mRNA_H-elongata_contig7724.15397.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7724.15397.1
Unique NamemRNA_H-elongata_contig7724.15397.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7724.15397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7724contigH-elongata_contig7724:3282..6543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_003100.1
Exons4
Model size2074
Cds size1080
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7724.15397.1prot_H-elongata_contig7724.15397.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7724 4201..6468 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931177.2738836-UTR-H-elongata_contig7724:3281..42001622931177.2738836-UTR-H-elongata_contig7724:3281..4200Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7724 3282..4200 -
1691679729.9671786-UTR-H-elongata_contig7724:3281..42001691679729.9671786-UTR-H-elongata_contig7724:3281..4200Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7724 3282..4200 -
1622931177.366505-UTR-H-elongata_contig7724:6468..65431622931177.366505-UTR-H-elongata_contig7724:6468..6543Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7724 6469..6543 -
1691679730.0257952-UTR-H-elongata_contig7724:6468..65431691679730.0257952-UTR-H-elongata_contig7724:6468..6543Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7724 6469..6543 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931177.2920496-CDS-H-elongata_contig7724:4200..44311622931177.2920496-CDS-H-elongata_contig7724:4200..4431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7724 4201..4431 -
1691679729.9820077-CDS-H-elongata_contig7724:4200..44311691679729.9820077-CDS-H-elongata_contig7724:4200..4431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7724 4201..4431 -
1622931177.31173-CDS-H-elongata_contig7724:4860..51881622931177.31173-CDS-H-elongata_contig7724:4860..5188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7724 4861..5188 -
1691679729.9930146-CDS-H-elongata_contig7724:4860..51881691679729.9930146-CDS-H-elongata_contig7724:4860..5188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7724 4861..5188 -
1622931177.331011-CDS-H-elongata_contig7724:5604..57471622931177.331011-CDS-H-elongata_contig7724:5604..5747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7724 5605..5747 -
1691679730.003743-CDS-H-elongata_contig7724:5604..57471691679730.003743-CDS-H-elongata_contig7724:5604..5747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7724 5605..5747 -
1622931177.3494148-CDS-H-elongata_contig7724:6090..64681622931177.3494148-CDS-H-elongata_contig7724:6090..6468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7724 6091..6468 -
1691679730.0155382-CDS-H-elongata_contig7724:6090..64681691679730.0155382-CDS-H-elongata_contig7724:6090..6468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7724 6091..6468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7724.15397.1

>prot_H-elongata_contig7724.15397.1 ID=prot_H-elongata_contig7724.15397.1|Name=mRNA_H-elongata_contig7724.15397.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=360bp
MGKACHTPFSPSNSQRGGSKPLGTSVSDFSPVGSTAASDYAENTVVTEIG
NINPRSILQRSACDGVANVKQAVEGAYAAMMTGGTAPAAMFCVDGNTTED
EEGDSDEARDLFPDEPSQISMRMDRQARSTPAVLELLTLSAAENTKRSVM
TPKRPIAASALLELSDGTPRGMIRGIIGGAGKLRQPEDQHRSFPQVTDVP
KNIEEETPRRFIKGVLACNGSDEVAATALQETTTTPASVAAAKAAAAAAA
AAVPEISSTADGKNLQQKAPENIDIVEPKPDVAVSVLETAVPESESSATA
SRDFKIGGGRVASAGGIGRAIFNTALLINAIVLLCLVLFLLAALVYMYLT
EPLDNPPIY*
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mRNA from alignment at H-elongata_contig7724:3282..6543-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7724.15397.1 ID=mRNA_H-elongata_contig7724.15397.1|Name=mRNA_H-elongata_contig7724.15397.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3262bp|location=Sequence derived from alignment at H-elongata_contig7724:3282..6543- (Himanthalia elongata Himel1 dioecious)
ATCAGAAGAAGCGACGATGAACGTTGGGGTGGAGGTGTCGCTAAGGATGT
ACCAGCGTTGAGACCGGCCTCACTCATGGGAAAGGCGTGTCATACTCCAT
TTTCTCCGTCTAACTCTCAGAGGGGAGGGTCGAAACCGCTGGGCACCTCG
GTGAGTGACTTCTCACCCGTCGGGAGCACAGCAGCAAGCGATTATGCTGA
AAATACAGTGGTGACGGAAATCGGCAACATCAACCCCCGGTCCATCCTAC
AGCGCTCTGCATGTGACGGGGTTGCGAACGTTAAGCAGGCAGTAGAGGGG
GCTTACGCGGCGATGATGACGGGCGGTACCGCCCCTGCTGCGATGTTTTG
TGTCGACGGAAACACGACGGAAGACGAGGAGGGAGACTCGGATGAAGCGC
GGGATCTATTTCCTGACGAACCTTCTCAAATATCGATGCGTATGGATCGG
CAGGTGACGTGTTGAAACGAGCCATATAATGCCTATCATAATCCCGGCGA
CTCGTGTGCCATAGCCACCACCACTCCGAATCTGGAACCCTAGAACAAAT
GGTTGTGGCGATGATTCTTTAGATATATTGCGTGGTCTTGATCGATGCGA
TCGCTCCTTAGAACTCAGGCATTGATAGCGCACGTAATTTTGGGTCCATT
GATTTTGTGTAGATAGACAGCAGCTCTTACCCACCATAGGACGCCTAACT
CTGGGCCCAATTCATCCCGTAGCAGTGTGCACAAATCGAATCAGGGCGTA
AAATGCAGCCCGCAAACCATGCGCCATCGTTGATTATACGACCCAGGCGA
GGTCGACTCCTGCGGTTCTCGAACTTCTTACTTTATCAGCAGCCGAAAAT
ACGAAAAGGTCGGTAATGACACCAAAACGCCCCATCGCAGCATCTGCGCT
CTTGGAGCTTAGCGATGGAACTCCTCGGGGGATGATCAGGTGCTGAGACA
CTGGCTTGTGTTTCCACGGCCTACTTTTTTACATATACAAGGGACTCGCA
CCGTGTCCTTGCTCTAGCAGCAAAATATACTATAAAATATAGGGTTTCCA
CGTGTCATAAAAAGTGTATGAAAAGAATGCACTAAAGTGGAAAGAAACCT
AAACTAGTCTGCCAGTGGCGAACTAGTTTAGGTTCCTGCTCACTTTAGTG
CATGTTTTTCGTGTATTGTTTGTGGTACGTGGAAACCTATAATAGATCCC
GAAGCTTCAAGGTATGTGCCTCATTTGTGTACGTGAATAAAAAAGATGTT
GAGGGCCCCCGGGAGAAGTTACCTGCACCTATTCGGGTATCGAATCTATT
CGAAAAAAGCTGCAGACCCCACTCGACAGCTGTACACTTTTTTTATCGGC
GTCAGGGGGATCATCGGGGGAGCTGGAAAGCTTCGACAGCCAGAGGACCA
GCACCGTTCCTTCCCTCAGGTGACAGACGTGCCCAAAAATATCGAGGAAG
AAACGCCTCGGAGGTTCATCAAGGGAGTCTTAGCCTGTAACGGCAGCGAC
GAGGTCGCCGCGACAGCTTTACAAGAGACAACTACAACTCCGGCTTCTGT
CGCCGCGGCCAAAGCAGCCGCAGCTGCTGCGGCCGCTGCGGTACCTGAGA
TATCTTCCACGGCCGATGGCAAAAACCTTCAGCAGAAAGCCCCAGAAAAC
ATCGATATCGTTGAGCCAAAGCCGGACGTCGCGGTTAGTATGGTGTTGAT
TCGATGTGTAATACTCACGGGCAGAAATGCCAGAAATGCCTCATCAGCGC
TCTCCCCGGTTAACGTTTATCGGGTCGACGGGGGCATTGTGCTCCATATA
TAAATACTCGATTGTTCATGAGAGAGTCGGACGCGGTAATGCAATTTTTG
TCGTCGGTCGAGGATACGTACGTACAGTGCACCCAGTCCTCCACGAATAT
AGAGGCCAACTCTTATGATCGTCCGGTAAAAGAAAAGAGTGTCAAAACAT
CCTTACCGCAAGAACATTGGCAATCGCAGCTAGGCTTTCCCGTGTCGTTT
TTTTGGAGTGCCTGCGGGGTTGGAGAAAAATACAGAAAAATGTTGTGCCG
TTTGGAAACAAATCTCCCTCCCCCCCGCGGCATTGTCTTTTACGTTCTGC
ATGTTCCTTAAGGTTTCCGTGCTCGAGACAGCAGTTCCCGAGTCAGAATC
GAGCGCCACTGCTTCGCGTGATTTCAAGATTGGAGGAGGGCGCGTGGCAT
CCGCTGGCGGGATCGGCAGGGCGATTTTCAACACTGCCCTGTTGATCAAC
GCGATTGTCTTGCTGTGTTTGGTATTGTTCCTTCTGGCTGCGCTGGTGTA
CATGTACCTTACCGAACCTCTCGATAACCCTCCTATCTACTGACGGAAAA
CGAAGTCGGGATTCGACGGTGGTAGGAGAGATAAGACAAATACGAAATAA
TTCAATTCTTGGGAGCGACGTGGTGGGTAATTGAGATAAGTTTCAGTTGT
CGGAAGTAAGGAGATGTTGCGAGCGGTCCCCTGGAGTCTGGCAATGATCC
GCGCCCATTCTTTGCCAACTTGAGTGGTTAATTTGTGATGAGCTATCGCC
GGGCGGTCTCTTGCGTGGCGGACCGCAATAAAATCTCCTCTGGAGGCGTC
GGGGGTGTCGTCACGGTGGCAACGCGATCGTTTTTTTGTCGCGTGAAGTG
GGCACAGCACCCAATACAGATGTCATTTGCGTACGCACATCTGTAACAGC
CCGCAAACTTCTGGCGCAAAAAAAAGTAATGTGGACAACGTTCCATTAAG
GCTCCGAGCGTCGCGAGATACCATCGAGGAGAACGAGGAGGGGACAAAGG
TCAGAAGAGGCGTTTTTTCCTGCGACTTTTGACAAAGGGCTTAGTTTCCT
GCATCCGCTTAGAGGAGGTCCTACCTCTCTCTATACGCTGCTTGTTCTCC
CGAGGGAAGATAAGTCAAAGCGCTCGTGCAAGATTCAGTCAGGGGCAGAT
TAACTGGTTCGCTATGACTACGGCTACCTTTTCATGCCTGGTAGCGTTGC
TTGCCTGGATTAGCGTAGCATGCATTCATGGCGTTTACTTTACAGTAGGA
GGTACTGGCGTAGAATGCTACCATAAATATGGTAGCGCTGATTGGGAGTG
CGTTAACCAAGTGCTTAAGCCGAGCAGGAGGTTCGTCTTCATTTTTGGTT
TGAACGCTTTACTAGCACGGATTAAGGCGTGTACTTTTGAGAGACTGTAT
GGTGTGCATGGTATTCTCGGGAACAGCAATCGTAAGGATACTGAATGTGA
TAACGCCGAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig7724:3282..6543-

>mRNA_H-elongata_contig7724.15397.1 ID=mRNA_H-elongata_contig7724.15397.1|Name=mRNA_H-elongata_contig7724.15397.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2160bp|location=Sequence derived from alignment at H-elongata_contig7724:3282..6543- (Himanthalia elongata Himel1 dioecious)
ATGGGAAAGGCGTGTCATACTCCATTTTCTCCGTCTAACTCTCAGAGGGG
AGGGTCGAAACCGCTGGGCACCTCGGTGAGTGACTTCTCACCCGTCGGGA
GCACAGCAGCAAGCGATTATGCTGAAAATACAGTGGTGACGGAAATCGGC
AACATCAACCCCCGGTCCATCCTACAGCGCTCTGCATGTGACGGGGTTGC
GAACGTTAAGCAGGCAGTAGAGGGGGCTTACGCGGCGATGATGACGGGCG
GTACCGCCCCTGCTGCGATGTTTTGTGTCGACGGAAACACGACGGAAGAC
GAGGAGGGAGACTCGGATGAAGCGCGGGATCTATTTCCTGACGAACCTTC
TCAAATATCGATGCGTATGGATCGGCAGATGGGAAAGGCGTGTCATACTC
CATTTTCTCCGTCTAACTCTCAGAGGGGAGGGTCGAAACCGCTGGGCACC
TCGGTGAGTGACTTCTCACCCGTCGGGAGCACAGCAGCAAGCGATTATGC
TGAAAATACAGTGGTGACGGAAATCGGCAACATCAACCCCCGGTCCATCC
TACAGCGCTCTGCATGTGACGGGGTTGCGAACGTTAAGCAGGCAGTAGAG
GGGGCTTACGCGGCGATGATGACGGGCGGTACCGCCCCTGCTGCGATGTT
TTGTGTCGACGGAAACACGACGGAAGACGAGGAGGGAGACTCGGATGAAG
CGCGGGATCTATTTCCTGACGAACCTTCTCAAATATCGATGCGTATGGAT
CGGCAGGCGAGGTCGACTCCTGCGGTTCTCGAACTTCTTACTTTATCAGC
AGCCGAAAATACGAAAAGGTCGGTAATGACACCAAAACGCCCCATCGCAG
CATCTGCGCTCTTGGAGCTTAGCGATGGAACTCCTCGGGGGATGATCAGG
CGAGGTCGACTCCTGCGGTTCTCGAACTTCTTACTTTATCAGCAGCCGAA
AATACGAAAAGGTCGGTAATGACACCAAAACGCCCCATCGCAGCATCTGC
GCTCTTGGAGCTTAGCGATGGAACTCCTCGGGGGATGATCAGGGGGATCA
TCGGGGGAGCTGGAAAGCTTCGACAGCCAGAGGACCAGCACCGTTCCTTC
CCTCAGGTGACAGACGTGCCCAAAAATATCGAGGAAGAAACGCCTCGGAG
GTTCATCAAGGGAGTCTTAGCCTGTAACGGCAGCGACGAGGTCGCCGCGA
CAGCTTTACAAGAGACAACTACAACTCCGGCTTCTGTCGCCGCGGCCAAA
GCAGCCGCAGCTGCTGCGGCCGCTGCGGTACCTGAGATATCTTCCACGGC
CGATGGCAAAAACCTTCAGCAGAAAGCCCCAGAAAACATCGATATCGTTG
AGCCAAAGCCGGACGTCGCGGGGGATCATCGGGGGAGCTGGAAAGCTTCG
ACAGCCAGAGGACCAGCACCGTTCCTTCCCTCAGGTGACAGACGTGCCCA
AAAATATCGAGGAAGAAACGCCTCGGAGGTTCATCAAGGGAGTCTTAGCC
TGTAACGGCAGCGACGAGGTCGCCGCGACAGCTTTACAAGAGACAACTAC
AACTCCGGCTTCTGTCGCCGCGGCCAAAGCAGCCGCAGCTGCTGCGGCCG
CTGCGGTACCTGAGATATCTTCCACGGCCGATGGCAAAAACCTTCAGCAG
AAAGCCCCAGAAAACATCGATATCGTTGAGCCAAAGCCGGACGTCGCGGT
TTCCGTGCTCGAGACAGCAGTTCCCGAGTCAGAATCGAGCGCCACTGCTT
CGCGTGATTTCAAGATTGGAGGAGGGCGCGTGGCATCCGCTGGCGGGATC
GGCAGGGCGATTTTCAACACTGCCCTGTTGATCAACGCGATTGTCTTGCT
GTGTTTGGTATTGTTCCTTCTGGCTGCGCTGGTGTACATGTACCTTACCG
AACCTCTCGATAACCCTCCTATCTACTGAGTTTCCGTGCTCGAGACAGCA
GTTCCCGAGTCAGAATCGAGCGCCACTGCTTCGCGTGATTTCAAGATTGG
AGGAGGGCGCGTGGCATCCGCTGGCGGGATCGGCAGGGCGATTTTCAACA
CTGCCCTGTTGATCAACGCGATTGTCTTGCTGTGTTTGGTATTGTTCCTT
CTGGCTGCGCTGGTGTACATGTACCTTACCGAACCTCTCGATAACCCTCC
TATCTACTGA
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