mRNA_H-elongata_contig77250.15399.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77250.15399.1
Unique NamemRNA_H-elongata_contig77250.15399.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77250.15399.1 vs. uniprot
Match: D8LT96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT96_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 3.430e-51
Identity = 90/120 (75.00%), Postives = 98/120 (81.67%), Query Frame = 1 
Query:    1 LVGVAINGLPLAETPVVEIYGPTQLLYSSIDGEEGNQ-LWNEDQGFFKVTCALSGDFVVIVRFKGRAGGAAAGPEGVLFRYYNHTCFLPVGDQVNLSKSKVDVMPSYRGQIPDDKFSLSL 357
            LVGVA+NGLPLAE PV+E+YGPTQLLYSS   EE +  LWNEDQGFFKV   L+GDFVVI RFKG  G A  GPEGVLFRY NHTCFLP G+QV L KS+VDVMPSYR QIPDD FS+SL
Sbjct:  240 LVGVALNGLPLAEPPVLEVYGPTQLLYSSTQEEEDSHVLWNEDQGFFKVNKPLTGDFVVIARFKGTDGAAETGPEGVLFRYCNHTCFLPQGEQVVLRKSEVDVMPSYRDQIPDDVFSVSL 359
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BLAST of mRNA_H-elongata_contig77250.15399.1 vs. uniprot
Match: A0A6H5JR06_9PHAE (FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR06_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.860e-49
Identity = 90/120 (75.00%), Postives = 98/120 (81.67%), Query Frame = 1 
Query:    1 LVGVAINGLPLAETPVVEIYGPTQLLYSSIDGEEGNQ-LWNEDQGFFKVTCALSGDFVVIVRFKGRAGGAAAGPEGVLFRYYNHTCFLPVGDQVNLSKSKVDVMPSYRGQIPDDKFSLSL 357
            LVGVA+NGLPLAE PV+E+YGPTQLLYSS   EE +  LWNEDQGFFKV   L+GDFVVI RFKG  G A  GPEGVLFRY NHTCFLP G+QV L KS+VDVMPSYR QIPDD FS+SL
Sbjct:  240 LVGVALNGLPLAEPPVLEVYGPTQLLYSSTQEEEDSHVLWNEDQGFFKVNKPLTGDFVVIARFKGTDGAAETGPEGVLFRYCNHTCFLPQGEQVVLRKSEVDVMPSYRDQIPDDVFSVSL 359
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77250.15399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT96_ECTSI3.430e-5175.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JR06_9PHAE1.860e-4975.00FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77250contigH-elongata_contig77250:339..1549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.7
Seed ortholog evalue1.6e-42
Seed eggNOG ortholog2880.D8LT96
KEGG koko:K18080
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG2283@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Exons3
Model size357
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77250.15399.1prot_H-elongata_contig77250.15399.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77250 339..1549 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931177.7331164-CDS-H-elongata_contig77250:338..3981622931177.7331164-CDS-H-elongata_contig77250:338..398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77250 339..398 -
1691679730.238356-CDS-H-elongata_contig77250:338..3981691679730.238356-CDS-H-elongata_contig77250:338..398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77250 339..398 -
1622931177.7473118-CDS-H-elongata_contig77250:726..9151622931177.7473118-CDS-H-elongata_contig77250:726..915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77250 727..915 -
1691679730.2500958-CDS-H-elongata_contig77250:726..9151691679730.2500958-CDS-H-elongata_contig77250:726..915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77250 727..915 -
1622931177.7634115-CDS-H-elongata_contig77250:1441..15491622931177.7634115-CDS-H-elongata_contig77250:1441..1549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77250 1442..1549 -
1691679730.2605333-CDS-H-elongata_contig77250:1441..15491691679730.2605333-CDS-H-elongata_contig77250:1441..1549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77250 1442..1549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77250.15399.1

>prot_H-elongata_contig77250.15399.1 ID=prot_H-elongata_contig77250.15399.1|Name=mRNA_H-elongata_contig77250.15399.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
LVGVAINGLPLAETPVVEIYGPTQLLYSSIDGEEGNQLWNEDQGFFKVTC
ALSGDFVVIVRFKGRAGGAAAGPEGVLFRYYNHTCFLPVGDQVNLSKSKV
DVMPSYRGQIPDDKFSLSL
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mRNA from alignment at H-elongata_contig77250:339..1549-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77250.15399.1 ID=mRNA_H-elongata_contig77250.15399.1|Name=mRNA_H-elongata_contig77250.15399.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1211bp|location=Sequence derived from alignment at H-elongata_contig77250:339..1549- (Himanthalia elongata Himel1 dioecious)
CTCGTTGGCGTTGCTATCAATGGCCTACCGCTGGCGGAGACCCCCGTGGT
GGAGATCTACGGCCCTACACAGCTACTCTACTCCAGCATTGACGGGGAGG
AGGGAAACGTGGTGTGTAGCGAGTGTTTTGGTTTTTGACTCACGTGTCCT
ATTCACCTCGGACAGGGTTTGCTAACGCGTCGGAAAAACAAACAAACGAG
TGTACGAAGTAGTTATTTTGAAATGGAGATTAAAACACTGCCTCGAAAGC
GTAGATAAGAGCCTCTTGAATGAAGGAGCGCTGGTGCTGCATGACGCTGC
GCCCTCAGTTTGCTTTGAATGTCTTGCGTGTTTCCGCCTTGAGTTCGGGT
GAGTCACCTTTGTCCCCTTTCCTTTCTCTCCCCACCCCTGCCAGGTCAGC
GAAACCCCGGTATGGTATGGTATTATGTACCATATCGCTCTGTCATGGCA
TTGTTGGGATGTGTGGTATGTGTCTGTTAGGATACATGTGTATAAATAGC
TACATATCCCCTCCCCCTCACCTACCCACCCTCCATTCGCTTTGGATGAT
GCTTTCATGGTGGCGCGTTCCTGCGATCTTGGGCTTCGCTGCGCTGCGTA
TATCCTGCACTGCGTTTTGCGGTACTGGGAAAAGCAGCTGTGGAATGAAG
ATCAGGGGTTTTTTAAAGTTACTTGCGCGTTGAGCGGGGACTTCGTCGTT
ATCGTGCGCTTCAAGGGGAGGGCCGGGGGAGCGGCTGCGGGGCCCGAGGG
TGTGCTCTTCCGATACTACAATCACACGTGCTTTCTGCCAGTCGGGGATC
AGGTCAACCTCAGCAAGTCGAAGGTGCGCTGCGTGCGCGTGTGTATCGTG
GGGGCATCTGTGGCAGTATTTTTGCCTTGTTGTTCCAACGCGTCACCAGG
GGTGTGATGGTACGCGACACACGTGAATGGTCTGAACTGTTGTCGTTGAA
GCGTGGCAATCGATCGTATGGTTACTCAGCGAGATCGTTTGAGAGCCCGT
GCCATCCTCTTGGCCTCTCAGTTGCAGCCAACGTACACGTGAATACCGAG
GTTCCTGTCCGGGGAACTTTGCTTCTCTTGCGTCTCCCTGTTGATACTTT
CTCCTCTTACGCGTCAACGCGATGGTGTTGTATGGGACTTTGTGGAGAAA
GGTGGATGTGATGCCGAGCTACCGAGGCCAGATCCCGGACGACAAGTTCA
GCTTGTCGCTA
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Coding sequence (CDS) from alignment at H-elongata_contig77250:339..1549-

>mRNA_H-elongata_contig77250.15399.1 ID=mRNA_H-elongata_contig77250.15399.1|Name=mRNA_H-elongata_contig77250.15399.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig77250:339..1549- (Himanthalia elongata Himel1 dioecious)
CTCGTTGGCGTTGCTATCAATGGCCTACCGCTGGCGGAGACCCCCGTGGT
GGAGATCTACGGCCCTACACAGCTACTCTACTCCAGCATTGACGGGGAGG
AGGGAAACCTCGTTGGCGTTGCTATCAATGGCCTACCGCTGGCGGAGACC
CCCGTGGTGGAGATCTACGGCCCTACACAGCTACTCTACTCCAGCATTGA
CGGGGAGGAGGGAAACCAGCTGTGGAATGAAGATCAGGGGTTTTTTAAAG
TTACTTGCGCGTTGAGCGGGGACTTCGTCGTTATCGTGCGCTTCAAGGGG
AGGGCCGGGGGAGCGGCTGCGGGGCCCGAGGGTGTGCTCTTCCGATACTA
CAATCACACGTGCTTTCTGCCAGTCGGGGATCAGGTCAACCTCAGCAAGT
CGAAGCAGCTGTGGAATGAAGATCAGGGGTTTTTTAAAGTTACTTGCGCG
TTGAGCGGGGACTTCGTCGTTATCGTGCGCTTCAAGGGGAGGGCCGGGGG
AGCGGCTGCGGGGCCCGAGGGTGTGCTCTTCCGATACTACAATCACACGT
GCTTTCTGCCAGTCGGGGATCAGGTCAACCTCAGCAAGTCGAAGGTGGAT
GTGATGCCGAGCTACCGAGGCCAGATCCCGGACGACAAGTTCAGCTTGTC
GCTAGTGGATGTGATGCCGAGCTACCGAGGCCAGATCCCGGACGACAAGT
TCAGCTTGTCGCTA
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