFDEQYENALQNERRNSAMANKRMSDLGGVPGMLAVTDSANIPEEKSMILCVAYLCSRLMESSKEIFATMVIQRCYRRY 356
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: A0A7S2KPU1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KPU1_9STRA) HSP 1 Score: 168 bits (426), Expect = 6.470e-42 Identity = 95/259 (36.68%), Postives = 148/259 (57.14%), Query Frame = 1
Query: 37 ITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDLPPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPRIGGTKNES--ENCSASLDTSKVKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKNIPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSY 807
++P+++VDG + L LLW IA + L+ L++ +AL RE V + + + LA D + A R+S N+ +V LL WCQ +C +G+A+ NF+TSFADG+ALC L+H+YHP ILP +A+R T+ LPR G +++ E S+ V Q K + ER N +LA + + +LGG+P ML FD++N PEEK++I +A+L +RL+ESS EI + +++Q +YR +
Sbjct: 838 VSPKHVVDGHQSKVLKLLWSTIAHFKLSTLINEDALEREIRNVHRSNKRRNKLRSRLA--DF------ETNAARDSLSEEHIPNYKDQIAV------------LLLTWCQTICSSFGLAIKNFSTSFADGKALCYLIHYYHPGILPRQAVRPTSRDLPRSAGPHDDNCTERWGDSIFDESVTSDQFKDRILSERHNSSLANECMAELGGIPGMLPVFDTQNYPEEKSMIVCVAYLCSRLMESSQEILATLVIQDHYRQF 1076
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: A0A2R5G7A7_9STRA (Abnormal spindle-like microcephaly-associated protein-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G7A7_9STRA) HSP 1 Score: 154 bits (389), Expect = 5.130e-37 Identity = 100/264 (37.88%), Postives = 147/264 (55.68%), Query Frame = 1
Query: 37 ITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPD-LPPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHREL-LSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPRIGGTKNESENCSASLD-----TSKVKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKNIPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSY 807
I+ ++IVDGDR TL+LLW +I ++ L +L EAL E V + GK + +A+ + L V A R GE+ + E + T H E + LL WCQ++C +G+ VANFTTS A GRALCLL+H YHP +LP ++IR+TT + R E+ +A LD + + + + +LE ERAN L + LG VP +L FDS+N+PEEK ++ + +L +RLL S EI +A +Q +R +
Sbjct: 635 ISNRDIVDGDRRKTLALLWKMILKWKLDGVLPEEALCDETSRVRTMHGKT--ASRIMAKSEELAKHHKMQVRAQR-----GEA------TAEENQETEHTEAAMDVLLRWCQSICAHHGMRVANFTTSMASGRALCLLIHHYHPGLLPRESIRETTVDVCRA----RHPESYAADLDWAVHNVQDMPRSEYRRSLENERANFQLVNECATALGSVPVLLPQFDSENVPEEKMMLLFVTYLSSRLLVSRDEIAAATRIQAVWRQH 881
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: A0A7S4IHQ8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IHQ8_9STRA) HSP 1 Score: 152 bits (384), Expect = 2.370e-36 Identity = 101/260 (38.85%), Postives = 138/260 (53.08%), Query Frame = 1
Query: 37 ITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDLPPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPRIGGTKNESENCSASLDTSKVKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKNIPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSYVQR 816
I+ +IVDG R L LLW VIA + T LLD + L +E E V A K R+S + P+ + + L ES + D + R L+ LL WCQ VC +G + NFTTSFADG+A+CLL+H+YHP IL I TT L + +T K + + A+ ER N LA + + +GG+P ML FDS+++PEEK+II +A L +RL+ESS EI + I +Q YR Y QR
Sbjct: 868 ISGHHIVDGHRAPVLKLLWAVIAHFQFTKLLDEQTLQQEIEK-VRRANKSRQSATAYIINTTKPVA--ENSFLDESI---------IHDGFDIR------LIKLLLQWCQTVCSCFGFQMENFTTSFADGKAICLLLHYYHPGILRQTDILPTTRDLDLLPE------------ETGKKQSAELSRAISNERRNSNLANKRMLDIGGIPGMLPTFDSRDMPEEKSIILCVAFLCSRLMESSNEILATIAIQGCYRRYRQR 1097
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: UPI0006B0F883 (abnormal spindle-like microcephaly-associated protein homolog n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0F883) HSP 1 Score: 139 bits (351), Expect = 4.890e-32 Identity = 99/294 (33.67%), Postives = 153/294 (52.04%), Query Frame = 1
Query: 34 AITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDLPPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHL------PRIGGTKNES--ENCSASLDTSKVKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKN-IPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSYVQRKVNEGFAKGGSRARVEAERLSTRA 888
+IT ++I+DG+R+ TL LLW +I + + L+ +E + E + R+ +LAR P +A + D E E L LL WCQAVC +Y + V NFT SF+DGRALC L+H YHP +L K IR+ T+ + T +S EN + S+ + + L ER N+ LA +Q+LGG+P + P D N IP+EK +IT++ +L RL++ S EIR+A ILQ ++ +R++ + AK +A+++A + RA
Sbjct: 984 SITSRDIIDGNREKTLLLLWQIIFKTQVECLIKKEKMREEI--LYHQKSLSTRNQLALARLQNPSKVTEKIAQTK--------------DDDENVFNMENESLDFLLKWCQAVCTQYNIPVENFTVSFSDGRALCYLIHHYHPNVLQEKDIRQETSQSILQVQEGQDSTTLEDSFDENWTFSMGAGGTMSHKMEKLLANERENLKLAFDKMQELGGIPILTKPTDMSNTIPDEKVVITLVTYLSARLIDLSEEIRAARILQLAWK---RRQIRQEEAK--RKAKIKAATVIQRA 1256
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: UPI00138F9FE1 (abnormal spindle-like microcephaly-associated protein homolog n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138F9FE1) HSP 1 Score: 139 bits (351), Expect = 4.890e-32 Identity = 98/273 (35.90%), Postives = 136/273 (49.82%), Query Frame = 1
Query: 37 ITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDLPPL-GMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPRIGGTKNESEN----------CSASLDTSKVKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKN-IPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSYVQRK 819
ITP++IVDG R+ TL+LLW +I + + LL E L E +S + +H LA D+ + G+P + DS+E L LL WC+ VC YG+ + NFT SF+DGRALC L+H YHP +LPL AIR+ T L R G + S++ + S K + + ER N L + VQ LGGVP M D N IP+EK +IT ++L RLL+ E R+A +Q +R + RK
Sbjct: 839 ITPRHIVDGHREKTLNLLWMIIVNFQVNILLSEEKLKEE----ISFLEQSLDLEHCLAACDVSRIMGLP----------------RNKRDSLESGLYFKSARLGLLLKWCRLVCKSYGLKIDNFTVSFSDGRALCYLLHHYHPALLPLSAIRQETT-LTRNPGVLDSSDSEEDEGILRDSWAESYSPGSGKNHELERLKANERENFKLLAEKVQTLGGVPLMTKFADMSNTIPDEKVVITYTSYLCARLLDLRDEKRAARRIQVAWRRHKLRK 1090 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig77322.15408.1 >prot_H-elongata_contig77322.15408.1 ID=prot_H-elongata_contig77322.15408.1|Name=mRNA_H-elongata_contig77322.15408.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=415bp DGAICATTTATAITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALARback to top mRNA from alignment at H-elongata_contig77322:847..2873+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig77322.15408.1 ID=mRNA_H-elongata_contig77322.15408.1|Name=mRNA_H-elongata_contig77322.15408.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2027bp|location=Sequence derived from alignment at H-elongata_contig77322:847..2873+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig77322:847..2873+ >mRNA_H-elongata_contig77322.15408.1 ID=mRNA_H-elongata_contig77322.15408.1|Name=mRNA_H-elongata_contig77322.15408.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2490bp|location=Sequence derived from alignment at H-elongata_contig77322:847..2873+ (Himanthalia elongata Himel1 dioecious)back to top |