mRNA_H-elongata_contig77142.15388.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77142.15388.1
Unique NamemRNA_H-elongata_contig77142.15388.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77142.15388.1 vs. uniprot
Match: D8LJA4_ECTSI (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJA4_ECTSI)

HSP 1 Score: 429 bits (1103), Expect = 1.160e-145
Identity = 230/378 (60.85%), Postives = 267/378 (70.63%), Query Frame = 1
Query:    1 VERQPTARPPALHPYTPQLRILSWNVNGIRAQVAKKKGRKALQQLVEKEQPHVLGLQEIRIKAVATDTTQDGRVRASTD----TYFVEVVQSLLPDYDTFWLSSFPPARIGYSGTALFIRRRGDCDIGCPRLLRVRGGMGNSITTDGDLEGRVTTVEYDVMFVVNVYTPNSGAELKRLSFRTCKWDQVFAAYVRGLEKVKPVVVIGDMNVAHEDKDLYNPKEKRMRQAAGTTPEERISFAEKLLGRDPPPSCRIMTEADSSEQRRGMD---------------------GHKRGPALVDTFRERYPDVHGVFSYWSTRARNRPMNRGMRLDYCLASRSLVDGPHGFLHDAFVLDAETVDVSDHCPVGVVLRLGDHFVE 1059
            VERQ T RP  LHPYTPQLR+LSWNVNGIRAQ+ K++GRKALQ ++ +E+PHVLGLQEIR  A  T +T  G+ R        + F ++V+++LPDYDT WLSS PPAR GY+GTALF+R++   DIGCP+LL VRGG+G+    +GDLEGRVTT E DV FVVNVYTPN+GA LKRL FRT  WDQ FAAYVR LEK+KPVVV+GDMNVAHED D YNP++KR R+AAGTTPEER SFA  LLG  P                                             G +LVDTFRE++P V GVFSYWS RARNRP+NRGMRLDYCLASR LV G    +HDAFVLD +TV VSDHCPVGVVLRLGDH+ E
Sbjct:  109 VERQTTTRPRPLHPYTPQLRVLSWNVNGIRAQMDKEEGRKALQGIIAQERPHVLGLQEIRTSA--TTSTPPGKTRRKKTPPQTSNFADIVKTILPDYDTIWLSSVPPARQGYAGTALFVRKKRSWDIGCPKLLGVRGGIGHP---EGDLEGRVTTAELDVAFVVNVYTPNAGAGLKRLDFRTKDWDQAFAAYVRDLEKIKPVVVVGDMNVAHEDVDFYNPEQKRTRKAAGTTPEERSSFAVNLLGCHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKAEGSGCSLVDTFREKHPKVTGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDG--VHDAFVLDRDTVGVSDHCPVGVVLRLGDHYPE 479          
BLAST of mRNA_H-elongata_contig77142.15388.1 vs. uniprot
Match: UPI001FB0E5BA (DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0E5BA)

HSP 1 Score: 192 bits (487), Expect = 4.650e-53
Identity = 131/343 (38.19%), Postives = 187/343 (54.52%), Query Frame = 1
Query:   16 TARPPALHPYTPQLRILSWNVNGIRAQVAKKKGRKALQQLVEKEQPHVLGLQEIRIKAVATDTTQDGRVRASTDTYFVEVVQSLLPDYD-TFWLSSFPPARIGYSGTALFIRRRGDCDIGCPRLLRVRGGMGNSITTDGDLEGRVTTVEYDVMFVVNVYTPNSGAELKRLSFRTCKWDQVFAAYVRGLEKVKPVVVIGDMNVAHEDKDLYNPKEKRMRQAAGTTPEERISFAEKLLGRDPPPSCRIMTEADSSEQRRGMDGHKRGPALVDTFRERYPDVHGVFSYWSTRARNRPMNRGMRLDYCLASRSLVDGPHGFLHDAFVLDAETVDVSDHCPVGVVLRL 1041
            T RP  L   T  ++++SWNVNG+RA + K K   A Q+L ++E   VL LQE +++    ++                + +SLL  Y+ +FW  S   +++GYSGTA+  R +          L  R G+G   TTD D EGR+ TVE++  +++N Y PNSG  LKRLS+RT +WD   + Y++ LEK KPVV+ GD+N AHE+ D+YNP   +  ++AG T EER SF    L +                              VDTFR+++P V G +SYW  R   R  NRG RLDY L S+S+ D     +HD+++L    V  SDHCP+G+VL+L
Sbjct:  235 TMRPLPLRTDTKSIKLMSWNVNGLRA-LLKLKSFSA-QELAKREDIDVLCLQETKLQEKDVES----------------IKESLLEGYENSFWTCSV--SKLGYSGTAIISRLK---------PLSTRYGLG---TTDHDSEGRLVTVEFETFYLLNAYVPNSGDGLKRLSYRTTQWDLSLSNYMKELEKSKPVVLTGDLNCAHEEIDIYNPDGNK--KSAGFTDEERQSFQLNFLSK----------------------------GFVDTFRKQHPGVVG-YSYWGYRHGGRKTNRGWRLDYFLVSKSIADQ----VHDSYILP--DVTGSDHCPIGLVLKL 508          
BLAST of mRNA_H-elongata_contig77142.15388.1 vs. uniprot
Match: A0A6J1DIY8_MOMCH (DNA-(apurinic or apyrimidinic site) endonuclease n=8 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1DIY8_MOMCH)

HSP 1 Score: 192 bits (488), Expect = 4.820e-53
Identity = 134/350 (38.29%), Postives = 192/350 (54.86%), Query Frame = 1
Query:   16 TARPPALHPYTPQLRILSWNVNGIRAQVAKKKGRKALQQLVEKEQPHVLGLQEIRIKAVATDTTQDGRVRAS-------TDTYFVEVVQSLLPDYD-TFWLSSFPPARIGYSGTALFIRRRGDCDIGCPRLLRVRGGMGNSITTDGDLEGRVTTVEYDVMFVVNVYTPNSGAELKRLSFRTCKWDQVFAAYVRGLEKVKPVVVIGDMNVAHEDKDLYNPKEKRMRQAAGTTPEERISFAEKLLGRDPPPSCRIMTEADSSEQRRGMDGHKRGPALVDTFRERYPDVHGVFSYWSTRARNRPMNRGMRLDYCLASRSLVDGPHGFLHDAFVLDAETVDVSDHCPVGVVLRL 1041
            T RP  L   T  L+ILSWNVNG+RA + K  G  AL  L E+E   +L LQE +++  +      GR R+S       T+   +E+ +SL+  Y  T+W  S   +++GYSGTA+  R +          L VR G+G S   + D EGR+   E+D  F+++VY PNSG  LKRLS+R  +WD   + Y++ LEK+KPV++ GD+N AH++ D+YNP   R  ++AG T EER SF    L +                              VDTFR+++P+V G ++YW  R   R  NRG RLDY L S S+ +     +HD+++L    V  SDHCP+G+VL+L
Sbjct:  231 TMRPSPLSKDTKSLKILSWNVNGLRA-LLKLGGFSALG-LAEREAFDILCLQETKLQPASRSERVGGRQRSSLGDGGFYTEKDILEIKKSLMDGYHHTYWTCSV--SKLGYSGTAIISRIQ---------PLSVRYGVGIS---EHDGEGRLVVAEFDSFFLLSVYVPNSGDGLKRLSYRITQWDLSLSKYIKELEKLKPVILSGDLNCAHQEIDIYNPAGNR--RSAGFTDEERKSFETNFLEK----------------------------GFVDTFRQQHPNVVG-YTYWGYRHGGRKTNRGWRLDYFLVSDSIAEK----VHDSYILP--DVGGSDHCPIGLVLKL 527          
BLAST of mRNA_H-elongata_contig77142.15388.1 vs. uniprot
Match: A0A078HC93_BRANA (DNA-(apurinic or apyrimidinic site) endonuclease n=4 Tax=Brassica TaxID=3705 RepID=A0A078HC93_BRANA)

HSP 1 Score: 191 bits (484), Expect = 2.720e-52
Identity = 129/343 (37.61%), Postives = 189/343 (55.10%), Query Frame = 1
Query:   16 TARPPALHPYTPQLRILSWNVNGIRAQVAKKKGRKALQQLVEKEQPHVLGLQEIRIKAVATDTTQDGRVRASTDTYFVEVVQSLLPDYD-TFWLSSFPPARIGYSGTALFIRRRGDCDIGCPRLLRVRGGMGNSITTDGDLEGRVTTVEYDVMFVVNVYTPNSGAELKRLSFRTCKWDQVFAAYVRGLEKVKPVVVIGDMNVAHEDKDLYNPKEKRMRQAAGTTPEERISFAEKLLGRDPPPSCRIMTEADSSEQRRGMDGHKRGPALVDTFRERYPDVHGVFSYWSTRARNRPMNRGMRLDYCLASRSLVDGPHGFLHDAFVLDAETVDVSDHCPVGVVLRL 1041
            T RPP L   T  ++I++WNVNG+RA + K +   ALQ L ++E   VL LQE +I+    +                EV ++L   YD +FW  S   +++GYSGTA+  R +          L VR G G S  +D D+EGR+ T E+D +++++ Y PNSG  LKRLS+R  +WD+  + Y++ LEK KPVV+ GD+N AHE+ D+YNP   +  ++AG T EER SF E  L +                             LVDTFR+++P V G ++YW  R   R  N+G RLDY L S S+       +HD+++L    ++ SDHCP+G++L+L
Sbjct:  273 TMRPPPLPEGTKSVKIMTWNVNGLRA-LLKLESFSALQ-LAQRENFDVLCLQETKIQVKDVE----------------EVKKALSDGYDHSFWSCSV--SKLGYSGTAIISRIK---------PLSVRYGTGLS-GSDHDIEGRIVTTEFDSLYLISTYVPNSGDGLKRLSYRIEEWDRTLSKYIKELEKTKPVVLTGDLNCAHEEIDIYNPAGNK--RSAGFTIEERQSFRENFLDK----------------------------GLVDTFRKQHPGVVG-YTYWGYRHGTRKTNKGWRLDYFLVSESIAAN----VHDSYILP--DINGSDHCPIGLILKL 548          
BLAST of mRNA_H-elongata_contig77142.15388.1 vs. uniprot
Match: A0A5J4ZKI9_9ASTE (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J4ZKI9_9ASTE)

HSP 1 Score: 189 bits (480), Expect = 9.610e-52
Identity = 137/343 (39.94%), Postives = 186/343 (54.23%), Query Frame = 1
Query:   16 TARPPALHPYTPQLRILSWNVNGIRAQVAKKKGRKALQQLVEKEQPHVLGLQEIRIKAVATDTTQDGRVRASTDTYFVEVVQSLLPDYD-TFWLSSFPPARIGYSGTALFIRRRGDCDIGCPRLLRVRGGMGNSITTDGDLEGRVTTVEYDVMFVVNVYTPNSGAELKRLSFRTCKWDQVFAAYVRGLEKVKPVVVIGDMNVAHEDKDLYNPKEKRMRQAAGTTPEERISFAEKLLGRDPPPSCRIMTEADSSEQRRGMDGHKRGPALVDTFRERYPDVHGVFSYWSTRARNRPMNRGMRLDYCLASRSLVDGPHGFLHDAFVLDAETVDVSDHCPVGVVLRL 1041
            T RPP L   T  ++I+SWNVNG+RA + K +G  ALQ L ++E   VL LQE ++        Q+  V A        V Q LL  Y+ +FW  S   +++GYSGTA+  R +          L VR G+G S   D D EGR+ TVE+D  F+++ Y PNSG  LKRLS+R  +WD   + Y++ LEK KPV++ GD+N AHE+ D+YNP   +  ++AG T EER SF    L R                              VDTFR ++P V G ++YW  R   R  NRG RLDY L S S+ D     +HD+++L    V  SDHCP+G++LRL
Sbjct:  271 TMRPPPLTGDTKFMKIMSWNVNGLRA-LLKLEGFSALQ-LAQREDFDVLCLQETKL--------QEKDVEA--------VKQCLLEGYENSFWTCSV--SKLGYSGTAIVSRIK---------PLSVRYGLGIS---DHDNEGRLVTVEFDKYFLISGYVPNSGDGLKRLSYRITQWDLSLSDYMKELEKSKPVILTGDLNCAHEEIDIYNPAGNK--RSAGFTDEERQSFETNFLFR----------------------------GFVDTFRRQHPGVVG-YTYWGYRHGGRKTNRGWRLDYFLVSESIADR----VHDSYILP--DVSGSDHCPIGLILRL 544          
BLAST of mRNA_H-elongata_contig77142.15388.1 vs. uniprot
Match: UPI0019011401 (DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X1 n=3 Tax=Benincasa hispida TaxID=102211 RepID=UPI0019011401)

HSP 1 Score: 187 bits (474), Expect = 2.700e-51
Identity = 127/341 (37.24%), Postives = 188/341 (55.13%), Query Frame = 1
Query:   22 RPPALHPYTPQLRILSWNVNGIRAQVAKKKGRKALQQLVEKEQPHVLGLQEIRIKAVATDTTQDGRVRASTDTYFVEVVQSLLPDYD-TFWLSSFPPARIGYSGTALFIRRRGDCDIGCPRLLRVRGGMGNSITTDGDLEGRVTTVEYDVMFVVNVYTPNSGAELKRLSFRTCKWDQVFAAYVRGLEKVKPVVVIGDMNVAHEDKDLYNPKEKRMRQAAGTTPEERISFAEKLLGRDPPPSCRIMTEADSSEQRRGMDGHKRGPALVDTFRERYPDVHGVFSYWSTRARNRPMNRGMRLDYCLASRSLVDGPHGFLHDAFVLDAETVDVSDHCPVGVVLRL 1041
            RP  L   T  ++ILSWNVNG+RA +   KG  A++ L E+E   +L LQE +++                +   +++ +SL+  Y  T+W  S   +++GYSGTA+  R +          + VR G+G S   + D EGRV TVE+D  F++NVY PNSG  LKRLS+R  +WD   + Y++ LEK+KPV++ GD+N AH++ D+YNP   R  ++AG T EER SFA   L +                              VDTFR+++PD+ G ++YW  R   R  N+G RLDY L S ++ +     +HD+++L    V  SDHCP+G+VL+L
Sbjct:  224 RPTPLSKDTKSVKILSWNVNGLRALL---KGFSAVE-LAEREDFDILCLQETKLQ----------------EKDILDIKKSLVDGYHYTYWTCSV--SKLGYSGTAIISRIQ---------PISVRYGVGIS---EHDGEGRVVTVEFDSFFLLNVYVPNSGDGLKRLSYRIAQWDPSLSNYMKELEKLKPVILTGDLNCAHQEIDIYNPAGNR--KSAGFTNEERQSFATNFLEK----------------------------GFVDTFRQKHPDIIG-YTYWGYRHGGRKTNKGWRLDYFLVSETMAEK----VHDSYILP--DVGGSDHCPIGLVLKL 493          
BLAST of mRNA_H-elongata_contig77142.15388.1 vs. uniprot
Match: A0A2J6KKF4_LACSA (DNA-(apurinic or apyrimidinic site) endonuclease n=12 Tax=Lactuca TaxID=4235 RepID=A0A2J6KKF4_LACSA)

HSP 1 Score: 186 bits (473), Expect = 6.150e-51
Identity = 134/343 (39.07%), Postives = 190/343 (55.39%), Query Frame = 1
Query:   16 TARPPALHPYTPQLRILSWNVNGIRAQVAKKKGRKALQQLVEKEQPHVLGLQEIRIKAVATDTTQDGRVRASTDTYFVEVVQSLLPDYD-TFWLSSFPPARIGYSGTALFIRRRGDCDIGCPRLLRVRGGMGNSITTDGDLEGRVTTVEYDVMFVVNVYTPNSGAELKRLSFRTCKWDQVFAAYVRGLEKVKPVVVIGDMNVAHEDKDLYNPKEKRMRQAAGTTPEERISFAEKLLGRDPPPSCRIMTEADSSEQRRGMDGHKRGPALVDTFRERYPDVHGVFSYWSTRARNRPMNRGMRLDYCLASRSLVDGPHGFLHDAFVLDAETVDVSDHCPVGVVLRL 1041
            T RPP L      ++++SWNVNG+RA + K +   AL+ L ++E   VL LQE ++        Q+  V A        + Q LL  Y+ +FW  S   +++GYSGTA+  R         P +  VR G+G S   D D EGR+ T E+D  ++++ Y PNSG  LKRLS+RT +WD   + YV+ LEK KPV++ GD+N AH++ D+YNP   +  ++AG T EER+SF E  L                          K+G   VDTFR+++P+V G ++YW  R   R  NRG RLDY L S S+ D     +HD+F+L    V  SDHCP+G+VL+L
Sbjct:  245 TMRPPPLADDAKHVKLMSWNVNGLRA-LLKLESFSALE-LAQREDFDVLCLQETKL--------QEKDVEA--------IKQRLLEGYENSFWTCSV--SKLGYSGTAIISR--------IPPVS-VRYGVGIS---DHDNEGRLVTTEFDSFYLISGYVPNSGDGLKRLSYRTTEWDPTLSNYVKELEKSKPVILTGDLNCAHQEIDIYNPAGNK--RSAGFTIEERMSFEENFL--------------------------KKG--FVDTFRKQHPNVVG-YTYWGFRHGGRKNNRGWRLDYFLVSESIADK----VHDSFILP--DVTGSDHCPIGLVLKL 518          
BLAST of mRNA_H-elongata_contig77142.15388.1 vs. uniprot
Match: A0A072VIQ1_MEDTR (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Medicago truncatula TaxID=3880 RepID=A0A072VIQ1_MEDTR)

HSP 1 Score: 186 bits (473), Expect = 9.560e-51
Identity = 130/343 (37.90%), Postives = 184/343 (53.64%), Query Frame = 1
Query:   16 TARPPALHPYTPQLRILSWNVNGIRAQVAKKKGRKALQQLVEKEQPHVLGLQEIRIKAVATDTTQDGRVRASTDTYFVEVVQSLLPDYD-TFWLSSFPPARIGYSGTALFIRRRGDCDIGCPRLLRVRGGMGNSITTDGDLEGRVTTVEYDVMFVVNVYTPNSGAELKRLSFRTCKWDQVFAAYVRGLEKVKPVVVIGDMNVAHEDKDLYNPKEKRMRQAAGTTPEERISFAEKLLGRDPPPSCRIMTEADSSEQRRGMDGHKRGPALVDTFRERYPDVHGVFSYWSTRARNRPMNRGMRLDYCLASRSLVDGPHGFLHDAFVLDAETVDVSDHCPVGVVLRL 1041
            T RPP L   T  +++LSWNVNG+RA + K +G  ALQ L ++E   VL LQE +++    +                E+ Q L+  Y+ +FW  S   +++GYSGTA+  R +          L +R G+G S   + D EGR+ TVE+D  ++V  Y PNSG  LKRLS+R  +WD   + Y++ LEK KPVV+ GD+N AHE+ D+YNP   +  ++AG T EER SF    L                                VDTFR+++P V G ++YW  R   R  NRG RLDY L S S+ D     +HD+++L    V  SDHCP+G+V++L
Sbjct:  269 TMRPPPLSRNTNFVKLLSWNVNGLRA-LLKLQGFSALQ-LAQREDFDVLCLQETKLQEKDIE----------------EIKQRLIDGYENSFWTCSV--SKLGYSGTAIISRIK---------PLSIRYGLGIS---EHDSEGRLVTVEFDTFYLVTGYVPNSGDGLKRLSYRVTEWDPALSNYLKELEKSKPVVLTGDLNCAHEEIDIYNPAGNK--RSAGFTDEERKSFETNFLSN----------------------------GFVDTFRKQHPGVVG-YTYWGYRHGGRKYNRGWRLDYFLVSESIADK----VHDSYILP--DVIGSDHCPIGLVMKL 542          
BLAST of mRNA_H-elongata_contig77142.15388.1 vs. uniprot
Match: A0A5C7IPK1_9ROSI (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7IPK1_9ROSI)

HSP 1 Score: 186 bits (473), Expect = 1.400e-50
Identity = 128/343 (37.32%), Postives = 184/343 (53.64%), Query Frame = 1
Query:   16 TARPPALHPYTPQLRILSWNVNGIRAQVAKKKGRKALQQLVEKEQPHVLGLQEIRIKAVATDTTQDGRVRASTDTYFVEVVQSLLPDYDT-FWLSSFPPARIGYSGTALFIRRRGDCDIGCPRLLRVRGGMGNSITTDGDLEGRVTTVEYDVMFVVNVYTPNSGAELKRLSFRTCKWDQVFAAYVRGLEKVKPVVVIGDMNVAHEDKDLYNPKEKRMRQAAGTTPEERISFAEKLLGRDPPPSCRIMTEADSSEQRRGMDGHKRGPALVDTFRERYPDVHGVFSYWSTRARNRPMNRGMRLDYCLASRSLVDGPHGFLHDAFVLDAETVDVSDHCPVGVVLRL 1041
            T RPP     T  +++LSWNVNG+RA + K +G  ALQ L ++E   VL LQE +++A   +   +             + +SL+  Y++ FW  S   +++GYSGTA+  R          + L V  G+G     D D EGRV T E+D  +++N Y PNSG  L+RL +R  +WD   ++Y++ LEK KPV++ GD+N AH++ D+YNP   R  ++AG T EER SF    L +                              VDTFR ++PDV G ++YW+ R   R  NRG RLDY L S S+ D  H    D+++L    V  SDHCP+G+VL+L
Sbjct:  287 TMRPPPPSGDTKSMKLLSWNVNGLRA-LLKLEGFSALQ-LAQREDFDVLCLQETKLQASMLEKDVES------------IRESLIDGYESSFWTCSV--SKLGYSGTAIISR---------VKPLSVTYGLG---IADPDSEGRVVTAEFDSFYLINCYVPNSGDGLRRLPYRIAEWDISLSSYMKELEKKKPVILTGDLNCAHQEIDIYNPAGNR--RSAGFTDEERQSFGTNFLSQ----------------------------GFVDTFRAQHPDVVG-YTYWAYRQGARKTNRGWRLDYFLVSGSIADKAH----DSYILP--DVGGSDHCPIGLVLKL 564          
BLAST of mRNA_H-elongata_contig77142.15388.1 vs. uniprot
Match: A0A0A0LF64_CUCSA (DNA-(apurinic or apyrimidinic site) endonuclease n=4 Tax=Cucumis sativus TaxID=3659 RepID=A0A0A0LF64_CUCSA)

HSP 1 Score: 184 bits (466), Expect = 4.620e-50
Identity = 128/341 (37.54%), Postives = 183/341 (53.67%), Query Frame = 1
Query:   22 RPPALHPYTPQLRILSWNVNGIRAQVAKKKGRKALQQLVEKEQPHVLGLQEIRIKAVATDTTQDGRVRASTDTYFVEVVQSLLPDYD-TFWLSSFPPARIGYSGTALFIRRRGDCDIGCPRLLRVRGGMGNSITTDGDLEGRVTTVEYDVMFVVNVYTPNSGAELKRLSFRTCKWDQVFAAYVRGLEKVKPVVVIGDMNVAHEDKDLYNPKEKRMRQAAGTTPEERISFAEKLLGRDPPPSCRIMTEADSSEQRRGMDGHKRGPALVDTFRERYPDVHGVFSYWSTRARNRPMNRGMRLDYCLASRSLVDGPHGFLHDAFVLDAETVDVSDHCPVGVVLRL 1041
            RP  L   T  ++ILSWNVNG+RA +   KG  A++ L E+E   VL LQE +++                +   + + +SL+  Y  T+W  S   +++GYSGTA+  R +          + VR G+G S   + D EGRV  VE+D  F++NVY PNSG  LKRLS+R  +WD   + Y++ LEK KPV++ GD+N AH++ DLYNP   R  ++AG T EER SF    L +                              VDTFR+++PDV G ++YW  R   R  N+G RLDY L S  + +     +HD+++L    V  SDHCP+G+VL+L
Sbjct:  232 RPKPLSKDTKSVKILSWNVNGLRALL---KGSSAVE-LAEREDFDVLCLQETKLQ----------------EKDILNITKSLVDGYHYTYWTCSV--SKLGYSGTAIISRIK---------PISVRYGLGIS---EHDGEGRVVMVEFDSFFLLNVYVPNSGDGLKRLSYRITQWDPSLSNYIKELEKSKPVILTGDLNCAHQEIDLYNPAGNR--KSAGFTNEERQSFETNFLQK----------------------------GFVDTFRQKHPDVVG-YTYWGYRHGGRKTNKGWRLDYFLVSERVAEK----VHDSYILP--DVGGSDHCPIGLVLKL 501          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77142.15388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJA4_ECTSI1.160e-14560.85DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
UPI001FB0E5BA4.650e-5338.19DNA-(apurinic or apyrimidinic site) endonuclease, ... [more]
A0A6J1DIY8_MOMCH4.820e-5338.29DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A078HC93_BRANA2.720e-5237.61DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A5J4ZKI9_9ASTE9.610e-5239.94DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
UPI00190114012.700e-5137.24DNA-(apurinic or apyrimidinic site) endonuclease, ... [more]
A0A2J6KKF4_LACSA6.150e-5139.07DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A072VIQ1_MEDTR9.560e-5137.90DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A5C7IPK1_9ROSI1.400e-5037.32DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A0A0LF64_CUCSA4.620e-5037.54DNA-(apurinic or apyrimidinic site) endonuclease n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77142contigH-elongata_contig77142:163..2740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score436.8
Seed ortholog evalue9.6e-120
Seed eggNOG ortholog2880.D8LJA4
Preferred nameARP
KEGG rclassRC00064,RC00090,RC00162
KEGG koko:K01142,ko:K01930,ko:K10771
KEGG ReactionR00942,R02237,R04241
KEGG Pathwayko00790,ko01100,ko01523,ko03410,map00790,map01100,map01523,map03410
KEGG ModuleM00296
GOsGO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004527,GO:0004528,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006289,GO:0006355,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009295,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016796,GO:0016895,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0033554,GO:0033683,GO:0034641,GO:0042578,GO:0042644,GO:0042646,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.double-stranded DNA 3'-5' exodeoxyribonuclease activity
EggNOG OGsCOG0708@1,KOG1294@2759
EC3.1.11.2,4.2.99.18,6.3.2.17
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-02_005340.1
Exons5
Model size1062
Cds size1062
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77142.15388.1prot_H-elongata_contig77142.15388.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77142 163..2740 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931176.160258-CDS-H-elongata_contig77142:162..6201622931176.160258-CDS-H-elongata_contig77142:162..620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77142 163..620 -
1691679729.4901137-CDS-H-elongata_contig77142:162..6201691679729.4901137-CDS-H-elongata_contig77142:162..620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77142 163..620 -
1622931176.180304-CDS-H-elongata_contig77142:874..11101622931176.180304-CDS-H-elongata_contig77142:874..1110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77142 875..1110 -
1691679729.5096316-CDS-H-elongata_contig77142:874..11101691679729.5096316-CDS-H-elongata_contig77142:874..1110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77142 875..1110 -
1622931176.2025971-CDS-H-elongata_contig77142:1356..14351622931176.2025971-CDS-H-elongata_contig77142:1356..1435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77142 1357..1435 -
1691679729.5195034-CDS-H-elongata_contig77142:1356..14351691679729.5195034-CDS-H-elongata_contig77142:1356..1435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77142 1357..1435 -
1622931176.2229366-CDS-H-elongata_contig77142:1652..18211622931176.2229366-CDS-H-elongata_contig77142:1652..1821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77142 1653..1821 -
1691679729.5296993-CDS-H-elongata_contig77142:1652..18211691679729.5296993-CDS-H-elongata_contig77142:1652..1821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77142 1653..1821 -
1622931176.23933-CDS-H-elongata_contig77142:2620..27401622931176.23933-CDS-H-elongata_contig77142:2620..2740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77142 2621..2740 -
1691679729.5398684-CDS-H-elongata_contig77142:2620..27401691679729.5398684-CDS-H-elongata_contig77142:2620..2740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77142 2621..2740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77142.15388.1

>prot_H-elongata_contig77142.15388.1 ID=prot_H-elongata_contig77142.15388.1|Name=mRNA_H-elongata_contig77142.15388.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=354bp
VERQPTARPPALHPYTPQLRILSWNVNGIRAQVAKKKGRKALQQLVEKEQ
PHVLGLQEIRIKAVATDTTQDGRVRASTDTYFVEVVQSLLPDYDTFWLSS
FPPARIGYSGTALFIRRRGDCDIGCPRLLRVRGGMGNSITTDGDLEGRVT
TVEYDVMFVVNVYTPNSGAELKRLSFRTCKWDQVFAAYVRGLEKVKPVVV
IGDMNVAHEDKDLYNPKEKRMRQAAGTTPEERISFAEKLLGRDPPPSCRI
MTEADSSEQRRGMDGHKRGPALVDTFRERYPDVHGVFSYWSTRARNRPMN
RGMRLDYCLASRSLVDGPHGFLHDAFVLDAETVDVSDHCPVGVVLRLGDH
FVE*
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mRNA from alignment at H-elongata_contig77142:163..2740-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77142.15388.1 ID=mRNA_H-elongata_contig77142.15388.1|Name=mRNA_H-elongata_contig77142.15388.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2578bp|location=Sequence derived from alignment at H-elongata_contig77142:163..2740- (Himanthalia elongata Himel1 dioecious)
GTGGAGCGGCAGCCAACGGCTAGGCCTCCGGCGCTTCACCCCTACACGCC CCAACTTCGGATCCTTTCATGGAACGTAAACGGAATCAGAGCCCAAGTTG CCAAGAAAAAAGGCAGAAAGGTAATTTTGTCGGACACACTACAAGTAGCG TCACTTTGTCATGCATCCGCTAGCCCTAACCCTAACCTTAACCCAAGGTA GTACATAGGGTTAGGGTTAGGGACTGATAATTGAAGATCTTCAGCAAAGA GGCCGAAATTCATGAATTCGCAGTAGCAGTAAGAGAAGTAGCAATCGGAG AAGTAGTAGTGGTAGTTATAGTAGTAGTAGTAGTATATAGTAGTAGTGAT AATAGTAGTAGTGGTAATAGTAGTAGGAGTAGTAATAAAAGTAGAAGTAG TAGTGGTAGTTATAGTAATAATAATAGTAACAGTAAGAATAATAGTAGTA GTAGTAATATTAAATAGTAGTAGTAGTAATAGTAGTTGTAATATAAGTAG TGGAAGTAGTAGTGGTAGTTATAGTAATAGTAGAAGTAATAGTAGTAGTA TTAAAGTACTAGTAGTAGCAATAGTTGAAGTGGTGGTGTTAGTGATATTA GTATTAATAGTTGCACTTAGTAGCAGCAGTAAAGGTGGTAGCAGTTATAA TAGTGGAAGTAGTTATAATAGTGGAAGTAGTTATAATAGTGGAAGTAGTA ATAATAGTAGTAGTAATAGTAGTGGTATTAGAGCAGTTCTATTATTAGAA CTATATGTAGGAGTGACAGTCCCGTGTTGCCGGCGCGCCGAAGCTGCGTT GAATCCCTCGTTAGTGTTCATGGCACGATATTATGAGCACTGTCATCGAG ATTATGGAGTCAATCAATGATTTTTAATCTATGTGTACATTCTACATTCC CACGGCTGCTGTCCGTCAGGCTTTACAGCAGCTGGTCGAGAAGGAGCAAC CCCACGTGCTTGGACTTCAGGAGATTCGGATTAAAGCTGTCGCCACCGAT ACGACCCAAGATGGACGCGTCAGGGCTTCTACCGACACGTACTTTGTGGA GGTGGTCCAGAGCCTGCTGCCGGATTACGACACGTTCTGTGAGTGGACTT TCTCCACCCACAGCTGTAGATCTGTGAGGGGCTAAGTAGCTGACTGTGTA ACTGTGTAGTATGTGACTGTGTAACTGTGTAGTATGTGACTGACTGGCGC CGTCGCAGCAGCTTGCGTCTGCGGAGTGGGAGCCTCGACTCGAAGGTGTT CTCTGGGGCTCCCTCCCACTTTTTTTCCGCTTTAAAATATTTTGGCTGTT TACAGGGCTTTCTAGTTTCCCCCCTGCGAGGATAGGGTACTCGGGTACGG CTTTATTCATTCGAAGGCGCGGAGACTGCGACATGTAAGCACGCACCTCA GCTTTACGTATTTTTTTACAGCACGAGAACTCCTGTAGACTAGGAGAATA ACCCCAGCCCAAATAAAAAACTAAAAGCTTTTGGCATGGATTATTAGCAA TCGACGATTACGCGGGCATGCACGTTTGGCTGACAAATACTGACAGCTGC GCTTTTTATTATTTCAAAATACGGTTTGCGCACGGCGGTTTATTAACGTT CCCCGCTTTTCGACGGTCTATTTCCTGCAGTGGATGCCCCCGGTTGCTGC GCGTTCGTGGTGGTATGGGGAACTCCATTACCACCGACGGAGACCTCGAG GGTAGGGTAACTACCGTCGAGTACGATGTTATGTTCGTTGTAAACGTGTA CACGCCGAATTCAGGGGCGGAACTGAAGAGACTAAGTTTCCGAACGTGTA AGTGGGATCAGGTCTTCGCAGCGTACGTGCGCGGACTGGAAAAGGTCAAG CCCGTAGTAGTAATTGGTGAGTCAATTCAAGCCAGGGCTAGCTTCTTAGG TTTATACTCATGTCGAGCTATTTGCCGGCGGTCACACCATAGCTGACGAT TTTGCGTTTTAACCTGCCTCGTTTTATTGTATTGTGCTTCGCCACAGCAA ATATTGCTCCGATTATGTAACGTCGTTCATTCGATACGATTGGGGAGTTA GGTTGTCACTTCGTCTGGGTTAGGGCTAGGGTTAGATGGTAACTTCGTTT GCTGCGTGCGCGTTCTAAAGGTGATATGAATGTGGCCCACGAGGATAAGG ACCTTTACAACCCCAAGGAAAAACGAATGCGCCAGGCGGCGGGAACGACC CCAGAGGAGCGAATATCTTTCGCCGAGAAACTTCTCGGCCGGGACCCACC ACCTTCGTGCAGGATCATGACAGAGGCAGACTCCTCTGAGCAACGGCGTG GTATGGACGGCCACAAAAGAGGCCCCGCGCTCGTGGACACCTTTCGCGAG AGGTATCCTGACGTTCACGGGGTGTTCAGCTACTGGTCGACTCGAGCGAG AAATCGACCGATGAATCGAGGAATGCGACTGGACTACTGTCTCGCCTCGC GGTCTCTCGTGGACGGGCCTCACGGCTTTTTGCATGATGCCTTCGTGTTG GACGCGGAAACGGTCGATGTCAGTGATCACTGTCCAGTTGGAGTTGTGCT TCGACTCGGCGACCACTTCGTTGAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig77142:163..2740-

>mRNA_H-elongata_contig77142.15388.1 ID=mRNA_H-elongata_contig77142.15388.1|Name=mRNA_H-elongata_contig77142.15388.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2124bp|location=Sequence derived from alignment at H-elongata_contig77142:163..2740- (Himanthalia elongata Himel1 dioecious)
GTGGAGCGGCAGCCAACGGCTAGGCCTCCGGCGCTTCACCCCTACACGCC
CCAACTTCGGATCCTTTCATGGAACGTAAACGGAATCAGAGCCCAAGTTG
CCAAGAAAAAAGGCAGAAAGGTGGAGCGGCAGCCAACGGCTAGGCCTCCG
GCGCTTCACCCCTACACGCCCCAACTTCGGATCCTTTCATGGAACGTAAA
CGGAATCAGAGCCCAAGTTGCCAAGAAAAAAGGCAGAAAGGCTTTACAGC
AGCTGGTCGAGAAGGAGCAACCCCACGTGCTTGGACTTCAGGAGATTCGG
ATTAAAGCTGTCGCCACCGATACGACCCAAGATGGACGCGTCAGGGCTTC
TACCGACACGTACTTTGTGGAGGTGGTCCAGAGCCTGCTGCCGGATTACG
ACACGTTCTGCTTTACAGCAGCTGGTCGAGAAGGAGCAACCCCACGTGCT
TGGACTTCAGGAGATTCGGATTAAAGCTGTCGCCACCGATACGACCCAAG
ATGGACGCGTCAGGGCTTCTACCGACACGTACTTTGTGGAGGTGGTCCAG
AGCCTGCTGCCGGATTACGACACGTTCTGGCTTTCTAGTTTCCCCCCTGC
GAGGATAGGGTACTCGGGTACGGCTTTATTCATTCGAAGGCGCGGAGACT
GCGACATGGCTTTCTAGTTTCCCCCCTGCGAGGATAGGGTACTCGGGTAC
GGCTTTATTCATTCGAAGGCGCGGAGACTGCGACATTGGATGCCCCCGGT
TGCTGCGCGTTCGTGGTGGTATGGGGAACTCCATTACCACCGACGGAGAC
CTCGAGGGTAGGGTAACTACCGTCGAGTACGATGTTATGTTCGTTGTAAA
CGTGTACACGCCGAATTCAGGGGCGGAACTGAAGAGACTAAGTTTCCGAA
CGTGTAAGTGGGATCAGGTCTTCGCAGCGTACGTGCGCGGACTGGAAAAG
GTCAAGCCCGTAGTAGTAATTGTGGATGCCCCCGGTTGCTGCGCGTTCGT
GGTGGTATGGGGAACTCCATTACCACCGACGGAGACCTCGAGGGTAGGGT
AACTACCGTCGAGTACGATGTTATGTTCGTTGTAAACGTGTACACGCCGA
ATTCAGGGGCGGAACTGAAGAGACTAAGTTTCCGAACGTGTAAGTGGGAT
CAGGTCTTCGCAGCGTACGTGCGCGGACTGGAAAAGGTCAAGCCCGTAGT
AGTAATTGGTGATATGAATGTGGCCCACGAGGATAAGGACCTTTACAACC
CCAAGGAAAAACGAATGCGCCAGGCGGCGGGAACGACCCCAGAGGAGCGA
ATATCTTTCGCCGAGAAACTTCTCGGCCGGGACCCACCACCTTCGTGCAG
GATCATGACAGAGGCAGACTCCTCTGAGCAACGGCGTGGTATGGACGGCC
ACAAAAGAGGCCCCGCGCTCGTGGACACCTTTCGCGAGAGGTATCCTGAC
GTTCACGGGGTGTTCAGCTACTGGTCGACTCGAGCGAGAAATCGACCGAT
GAATCGAGGAATGCGACTGGACTACTGTCTCGCCTCGCGGTCTCTCGTGG
ACGGGCCTCACGGCTTTTTGCATGATGCCTTCGTGTTGGACGCGGAAACG
GTCGATGTCAGTGATCACTGTCCAGTTGGAGTTGTGCTTCGACTCGGCGA
CCACTTCGTTGAGTAAGTGATATGAATGTGGCCCACGAGGATAAGGACCT
TTACAACCCCAAGGAAAAACGAATGCGCCAGGCGGCGGGAACGACCCCAG
AGGAGCGAATATCTTTCGCCGAGAAACTTCTCGGCCGGGACCCACCACCT
TCGTGCAGGATCATGACAGAGGCAGACTCCTCTGAGCAACGGCGTGGTAT
GGACGGCCACAAAAGAGGCCCCGCGCTCGTGGACACCTTTCGCGAGAGGT
ATCCTGACGTTCACGGGGTGTTCAGCTACTGGTCGACTCGAGCGAGAAAT
CGACCGATGAATCGAGGAATGCGACTGGACTACTGTCTCGCCTCGCGGTC
TCTCGTGGACGGGCCTCACGGCTTTTTGCATGATGCCTTCGTGTTGGACG
CGGAAACGGTCGATGTCAGTGATCACTGTCCAGTTGGAGTTGTGCTTCGA
CTCGGCGACCACTTCGTTGAGTAA
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