mRNA_H-elongata_contig77136.15387.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77136.15387.1
Unique NamemRNA_H-elongata_contig77136.15387.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig77136.15387.1 vs. uniprot
Match: A0A6H5KXQ5_9PHAE (Sulfatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXQ5_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 3.370e-70
Identity = 131/212 (61.79%), Postives = 149/212 (70.28%), Query Frame = 1 
Query:    1 RSKLQYESLLLTASMVGGLGCLGFDEAIGFAGEEEQGGREGFRSRGVHDKARKAFFLFIIFPFKHGTFEKVNYLGYDDHVVLNRSLSFLLGHPGGGNSREEYGDEARRGASGSE--GKLLTILTVGPHHHHDVPTDFPSDDIAPSAKASALMPGNTPTMSSLLGKYLAALRYQDLFLENLYARLDSAGLSDSTYVVVVGDHGEVQQSRGFQR 630
            RSKL Y+SLLLT SMVGGLG  G D AIGFAGE+EQGGREGF+SR V+DKAR        F FKHG FEKVNYLGYDDHVVLNRS+SFLLG        ++  ++ R G +G E  GKLLTILTVGPHHHHDVP+DF   D  P  +AS          +SL  KY  ALRYQDLFLE L+ +LD+ GLSD+TYVVVVGDHGE     GF +
Sbjct:  444 RSKLGYQSLLLTGSMVGGLGVFGHDHAIGFAGEKEQGGREGFKSRKVNDKARA-------FSFKHGAFEKVNYLGYDDHVVLNRSISFLLGE-------DQVQEDGRLGHNGGEAGGKLLTILTVGPHHHHDVPSDFLPQDFGPWEQAS--------DTNSLQYKYRVALRYQDLFLERLFKQLDNTGLSDNTYVVVVGDHGEAFNEHGFDK 633
[Close]
BLAST of mRNA_H-elongata_contig77136.15387.1 vs. uniprot
Match: A0A6J4QEQ8_9ACTN (Sulfatase domain-containing protein n=1 Tax=uncultured Rubrobacteraceae bacterium TaxID=349277 RepID=A0A6J4QEQ8_9ACTN)

HSP 1 Score: 62.4 bits (150), Expect = 7.750e-8
Identity = 44/136 (32.35%), Postives = 61/136 (44.85%), Query Frame = 1 
Query:  202 FEKVNYLGYDDHVVLNRSLSFLLGHPGGGNSREEYGDEARRGASGSEGKLLTILTVGPHH--HHDVPTDFPSDDIAPSAKASALMPGNTPTMSSLLGKYLAALRYQDLFLENLYARLDSAGLSDSTYVVVVGDHGE 603
            FEK NY GY+D ++L  S  +L          +E GDE            LT   +G  H  +  + T + S+D +  A                L  YL  +RYQDLFL+NL+ +    GL + T  V+ GDHGE
Sbjct:  401 FEKTNYFGYEDDILLEPSEEWL----------KENGDEP----------FLTEYLLGTGHDDYRCLSTRYGSEDFSEDAG---------------LNSYLNCIRYQDLFLKNLFDQYKELGLYEDTIFVIYGDHGE 501
[Close]
BLAST of mRNA_H-elongata_contig77136.15387.1 vs. uniprot
Match: A0A246JDL8_9BURK (Sulfatase domain-containing protein n=1 Tax=Roseateles aquatilis TaxID=431061 RepID=A0A246JDL8_9BURK)

HSP 1 Score: 53.5 bits (127), Expect = 7.700e-5
Identity = 34/91 (37.36%), Postives = 47/91 (51.65%), Query Frame = 1 
Query:  349 LLTILTVGPHHHHDVPTDFPSDDIAPSAKASALMPGNTPTMSSLLGKYLAALRYQDLFLENLYARLDSAGLSDSTYVVVVGDHGEVQQSRG 621
            L T LT+  HH    P  FP+D     A+A        P ++    +YLAALRY D  +  +   ++S GL D T++VVVGDHG+     G
Sbjct:  376 LATCLTLSSHH----PYRFPAD----GAEAP-------PAVAGEHERYLAALRYTDRCIARIVEGVESLGLRDRTWIVVVGDHGQAFGEHG 451
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77136.15387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KXQ5_9PHAE3.370e-7061.79Sulfatase domain-containing protein n=2 Tax=Ectoca... [more]
A0A6J4QEQ8_9ACTN7.750e-832.35Sulfatase domain-containing protein n=1 Tax=uncult... [more]
A0A246JDL8_9BURK7.700e-537.36Sulfatase domain-containing protein n=1 Tax=Roseat... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77136contigH-elongata_contig77136:62..2095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score230.3
Seed ortholog evalue8.1e-58
Seed eggNOG ortholog2880.D7FIV3
KEGG koko:K12376
EggNOG free text desc.sulfuric ester hydrolase activity
EggNOG OGsCOG3119@1,KOG3731@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSulfatase
Ec32 orthologEc-07_007630.1
Exons5
Model size630
Cds size630
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77136.15387.1prot_H-elongata_contig77136.15387.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77136 62..2095 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931176.0507376-CDS-H-elongata_contig77136:61..1781622931176.0507376-CDS-H-elongata_contig77136:61..178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77136 62..178 -
1691679729.4274018-CDS-H-elongata_contig77136:61..1781691679729.4274018-CDS-H-elongata_contig77136:61..178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77136 62..178 -
1622931176.070067-CDS-H-elongata_contig77136:465..5431622931176.070067-CDS-H-elongata_contig77136:465..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77136 466..543 -
1691679729.438473-CDS-H-elongata_contig77136:465..5431691679729.438473-CDS-H-elongata_contig77136:465..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77136 466..543 -
1622931176.0893815-CDS-H-elongata_contig77136:988..10571622931176.0893815-CDS-H-elongata_contig77136:988..1057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77136 989..1057 -
1691679729.448886-CDS-H-elongata_contig77136:988..10571691679729.448886-CDS-H-elongata_contig77136:988..1057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77136 989..1057 -
1622931176.1098611-CDS-H-elongata_contig77136:1228..14141622931176.1098611-CDS-H-elongata_contig77136:1228..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77136 1229..1414 -
1691679729.4595969-CDS-H-elongata_contig77136:1228..14141691679729.4595969-CDS-H-elongata_contig77136:1228..1414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77136 1229..1414 -
1622931176.1214545-CDS-H-elongata_contig77136:1915..20951622931176.1214545-CDS-H-elongata_contig77136:1915..2095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77136 1916..2095 -
1691679729.4700868-CDS-H-elongata_contig77136:1915..20951691679729.4700868-CDS-H-elongata_contig77136:1915..2095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77136 1916..2095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77136.15387.1

>prot_H-elongata_contig77136.15387.1 ID=prot_H-elongata_contig77136.15387.1|Name=mRNA_H-elongata_contig77136.15387.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=210bp
RSKLQYESLLLTASMVGGLGCLGFDEAIGFAGEEEQGGREGFRSRGVHDK
ARKAFFLFIIFPFKHGTFEKVNYLGYDDHVVLNRSLSFLLGHPGGGNSRE
EYGDEARRGASGSEGKLLTILTVGPHHHHDVPTDFPSDDIAPSAKASALM
PGNTPTMSSLLGKYLAALRYQDLFLENLYARLDSAGLSDSTYVVVVGDHG
EVQQSRGFQR
back to top

mRNA from alignment at H-elongata_contig77136:62..2095-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77136.15387.1 ID=mRNA_H-elongata_contig77136.15387.1|Name=mRNA_H-elongata_contig77136.15387.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2034bp|location=Sequence derived from alignment at H-elongata_contig77136:62..2095- (Himanthalia elongata Himel1 dioecious)
AGGTCAAAGTTGCAGTACGAGTCCCTGCTCCTAACCGCTTCCATGGTGGG
GGGGCTCGGCTGCCTGGGTTTCGACGAAGCGATTGGCTTCGCGGGCGAGG
AGGAGCAGGGCGGTAGGGAGGGTTTCCGATCAAGAGGCGTACACGACAAG
GCGCGAAAGGCGTTTTTTCTCTTTATTATAGTAATGTGTGTGCTCTGGAA
TTATCTAGTGTGGGGAATCGCGTTGAGCCGCCAGAAGCTATCAAAAGGCG
AAGAAATCTTCGGTCAAACTTTGGGACACAAACAAAATGAGGATGTGTTC
CATTTTTTCCCCTCACCGTAGCAGGGTTGAACTTTGCCAACAATCCATCC
AAAACCTCTGGGCTTTCGATCTCAGCCAAATGGTTAACCAGAGGATGCCA
TAGGAAGCAGTTTTCCTATTATCAGCAAGACGTATACAATGTAGCCGAGA
GTTTAAATGGTCTTGTTTTTTTCCTCCCCCTCCGTACACCGCTTCCACGA
AACGGGTCGAGCATTTCGCGGAACTTTTTTTCCCGCCCGGTGCGAGAACC
GCCGCTGCTCAAGCTCTATTTCCACCCTTGGCCGACTTTGGTGCTGTAAA
CATGACTCCATCTATGCGCTGCTTTTGCTCGGCGGGCTTCGTTTTTCCCT
CCCCCCTCCCCCCCTCCCCTTCTTTCCACAGTTTCCCTTCAAGCACGGAA
CGTTCGAGAAGGTGAACTACCTCGGCTACGACGACCACGTGGTGCTCAAC
CGTTCCCTGTCGTTTCTTCTCGGCCATCCCGGCGGTGGGAACTCCCGGGA
AGAGTACGGCGACGAGGCGCGTCGGGGCGCAAGCGGATCCGAAGGCAAGC
TGCTGACCATTCTCACGGTAAGCTTCCGCGGGGGGTCTGTACCCTCCTCG
CTACACACACACACACACACACATACCTTTGCGCAGGTGCTTCGAGATTT
AATGTCGTGCTGCGACCCGTATCATGCCGATTTCCGGGAAGCCAGACTCT
GCTTGAACCCCCGTGGACGCTATGTTGCCTCCACTCAGGTGGGCCCCCAC
CATCACCACGATGTCCCGACGGACTTCCCATCTGACGACATCGCGCCCTC
GGCCAAGGTGGATCGCGTTGAATTGATTGCGAGCATCTATTGTTTCCGCT
GTTCCCCTTCCCTAGTGAACGGGCATAGTTATCGGTATTTGCAAGCACTC
CCCGCTTTGCATTCTTGTTAAGCGCACGCACACAGAGACTGATGTTGTGT
GATGCGTGTGTTTGTCAAATATTAACCGAAATGTTCCCGCTTGTTGACAA
CACGCAGTCAGACTAGAACCAGCATGACAAGCTCCGATCTCCCCACCACG
CCAAATAACAACTGCGGATGCCGATCAAGAGGCAGACAGCCTTGCGCAGC
TTCGCAGCAGGCATTCGATTGTTTTGTCACTTCGTGACCGTCATGCGTTG
CCGTAAGGTTGTGCGACCGTCATGCATCGTGAGGCTAAGTCGATTGCCGT
GTGCCCCTCCGTTCCTCCTCCACGTCATCTTCCCGTTTCCCGTCCAGTGT
AGGCGTCCGCCTTGATGCCGGGTAACACCCCGACAATGTCGTCCTTGCTG
GGAAAATACCTCGCAGCCCTGCGCTATCAGGTACTCCTGGAGCCAGAGAA
TCTCGGGAGAGGCGCCACGTGATTCGTTCCGCTGCTTGCTTCTGTCAAAC
GCAGACTTCCACTCAAGCCTATGGCAATTTGCTCTTTCTCGATTACTCTC
TATGGAAATACACACTTTGCTGCCGTTGCTTCGAGCTTAGGGTTCTGTTA
ATAACAAGAGAAGCGGAGGGTTTTGATATCCGGGGGTGGGGGGGATGGGG
GGTGCGGTTGTCGACCCTCTCCTCTCTATTTTTCTCTCTTGGCCTTTTCT
TGAACATATGTACGCAGGACCTCTTCCTGGAAAATTTGTACGCCCGATTG
GATAGCGCGGGCCTGTCTGACAGCACATACGTGGTCGTCGTCGGGGATCA
CGGAGAGGTACAGCAATCAAGAGGGTTTCAACGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig77136:62..2095-

>mRNA_H-elongata_contig77136.15387.1 ID=mRNA_H-elongata_contig77136.15387.1|Name=mRNA_H-elongata_contig77136.15387.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1260bp|location=Sequence derived from alignment at H-elongata_contig77136:62..2095- (Himanthalia elongata Himel1 dioecious)
AGGTCAAAGTTGCAGTACGAGTCCCTGCTCCTAACCGCTTCCATGGTGGG
GGGGCTCGGCTGCCTGGGTTTCGACGAAGCGATTGGCTTCGCGGGCGAGG
AGGAGCAGGGCGGTAGGGAGGGTTTCCGATCAAGAGGCGTACACGACAAG
GCGCGAAAGGCGTTTTTTCTCTTTATTATAAGGTCAAAGTTGCAGTACGA
GTCCCTGCTCCTAACCGCTTCCATGGTGGGGGGGCTCGGCTGCCTGGGTT
TCGACGAAGCGATTGGCTTCGCGGGCGAGGAGGAGCAGGGCGGTAGGGAG
GGTTTCCGATCAAGAGGCGTACACGACAAGGCGCGAAAGGCGTTTTTTCT
CTTTATTATATTTCCCTTCAAGCACGGAACGTTCGAGAAGGTGAACTACC
TCGGCTACGACGACCACGTGGTGCTCAACCGTTCCCTGTCGTTTCTTCTC
GGCCATCCCGGCGGTGGGAACTCCCGGGAAGAGTACGGCGACGAGGCGCG
TCGGGGCGCAAGCGGATCCGAAGGCAAGCTGCTGACCATTCTCACGTTTC
CCTTCAAGCACGGAACGTTCGAGAAGGTGAACTACCTCGGCTACGACGAC
CACGTGGTGCTCAACCGTTCCCTGTCGTTTCTTCTCGGCCATCCCGGCGG
TGGGAACTCCCGGGAAGAGTACGGCGACGAGGCGCGTCGGGGCGCAAGCG
GATCCGAAGGCAAGCTGCTGACCATTCTCACGGTGGGCCCCCACCATCAC
CACGATGTCCCGACGGACTTCCCATCTGACGACATCGCGCCCTCGGCCAA
GGTGGGCCCCCACCATCACCACGATGTCCCGACGGACTTCCCATCTGACG
ACATCGCGCCCTCGGCCAAGGCGTCCGCCTTGATGCCGGGTAACACCCCG
ACAATGTCGTCCTTGCTGGGAAAATACCTCGCAGCCCTGCGCTATCAGGC
GTCCGCCTTGATGCCGGGTAACACCCCGACAATGTCGTCCTTGCTGGGAA
AATACCTCGCAGCCCTGCGCTATCAGGACCTCTTCCTGGAAAATTTGTAC
GCCCGATTGGATAGCGCGGGCCTGTCTGACAGCACATACGTGGTCGTCGT
CGGGGATCACGGAGAGGTACAGCAATCAAGAGGGTTTCAACGAGACCTCT
TCCTGGAAAATTTGTACGCCCGATTGGATAGCGCGGGCCTGTCTGACAGC
ACATACGTGGTCGTCGTCGGGGATCACGGAGAGGTACAGCAATCAAGAGG
GTTTCAACGA
back to top