mRNA_H-elongata_contig77322.15408.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77322.15408.1
Unique NamemRNA_H-elongata_contig77322.15408.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 5.790e-94
Identity = 178/321 (55.45%), Postives = 204/321 (63.55%), Query Frame = 1
Query:   34 AITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDL------------------------------------------------------------PPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPRIGGTKNESENCSASLDTSKVKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKNIPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSYVQR 816
            A+TP+ IVDGDR ATL LLWF+I RYSL+ALLDR+ALAREAEGVVSAA KWRR+  S ARP+                                                             PPL +PDVAA+ E W                       LLSALL WCQAVCH YGV V NFTTSFADGRALCLL+H+YHP I+PL AIR+TTAHLPRIGG + E E+ SASLD SK+ + +CKAAL+GERANVALAR  V +LGGVPSMLAPFDS N PEEKTIITV+AHL  RLLESSAEIRS I++QR YRS+++R
Sbjct:  623 AVTPKEIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAEGVVSAARKWRRAGFSPARPEXXXXXXXXXXXXXXXXXXXXXXXXXXVGEATVVDFGVMSPGSXXXXXAPPAGGRAVAGEEHPPLELPDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHPRIIPLNAIRRTTAHLPRIGGGRGELEDWSASLDASKITEAECKAALDGERANVALARHCVAELGGVPSMLAPFDSTNRPEEKTIITVVAHLCARLLESSAEIRSTILVQRVYRSFLER 943          
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: A0A6H5KRH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH5_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 9.160e-93
Identity = 175/310 (56.45%), Postives = 205/310 (66.13%), Query Frame = 1
Query:   34 AITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDL------------------------------------PPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPRIGGTKNESENCSASLDTSK-------------VKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKNIPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSYVQR 816
            A++P++IVDGDR ATL LLWF+I RYSL+ALLDR+ALAREA+GV+SAA KWRR+  S ARP+                                     PPL +PDVAA+ E W                       LLSALL WCQAVCH YGV V NFTTSFADGRALCLL+H+YHP I+PL AIR+TTAHLPRIGG + E E+ SASLD SK             + + +CKAAL+GERANVALAR  V +LGGVPSMLAPFDS N PEEKTIITV+AHL  RLLESSAEIRS I++QR YRS+++R
Sbjct:  503 AVSPKDIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAQGVISAARKWRRAGFSPARPERAMGKMDAIDFGVMSPGSPASPVAPPAEGRAVAGDEHPPLELPDVAAMVEGWEEKAGXXXXXXXXXXXXXXXXXXLLSALLVWCQAVCHGYGVPVRNFTTSFADGRALCLLLHYYHPRIIPLNAIRRTTAHLPRIGGGRGELEDWSASLDPSKEVSCCAAEVDQGCITEAECKAALDGERANVALARHCVAELGGVPSMLAPFDSTNRPEEKTIITVVAHLCARLLESSAEIRSTILVQRVYRSFLER 812          
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: A0A835Z978_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z978_9STRA)

HSP 1 Score: 189 bits (480), Expect = 5.230e-49
Identity = 121/285 (42.46%), Postives = 160/285 (56.14%), Query Frame = 1
Query:    1 DGAICATTTATAITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDL---PPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPR-----------IGGTKNESENCSASLDTSKVKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKNIPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSYVQ 813
            DGA+   T       ++IVDG +  T+ LLW VI+RY L++L+D +AL RE   VV    + +R    L  P L   P L +P   A+      G SG              H +L  AL  W QAVCH YGV + NFTTSFADGRALCLLVH YHP +LPL  I KTT  L             +      +     +L+ S+V +  CKAAL+ ER NVAL  + V+ LGGVP ML  FDS + P+E+TI+  +A+L +RLL SSAEIR+   +QR YR++++
Sbjct:  677 DGALPLGTHEIGEAAKDIVDGHQGRTIGLLWAVISRYKLSSLVDVQALTREITAVV----RVQRKRQQLGLPTLHDGPRLCLPSAEAI------GLSG--------------HGDLQQALAVWAQAVCHGYGVPIHNFTTSFADGRALCLLVHHYHPCLLPLWRIVKTTNSLQHRATADDAPTEVLSPGSGNNNTWMLALEASQVTERDCKAALQRERQNVALFSKCVKALGGVPLMLPIFDSTDCPDERTIVAAIAYLASRLLASSAEIRATQTIQRTYRAHLK 937          
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: A0A7S3UNU8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNU8_HETAK)

HSP 1 Score: 169 bits (429), Expect = 1.930e-46
Identity = 112/269 (41.64%), Postives = 151/269 (56.13%), Query Frame = 1
Query:   58 DGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDLPPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPR-IGGTKNESENCSASLDTSK------------VKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKNI--PEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSYVQRK 819
            DG+R+ TL LLW +I RY + AL+D   L +E +GV ++    RR++   A      L +     L E     E    S  D  E            LL W QA+C  YGV V NF++SFADGRA CLLVH+YHP ++PL+ I KTTAHLPR  GG        +A L +++            V +   K AL GERAN ALA + V+ LGGVP++L P D+ ++  PEEKT +  LA+L  RL++SSAEIR+   LQR +R  + R+
Sbjct:    1 DGNREKTLLLLWLIIFRYKVCALVDLALLRQEIQGVRASPMWRRRAEFGRALAMKEGLAVGCEEPLVELDAPNEQDGDSSGDLSE--------FTGLLLQWAQAICLPYGVPVCNFSSSFADGRAFCLLVHYYHPRMIPLRQISKTTAHLPREYGGXXXXXXXSAADLLSAEEDLVSEAVLRPGVTEDMVKKALRGERANSALAAEQVRFLGGVPALL-PRDTDSLCPPEEKTTVVFLAYLCARLMDSSAEIRACRALQRAWRGRLARR 260          
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: A0A7S1Z0Q5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z0Q5_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.040e-42
Identity = 105/257 (40.86%), Postives = 140/257 (54.47%), Query Frame = 1
Query:   37 ITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDLPPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPRIGGTKNESENCSASLDTSKVKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKNIPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSY 807
            I+  ++VDG R   L LLW +IA Y L A+LD   L  E   V  A  K R    +     L      D  +   +        H   DS          L+  LL WCQAVC  +G  V NFTTSFADG+ALCLL+H+YHP IL  + I  TT  LP    T+N+ E+   ++    +   Q + AL+ ER N A+A + +  LGGVP MLA  DS NIPEEK++I  +A+L +RL+ESS EI + +++QR YR Y
Sbjct:  121 ISAHHVVDGHRPKVLKLLWSIIAHYQLRAVLDVTLLENEIRDVHRANRKRREYVAAF----LTRTSNVDEMSSENA--------HECEDSDN--------LVKLLLKWCQAVCSCFGYFVENFTTSFADGKALCLLMHYYHPGILRKEEILPTTRDLPNFFSTENQREHEKEAV-AHNIFDEQYENALQNERRNSAMANKRMSDLGGVPGMLAVTDSANIPEEKSMILCVAYLCSRLMESSKEIFATMVIQRCYRRY 356          
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: A0A7S2KPU1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KPU1_9STRA)

HSP 1 Score: 168 bits (426), Expect = 6.470e-42
Identity = 95/259 (36.68%), Postives = 148/259 (57.14%), Query Frame = 1
Query:   37 ITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDLPPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPRIGGTKNES--ENCSASLDTSKVKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKNIPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSY 807
            ++P+++VDG +   L LLW  IA + L+ L++ +AL RE   V  +  +  +    LA  D       +  A R+S       N+    +V             LL WCQ +C  +G+A+ NF+TSFADG+ALC L+H+YHP ILP +A+R T+  LPR  G  +++  E    S+    V   Q K  +  ER N +LA + + +LGG+P ML  FD++N PEEK++I  +A+L +RL+ESS EI + +++Q +YR +
Sbjct:  838 VSPKHVVDGHQSKVLKLLWSTIAHFKLSTLINEDALEREIRNVHRSNKRRNKLRSRLA--DF------ETNAARDSLSEEHIPNYKDQIAV------------LLLTWCQTICSSFGLAIKNFSTSFADGKALCYLIHYYHPGILPRQAVRPTSRDLPRSAGPHDDNCTERWGDSIFDESVTSDQFKDRILSERHNSSLANECMAELGGIPGMLPVFDTQNYPEEKSMIVCVAYLCSRLMESSQEILATLVIQDHYRQF 1076          
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: A0A2R5G7A7_9STRA (Abnormal spindle-like microcephaly-associated protein-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G7A7_9STRA)

HSP 1 Score: 154 bits (389), Expect = 5.130e-37
Identity = 100/264 (37.88%), Postives = 147/264 (55.68%), Query Frame = 1
Query:   37 ITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPD-LPPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHREL-LSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPRIGGTKNESENCSASLD-----TSKVKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKNIPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSY 807
            I+ ++IVDGDR  TL+LLW +I ++ L  +L  EAL  E   V +  GK   +   +A+ + L       V A R     GE+       + E + T H E  +  LL WCQ++C  +G+ VANFTTS A GRALCLL+H YHP +LP ++IR+TT  + R        E+ +A LD        + + + + +LE ERAN  L  +    LG VP +L  FDS+N+PEEK ++  + +L +RLL S  EI +A  +Q  +R +
Sbjct:  635 ISNRDIVDGDRRKTLALLWKMILKWKLDGVLPEEALCDETSRVRTMHGKT--ASRIMAKSEELAKHHKMQVRAQR-----GEA------TAEENQETEHTEAAMDVLLRWCQSICAHHGMRVANFTTSMASGRALCLLIHHYHPGLLPRESIRETTVDVCRA----RHPESYAADLDWAVHNVQDMPRSEYRRSLENERANFQLVNECATALGSVPVLLPQFDSENVPEEKMMLLFVTYLSSRLLVSRDEIAAATRIQAVWRQH 881          
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: A0A7S4IHQ8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IHQ8_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.370e-36
Identity = 101/260 (38.85%), Postives = 138/260 (53.08%), Query Frame = 1
Query:   37 ITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDLPPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPRIGGTKNESENCSASLDTSKVKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKNIPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSYVQR 816
            I+  +IVDG R   L LLW VIA +  T LLD + L +E E  V  A K R+S  +       P+   + + L ES          + D  + R      L+  LL WCQ VC  +G  + NFTTSFADG+A+CLL+H+YHP IL    I  TT  L  +              +T K +  +   A+  ER N  LA + +  +GG+P ML  FDS+++PEEK+II  +A L +RL+ESS EI + I +Q  YR Y QR
Sbjct:  868 ISGHHIVDGHRAPVLKLLWAVIAHFQFTKLLDEQTLQQEIEK-VRRANKSRQSATAYIINTTKPVA--ENSFLDESI---------IHDGFDIR------LIKLLLQWCQTVCSCFGFQMENFTTSFADGKAICLLLHYYHPGILRQTDILPTTRDLDLLPE------------ETGKKQSAELSRAISNERRNSNLANKRMLDIGGIPGMLPTFDSRDMPEEKSIILCVAFLCSRLMESSNEILATIAIQGCYRRYRQR 1097          
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: UPI0006B0F883 (abnormal spindle-like microcephaly-associated protein homolog n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0F883)

HSP 1 Score: 139 bits (351), Expect = 4.890e-32
Identity = 99/294 (33.67%), Postives = 153/294 (52.04%), Query Frame = 1
Query:   34 AITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDLPPLGMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHL------PRIGGTKNES--ENCSASLDTSKVKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKN-IPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSYVQRKVNEGFAKGGSRARVEAERLSTRA 888
            +IT ++I+DG+R+ TL LLW +I +  +  L+ +E +  E   +        R+  +LAR   P      +A  +              D  E       E L  LL WCQAVC +Y + V NFT SF+DGRALC L+H YHP +L  K IR+ T+         +   T  +S  EN + S+        + +  L  ER N+ LA   +Q+LGG+P +  P D  N IP+EK +IT++ +L  RL++ S EIR+A ILQ  ++   +R++ +  AK   +A+++A  +  RA
Sbjct:  984 SITSRDIIDGNREKTLLLLWQIIFKTQVECLIKKEKMREEI--LYHQKSLSTRNQLALARLQNPSKVTEKIAQTK--------------DDDENVFNMENESLDFLLKWCQAVCTQYNIPVENFTVSFSDGRALCYLIHHYHPNVLQEKDIRQETSQSILQVQEGQDSTTLEDSFDENWTFSMGAGGTMSHKMEKLLANERENLKLAFDKMQELGGIPILTKPTDMSNTIPDEKVVITLVTYLSARLIDLSEEIRAARILQLAWK---RRQIRQEEAK--RKAKIKAATVIQRA 1256          
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Match: UPI00138F9FE1 (abnormal spindle-like microcephaly-associated protein homolog n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138F9FE1)

HSP 1 Score: 139 bits (351), Expect = 4.890e-32
Identity = 98/273 (35.90%), Postives = 136/273 (49.82%), Query Frame = 1
Query:   37 ITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAREAEGVVSAAGKWRRSDHSLARPDLPPL-GMPDVAALRESWGGGESGNHSVSDSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVHFYHPWILPLKAIRKTTAHLPRIGGTKNESEN----------CSASLDTSKVKKWQCKAALEGERANVALARQSVQKLGGVPSMLAPFDSKN-IPEEKTIITVLAHLWNRLLESSAEIRSAIILQRYYRSYVQRK 819
            ITP++IVDG R+ TL+LLW +I  + +  LL  E L  E    +S   +    +H LA  D+  + G+P                 +  DS+E         L  LL WC+ VC  YG+ + NFT SF+DGRALC L+H YHP +LPL AIR+ T  L R  G  + S++           + S      K  + +     ER N  L  + VQ LGGVP M    D  N IP+EK +IT  ++L  RLL+   E R+A  +Q  +R +  RK
Sbjct:  839 ITPRHIVDGHREKTLNLLWMIIVNFQVNILLSEEKLKEE----ISFLEQSLDLEHCLAACDVSRIMGLP----------------RNKRDSLESGLYFKSARLGLLLKWCRLVCKSYGLKIDNFTVSFSDGRALCYLLHHYHPALLPLSAIRQETT-LTRNPGVLDSSDSEEDEGILRDSWAESYSPGSGKNHELERLKANERENFKLLAEKVQTLGGVPLMTKFADMSNTIPDEKVVITYTSYLCARLLDLRDEKRAARRIQVAWRRHKLRK 1090          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77322.15408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLN9_ECTSI5.790e-9455.45Similar to asp (Abnormal spindle)-like, microcepha... [more]
A0A6H5KRH5_9PHAE9.160e-9356.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z978_9STRA5.230e-4942.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3UNU8_HETAK1.930e-4641.64Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1Z0Q5_9STRA1.040e-4240.86Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S2KPU1_9STRA6.470e-4236.68Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A2R5G7A7_9STRA5.130e-3737.88Abnormal spindle-like microcephaly-associated prot... [more]
A0A7S4IHQ8_9STRA2.370e-3638.85Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
UPI0006B0F8834.890e-3233.67abnormal spindle-like microcephaly-associated prot... [more]
UPI00138F9FE14.890e-3235.90abnormal spindle-like microcephaly-associated prot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77322contigH-elongata_contig77322:847..2873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score321.6
Seed ortholog evalue5.3e-85
Seed eggNOG ortholog2880.D8LLN9
Preferred nameASPM
KEGG koko:K16743,ko:K16774
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000922,GO:0001764,GO:0002052,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007399,GO:0007405,GO:0007417,GO:0007420,GO:0007548,GO:0008150,GO:0008283,GO:0008284,GO:0008406,GO:0008584,GO:0009786,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010720,GO:0010721,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0016477,GO:0017145,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0021537,GO:0021543,GO:0021872,GO:0021873,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030154,GO:0030177,GO:0030496,GO:0030900,GO:0032501,GO:0032502,GO:0032504,GO:0036445,GO:0036449,GO:0040007,GO:0040011,GO:0042127,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045137,GO:0045177,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045769,GO:0046546,GO:0046661,GO:0048103,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051094,GO:0051179,GO:0051225,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051301,GO:0051302,GO:0051321,GO:0051445,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051653,GO:0051657,GO:0051661,GO:0051674,GO:0051704,GO:0051726,GO:0051782,GO:0051960,GO:0051961,GO:0051962,GO:0055057,GO:0060284,GO:0060322,GO:0060828,GO:0061351,GO:0061458,GO:0061842,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0071944,GO:0072089,GO:0072091,GO:0072686,GO:0072687,GO:0090263,GO:0090306,GO:0097150,GO:0097431,GO:0098590,GO:0098727,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140013,GO:1902692,GO:1903046,GO:1990752,GO:2000026,GO:2000177,GO:2000179,GO:2000241,GO:2000648
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759,KOG0165@1,KOG0165@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-04_005040.1
Exons4
Model size1247
Cds size1245
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77322.15408.1prot_H-elongata_contig77322.15408.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77322 847..2871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931178.6427937-CDS-H-elongata_contig77322:846..13111622931178.6427937-CDS-H-elongata_contig77322:846..1311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77322 847..1311 +
1691679730.5391083-CDS-H-elongata_contig77322:846..13111691679730.5391083-CDS-H-elongata_contig77322:846..1311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77322 847..1311 +
1622931178.6729372-CDS-H-elongata_contig77322:1595..17001622931178.6729372-CDS-H-elongata_contig77322:1595..1700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77322 1596..1700 +
1691679730.5519512-CDS-H-elongata_contig77322:1595..17001691679730.5519512-CDS-H-elongata_contig77322:1595..1700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77322 1596..1700 +
1622931178.6932518-CDS-H-elongata_contig77322:2029..21671622931178.6932518-CDS-H-elongata_contig77322:2029..2167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77322 2030..2167 +
1691679730.5694191-CDS-H-elongata_contig77322:2029..21671691679730.5694191-CDS-H-elongata_contig77322:2029..2167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77322 2030..2167 +
1622931178.72317-CDS-H-elongata_contig77322:2334..28711622931178.72317-CDS-H-elongata_contig77322:2334..2871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77322 2335..2871 +
1691679730.582165-CDS-H-elongata_contig77322:2334..28711691679730.582165-CDS-H-elongata_contig77322:2334..2871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77322 2335..2871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77322.15408.1

>prot_H-elongata_contig77322.15408.1 ID=prot_H-elongata_contig77322.15408.1|Name=mRNA_H-elongata_contig77322.15408.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=415bp
DGAICATTTATAITPQNIVDGDRDATLSLLWFVIARYSLTALLDREALAR
EAEGVVSAAGKWRRSDHSLARPDLPPLGMPDVAALRESWGGGESGNHSVS
DSVEGRRTSHRELLSALLAWCQAVCHRYGVAVANFTTSFADGRALCLLVH
FYHPWILPLKAIRKTTAHLPRIGGTKNESENCSASLDTSKVKKWQCKAAL
EGERANVALARQSVQKLGGVPSMLAPFDSKNIPEEKTIITVLAHLWNRLL
ESSAEIRSAIILQRYYRSYVQRKVNEGFAKGGSRARVEAERLSTRASLWP
NVSEAATTIQIAWREKVALYRRSVAASVIIQATVRCALAVAEYRRTILAV
EKIQTFWRGAAAVAFYRKQIGAVISVQSRWRCAVARSRYRRSVAASIVIQ
ATVRSALAVAEYRRT
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mRNA from alignment at H-elongata_contig77322:847..2873+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77322.15408.1 ID=mRNA_H-elongata_contig77322.15408.1|Name=mRNA_H-elongata_contig77322.15408.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2027bp|location=Sequence derived from alignment at H-elongata_contig77322:847..2873+ (Himanthalia elongata Himel1 dioecious)
GACGGAGCAATATGCGCCACGACGACAGCCACCGCGATCACACCTCAAAA TATCGTGGATGGCGATCGCGACGCCACCCTAAGCCTTCTGTGGTTTGTTA TCGCTAGGTACTCCCTCACTGCCCTACTTGACCGCGAAGCGCTCGCACGG GAGGCCGAAGGCGTGGTCTCTGCCGCCGGCAAGTGGCGTCGTTCTGACCA CTCCCTCGCCCGCCCCGATCTCCCTCCGCTGGGCATGCCGGACGTGGCCG CTCTGCGAGAGAGCTGGGGCGGCGGCGAAAGTGGAAACCACAGCGTCAGC GACAGCGTTGAAGGACGACGAACGAGCCACCGAGAGCTTCTCTCTGCGCT CCTTGCTTGGTGTCAGGCGGTTTGCCACCGTTACGGCGTGGCTGTGGCAA ACTTTACCACTTCTTTCGCCGATGGTCGTGCGCTGTGCCTGTTGGTTCAT TTCTACCACCCCTGGGTGAGAGAAAGCGCCATTCATCGATACGGGTGTTC ATCGCAACGGGGGAAAGATGTTCGCGTTACAGTTCATAGTTTCATTTTAT ACCATCGTTGCTGCTGGCTCTTTGCTTGGCTTGATGAAAAAACACTTGGG TTCAAGCTGGCAGCGATACGTCTTTGCACGCTGAGTACCGTTGGAAACCC CGTGGCGTGTTGTGATTATTTCAGCAGATATATATCCCTCTTTGTAGCAT ACTGCTTGTAACCCGCGATTCATTTTCCAACACTCCCCGCATTTTTCAGA TTCTCCCCCTTAAAGCTATCAGGAAGACCACGGCACACCTCCCCAGGATT GGTGGCACCAAGAACGAGTCTGAGAACTGCTCTGCGTCCCTTGACACCTC CAAGGTAAAGTAGTAGGCTTTTATTGTAACTGCTCGGTGCCACCGAGAGT ATATTTCCTTGGTGACTCTAATTACATCCCCGTTGTTGGAAAAAGCCTCC CCATTGTTGTGCAATGCGGCGTCCTACCTTGATTCTCGCGTTTATTTACC GGGGCTTATAGTACAAGACAGTGCGCTGTGTCGTCTTTCCCCCGATACGT GCGATTTTCATTCGATAGTTTGTTGTGGGGGAAAGGAAGGGGTTCAGAAA AATTCGGCAAAAATCCCACCAACTAAAAAACATTATGTCTACAGCTGAAA AACATTAGGGCATGTTTACCGGGCGTGGAGCAGGTGAAAAAATGGCAGTG CAAGGCGGCGCTGGAGGGAGAGCGAGCGAACGTAGCACTGGCACGGCAGT CAGTGCAGAAGCTCGGCGGCGTCCCTTCTATGCTGGCACCGTTCGATAGC AAAAACATTCCGGAGGAGAAGGTGCCATGAATATTTAAAAGCCATACTTT TAAAAGTTCTACCCATCCGACATATCTATTGCGTCCTCTTCCCAATCCAT GTGCTGAGAGCTGCCCTCCAAGACATAATTTTCTTGCTTTTGCATTTTCT CCCCCCCTGAACTTGCCGCATTCTATTCTCCATGTAAGACGATCATCACC GTTTTGGCACATCTCTGGAATCGACTCCTAGAGTCTAGCGCCGAGATCCG CTCGGCCATCATTCTGCAGCGGTACTACCGCTCCTACGTGCAGCGCAAAG TAAACGAGGGCTTCGCCAAGGGCGGATCAAGGGCCAGGGTGGAGGCGGAG AGGTTATCGACTAGGGCATCCCTTTGGCCGAACGTTTCGGAAGCGGCAAC AACCATCCAAATAGCGTGGCGGGAAAAAGTGGCTCTCTACCGCCGAAGCG TTGCGGCATCAGTTATCATCCAAGCCACTGTTCGCTGTGCTCTGGCGGTT GCGGAATATCGCCGAACAATCTTGGCGGTGGAAAAGATCCAGACCTTCTG GCGTGGCGCAGCTGCCGTGGCGTTCTATCGCAAACAGATTGGCGCCGTCA TTTCCGTTCAGTCCAGGTGGAGATGTGCCGTGGCGAGATCCCGATACCGT CGAAGCGTCGCGGCATCAATTGTTATCCAAGCCACTGTTCGCAGTGCTCT GGCGGTTGCGGAATATCGCCGAACAAT
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Coding sequence (CDS) from alignment at H-elongata_contig77322:847..2873+

>mRNA_H-elongata_contig77322.15408.1 ID=mRNA_H-elongata_contig77322.15408.1|Name=mRNA_H-elongata_contig77322.15408.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2490bp|location=Sequence derived from alignment at H-elongata_contig77322:847..2873+ (Himanthalia elongata Himel1 dioecious)
GACGGAGCAATATGCGCCACGACGACAGCCACCGCGATCACACCTCAAAA
TATCGTGGATGGCGATCGCGACGCCACCCTAAGCCTTCTGTGGTTTGTTA
TCGCTAGGTACTCCCTCACTGCCCTACTTGACCGCGAAGCGCTCGCACGG
GAGGCCGAAGGCGTGGTCTCTGCCGCCGGCAAGTGGCGTCGTTCTGACCA
CTCCCTCGCCCGCCCCGATCTCCCTCCGCTGGGCATGCCGGACGTGGCCG
CTCTGCGAGAGAGCTGGGGCGGCGGCGAAAGTGGAAACCACAGCGTCAGC
GACAGCGTTGAAGGACGACGAACGAGCCACCGAGAGCTTCTCTCTGCGCT
CCTTGCTTGGTGTCAGGCGGTTTGCCACCGTTACGGCGTGGCTGTGGCAA
ACTTTACCACTTCTTTCGCCGATGGTCGTGCGCTGTGCCTGTTGGTTCAT
TTCTACCACCCCTGGGACGGAGCAATATGCGCCACGACGACAGCCACCGC
GATCACACCTCAAAATATCGTGGATGGCGATCGCGACGCCACCCTAAGCC
TTCTGTGGTTTGTTATCGCTAGGTACTCCCTCACTGCCCTACTTGACCGC
GAAGCGCTCGCACGGGAGGCCGAAGGCGTGGTCTCTGCCGCCGGCAAGTG
GCGTCGTTCTGACCACTCCCTCGCCCGCCCCGATCTCCCTCCGCTGGGCA
TGCCGGACGTGGCCGCTCTGCGAGAGAGCTGGGGCGGCGGCGAAAGTGGA
AACCACAGCGTCAGCGACAGCGTTGAAGGACGACGAACGAGCCACCGAGA
GCTTCTCTCTGCGCTCCTTGCTTGGTGTCAGGCGGTTTGCCACCGTTACG
GCGTGGCTGTGGCAAACTTTACCACTTCTTTCGCCGATGGTCGTGCGCTG
TGCCTGTTGGTTCATTTCTACCACCCCTGGATTCTCCCCCTTAAAGCTAT
CAGGAAGACCACGGCACACCTCCCCAGGATTGGTGGCACCAAGAACGAGT
CTGAGAACTGCTCTGCGTCCCTTGACACCTCCAAGATTCTCCCCCTTAAA
GCTATCAGGAAGACCACGGCACACCTCCCCAGGATTGGTGGCACCAAGAA
CGAGTCTGAGAACTGCTCTGCGTCCCTTGACACCTCCAAGGTGAAAAAAT
GGCAGTGCAAGGCGGCGCTGGAGGGAGAGCGAGCGAACGTAGCACTGGCA
CGGCAGTCAGTGCAGAAGCTCGGCGGCGTCCCTTCTATGCTGGCACCGTT
CGATAGCAAAAACATTCCGGAGGAGAAGGTGAAAAAATGGCAGTGCAAGG
CGGCGCTGGAGGGAGAGCGAGCGAACGTAGCACTGGCACGGCAGTCAGTG
CAGAAGCTCGGCGGCGTCCCTTCTATGCTGGCACCGTTCGATAGCAAAAA
CATTCCGGAGGAGAAGACGATCATCACCGTTTTGGCACATCTCTGGAATC
GACTCCTAGAGTCTAGCGCCGAGATCCGCTCGGCCATCATTCTGCAGCGG
TACTACCGCTCCTACGTGCAGCGCAAAGTAAACGAGGGCTTCGCCAAGGG
CGGATCAAGGGCCAGGGTGGAGGCGGAGAGGTTATCGACTAGGGCATCCC
TTTGGCCGAACGTTTCGGAAGCGGCAACAACCATCCAAATAGCGTGGCGG
GAAAAAGTGGCTCTCTACCGCCGAAGCGTTGCGGCATCAGTTATCATCCA
AGCCACTGTTCGCTGTGCTCTGGCGGTTGCGGAATATCGCCGAACAATCT
TGGCGGTGGAAAAGATCCAGACCTTCTGGCGTGGCGCAGCTGCCGTGGCG
TTCTATCGCAAACAGATTGGCGCCGTCATTTCCGTTCAGTCCAGGTGGAG
ATGTGCCGTGGCGAGATCCCGATACCGTCGAAGCGTCGCGGCATCAATTG
TTATCCAAGCCACTGTTCGCAGTGCTCTGGCGGTTGCGGAATATCGCCGA
ACAACGATCATCACCGTTTTGGCACATCTCTGGAATCGACTCCTAGAGTC
TAGCGCCGAGATCCGCTCGGCCATCATTCTGCAGCGGTACTACCGCTCCT
ACGTGCAGCGCAAAGTAAACGAGGGCTTCGCCAAGGGCGGATCAAGGGCC
AGGGTGGAGGCGGAGAGGTTATCGACTAGGGCATCCCTTTGGCCGAACGT
TTCGGAAGCGGCAACAACCATCCAAATAGCGTGGCGGGAAAAAGTGGCTC
TCTACCGCCGAAGCGTTGCGGCATCAGTTATCATCCAAGCCACTGTTCGC
TGTGCTCTGGCGGTTGCGGAATATCGCCGAACAATCTTGGCGGTGGAAAA
GATCCAGACCTTCTGGCGTGGCGCAGCTGCCGTGGCGTTCTATCGCAAAC
AGATTGGCGCCGTCATTTCCGTTCAGTCCAGGTGGAGATGTGCCGTGGCG
AGATCCCGATACCGTCGAAGCGTCGCGGCATCAATTGTTATCCAAGCCAC
TGTTCGCAGTGCTCTGGCGGTTGCGGAATATCGCCGAACA
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