mRNA_H-elongata_contig7713.15386.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7713.15386.1
Unique NamemRNA_H-elongata_contig7713.15386.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7713.15386.1 vs. uniprot
Match: A0A6H5J884_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J884_9PHAE)

HSP 1 Score: 362 bits (928), Expect = 1.240e-112
Identity = 199/349 (57.02%), Postives = 259/349 (74.21%), Query Frame = 2 
Query:  149 DGGSRRASCSGEPDRRAGVRRKRDIIDPVSPCAKFNSLQWRMSYASRKEECNALDSCVFIGRAITGACASRDPSLLLRRGSSKNLPNVPLVLPEKDAEERK--AALQRHHAAKKMEETIDELETEFQKE-----KDEQLAARRFQELMDPLDVEEATQERALAILREEGMAALQVFVQSQLANAAAEELRCQKASTKAFAKDFLIQVLQNEELPGHFGKMLRVIFQDPSLATGVRQLIYAAISLDHTFTNSFQLTRNLVTWLLTGTDWMDEQALGLCVYLVGLPETELAASWLVAWAISKPGILDLPASKAVAQSLPLGSQEVTKALTTACASALQSEWAQELAKATTL 1174
            DGGSRR       + R    R  +  +PV+PCA+FN+L+WRMSYA RK +CN  DSCVF+GR++TGAC  RDPS+L +R   ++ PNVPLVLP+ D   +K  AALQR H AK M ETIDELE+EF+ +      D +LAA +F+ELM  LDVEE+TQE ALAIL+EEGM A+QVFV+SQLANAAAEELR QK++T+AFAKDFL++V++  ELPG  G ML  +F+DP+L+TG+R LIY A+ LD+T+ +S  LT  L+ WLL+ TDWMD +A  LC YLV L +TELA   LVAWAI +PGILD  +S+ +A SLPLGSQ++T ++  A    L+S+WA E+AK+TT+
Sbjct:   41 DGGSRRRG-----NNRRVRERSEEEAEPVNPCAEFNTLKWRMSYAHRKNDCNGEDSCVFVGRSVTGACVPRDPSILHKR---RSFPNVPLVLPDSDGSTKKLQAALQRQHTAKVMSETIDELESEFEHKGVEPYSDTKLAANKFRELMSALDVEESTQELALAILQEEGMHAVQVFVKSQLANAAAEELRYQKSATEAFAKDFLMEVIREPELPGQMGHMLESVFKDPALSTGIRHLIYNAVGLDYTYQSSLTLTIPLIRWLLSETDWMDAEAAKLCAYLVRLEQTELATILLVAWAIREPGILDPSSSRGLAASLPLGSQQITDSMVWALTETLKSDWALEMAKSTTV 381
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7713.15386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J884_9PHAE1.240e-11257.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7713contigH-elongata_contig7713:2005..10262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_001310.1
Exons9
Model size2931
Cds size1317
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.7908797-UTR-H-elongata_contig7713:2004..20441622931175.7908797-UTR-H-elongata_contig7713:2004..2044Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7713 2005..2044 +
1691679729.3085923-UTR-H-elongata_contig7713:2004..20441691679729.3085923-UTR-H-elongata_contig7713:2004..2044Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7713 2005..2044 +
1622931176.013783-UTR-H-elongata_contig7713:8688..102621622931176.013783-UTR-H-elongata_contig7713:8688..10262Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7713 8689..10262 +
1691679729.4174483-UTR-H-elongata_contig7713:8688..102621691679729.4174483-UTR-H-elongata_contig7713:8688..10262Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7713 8689..10262 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.8094196-CDS-H-elongata_contig7713:2044..22951622931175.8094196-CDS-H-elongata_contig7713:2044..2295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 2045..2295 +
1691679729.3181105-CDS-H-elongata_contig7713:2044..22951691679729.3181105-CDS-H-elongata_contig7713:2044..2295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 2045..2295 +
1622931175.8249226-CDS-H-elongata_contig7713:4358..44491622931175.8249226-CDS-H-elongata_contig7713:4358..4449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 4359..4449 +
1691679729.3272858-CDS-H-elongata_contig7713:4358..44491691679729.3272858-CDS-H-elongata_contig7713:4358..4449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 4359..4449 +
1622931175.8442495-CDS-H-elongata_contig7713:4794..48771622931175.8442495-CDS-H-elongata_contig7713:4794..4877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 4795..4877 +
1691679729.338715-CDS-H-elongata_contig7713:4794..48771691679729.338715-CDS-H-elongata_contig7713:4794..4877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 4795..4877 +
1622931175.8721762-CDS-H-elongata_contig7713:5219..54031622931175.8721762-CDS-H-elongata_contig7713:5219..5403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 5220..5403 +
1691679729.3573186-CDS-H-elongata_contig7713:5219..54031691679729.3573186-CDS-H-elongata_contig7713:5219..5403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 5220..5403 +
1622931175.8927236-CDS-H-elongata_contig7713:5897..59931622931175.8927236-CDS-H-elongata_contig7713:5897..5993Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 5898..5993 +
1691679729.3670685-CDS-H-elongata_contig7713:5897..59931691679729.3670685-CDS-H-elongata_contig7713:5897..5993Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 5898..5993 +
1622931175.9153883-CDS-H-elongata_contig7713:6969..70291622931175.9153883-CDS-H-elongata_contig7713:6969..7029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 6970..7029 +
1691679729.3775952-CDS-H-elongata_contig7713:6969..70291691679729.3775952-CDS-H-elongata_contig7713:6969..7029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 6970..7029 +
1622931175.9455326-CDS-H-elongata_contig7713:7364..75411622931175.9455326-CDS-H-elongata_contig7713:7364..7541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 7365..7541 +
1691679729.3855264-CDS-H-elongata_contig7713:7364..75411691679729.3855264-CDS-H-elongata_contig7713:7364..7541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 7365..7541 +
1622931175.9695296-CDS-H-elongata_contig7713:7988..81141622931175.9695296-CDS-H-elongata_contig7713:7988..8114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 7989..8114 +
1691679729.3941414-CDS-H-elongata_contig7713:7988..81141691679729.3941414-CDS-H-elongata_contig7713:7988..8114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 7989..8114 +
1622931175.990651-CDS-H-elongata_contig7713:8439..86881622931175.990651-CDS-H-elongata_contig7713:8439..8688Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 8440..8688 +
1691679729.4043584-CDS-H-elongata_contig7713:8439..86881691679729.4043584-CDS-H-elongata_contig7713:8439..8688Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7713 8440..8688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7713.15386.1prot_H-elongata_contig7713.15386.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7713 2045..8688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7713.15386.1

>prot_H-elongata_contig7713.15386.1 ID=prot_H-elongata_contig7713.15386.1|Name=mRNA_H-elongata_contig7713.15386.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=439bp
MNSTRCFYANTAGYMPSAAACAMVTLCCGIVSDVKGDGGSRRASCSGEPD
RRAGVRRKRDIIDPVSPCAKFNSLQWRMSYASRKEECNALDSCVFIGRAI
TGACASRDPSLLLRRGSSKNLPNVPLVLPEKDAEERKAALQRHHAAKKME
ETIDELETEFQKEKDEQLAARRFQELMDPLDVEEATQERALAILREEGMA
ALQVFVQSQLANAAAEELRCQKASTKAFAKDFLIQVLQNEELPGHFGKML
RVIFQDPSLATGVRQLIYAAISLDHTFTNSFQLTRNLVTWLLTGTDWMDE
QALGLCVYLVGLPETELAASWLVAWAISKPGILDLPASKAVAQSLPLGSQ
EVTKALTTACASALQSEWAQELAKATTLTALDMLQRSANKNGTKQSHPTE
AFHVATEGDEAEDRPPSATDVVRPQQDSLGGNEAGRRL*
back to top

mRNA from alignment at H-elongata_contig7713:2005..10262+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7713.15386.1 ID=mRNA_H-elongata_contig7713.15386.1|Name=mRNA_H-elongata_contig7713.15386.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=8258bp|location=Sequence derived from alignment at H-elongata_contig7713:2005..10262+ (Himanthalia elongata Himel1 dioecious)
GGCACAGCTGTCGGAGTCCAAGGTGATTCCGCGGACGGGGATGAATTCTA
CACGATGTTTTTACGCCAATACAGCTGGATACATGCCGTCGGCGGCAGCA
TGTGCTATGGTCACCTTGTGCTGTGGCATTGTGTCCGACGTAAAGGGCGA
CGGCGGAAGCCGACGTGCTTCGTGCTCAGGCGAACCAGACCGCCGTGCTG
GCGTTAGAAGGAAGCGAGATATTATAGATCCAGTCAGTCCGTGCGCGAAG
TTCAATTCTCTCCAGTGGAGGATGAGCTATGCTAGCAGGAAGTGAGAGCC
GCGGGTGCAATTTACTCGCAAGTCGCACTTTTTCGCTCGTTGGCAGCTCA
CCGCCGGAGTTCGCCCCTTTTTATCAATTTGCATTAGACCGCGCAAACCG
GCAACTGGATTTCAACTTATATACAAGTATTGAATTTAGAAAAAATAAAA
TAAATAGATCGAGTTCCATAGAAGTTAACCTACCAAGTACTTTATACTAC
AACACAGAAAGCAAATTGCCTCCCTGTTTTCCTCCACGAGAATAGAACTG
TTTCCCTTTGTTGATGAGAGCCCTGGACATGGGTTGGCGGCAAAATATTC
AAAGTGAATCGAGGTGTTGCGGTGTTGCTCTAGAGTAGGAAGGTATTACT
AACTGTTTTGATATCAATGGCTTTTTTGGCTTTTTTTTTGAGTGTTGTAT
TCGTCCCTTGTCGAGGTCGATTGATCGATTTAATGCTCACCCTAAGCTGA
TTTTCAAAATCCAGCCCGTCGTCACAAGGTAGAAAAAAACACCACCCAGA
AGGAGAAAAACGTTCAACGCACTCTCCAAATACGTATAAGCGGGAATGAC
AATGGTCCATAATGCTAATATCCAGCCTGCAGATAGCGCTTAAGACCTTT
CACAGGGTAATCCTTCGACAGTGGCGCCGCATGGGGCCGAAACTGCTCTA
ATCATGACGCCGGTACCCCCGACGTCAATGTTTCAGGGCGAAGGTAGCAA
ACACAATATCCGATGACAACACCCTCAAACGGGGGGGGGGGGGGGTCGGG
ACACCCCGGCGCTTATGCCTCCTTACGGGTAAAAGCCGGTTTTACGCCGA
TGACCCCCGATGACGCAANNNNNNNNNNCCCCCAACTTGTATTTTCAGGG
GGGAAGGGAAAAAAACAAAAAACCCGTAAACCCCCCCCCGGGGGGGGGGG
GGGGGGGGGTTCGGGACACACCGGCGCTTATGCCTCCTTACGGGTCAAAG
CCGGTTTTACGCCGATGACCCCCGATGACGCAAATTAGATGAAGTAAATA
ATAGGACATGAAGACATTGTCGTCACTCTTGGATTTGAAATTTATGCGCG
AACGTAGCTCCTGGTCTTCGCTCGTGGTCAGCAGCGGAACAAAGATGAAG
AAAACAAATATGCCGCGGTATTTACACTAATTAATAATATAATTACGCGA
ACGTGGCTACGACAAAGAAAAGACACAAAACGAACGGAAAAAGGGATTTT
CGACTCTCATAATCCAACGAGGACAAGGGGAAAAAGTATTTCCCTGTTCA
GCTGATCACGAGCAGAAAACAACCAAATCCGGTTGATCTTCTGCTAAATG
TGTGACCAACAATAACAACAACATCCTTCATCCTCCTTTCTCCAAGGGCA
CATCGGAGGGTTCAGAGGAATGAGTCAAGAATCAGCATCCAATTCCAGCT
CCTGATTCATCAGTTGATTGTTATTCAAATTATTGACTGCTACTGCTACT
GGAGCAGCGTAGACCCTGTAGCTATTATCCATATATTTTACCGTCGTGAC
GCGGATAGGATTTTTCCTGTGCGGGTGGACCAAACAATCGGTAAGTTTTT
GTCACGATTTCCGATCCCTGGAGTGTCATCAATATGCCACCCGGTTACAT
TCGTACCTATTTCGAGACCACCAGCGGGGTCTTGACTTTAGATAAGTTTA
CTACAGTTGAGTAGGGTTTTGTCACCTGAATCATTCAGTTCCAAGAATAA
GACGCCGGGAGATGGAAATAGAAATACACCATCGACCAGCTATAGCACAA
AAGAACATATTCACATTACGATTAAATAGTCTATTTCGCTTACAACCTTT
CTGACAAGGTATGAGCACGAGGAGCTGCTCTACGGCAAGGGATTGTCCCT
CCAAGCCTCGAAGTTCGGTTTCACCCTTGTGTTTCCCTCTGCTCGTGCTC
CTCCCTCTGCTACCCCCTACTCCTTACGGTCCAAATAGTCCGCTTCGGTT
GTCGACATCCCCCAGCACGATGCCTCTGATACACAACACAGTGCCGGTAT
AGAGTTGAACCCTTTTGACGTGCCCTACCGTTGCGTTTCCGGAACATCTT
GCAGGGAAGAGTGCAACGCCCTGGACTCGTGCGTATTCATCGGACGCGCA
ATCACCGGTGCCTGTGCTTCAAGGGATCCCTCCTTGTTGCTCAGAGTAAG
GCACGGGCAACGGTGTGTTACTAGGCGAAATATGGCAGCATCCAGCAGAA
ATAGTTCGTGAAACGACTGATATATTGTTGGAACAAGCTCGAGGATCTGT
ACATGTAACTAATTTATCGAAGTACTATATTATTGTGTACTCTTAACAAG
TGTTCGCAGTCAACGCGAGTTAAAGGTACGCGTATTTAGTTTCTGTCCAG
CAGTGATACTGGCAATTCAGTATGCGACGGCTCTCCGCCCAAGCGTTGCG
TGGCCCTGAATCAGCTCTTGTCACGCTTATAACGTGATTTCAAGTCGTGA
TCGCCCCCGCCTGTCTGGAACAATCCTGGCCGCCGAGCAGCGGGGCTCAT
CGAAGAATCTCCCCAACGTGCCGCTGGTCCTACCAGAGAAAGACGCGGAG
GAAAGAAAAGCCGCTCTTCAAAGGTAACCGATCTCCCCGCCCCGTGCCTC
TGGATACAGCAGCAGTACGTCGTGAGTGCCGGCTGGTCTGGTCATTTTTC
GTGATTTCTATATATACTTCATATTTATATAAAGTGTGGATGTTCGTTCG
GAGGCTTGGAATGAGTTCATATGGTTTAAATAATAGTGTCGGAAAAGAGC
AGCTTGTTCTGTTTCCGGCGTGTTTTCTTTAGGAGTGGTGGTGCCTCTTT
CTCTTATATGGCACTGCAAGGAGGTATCGCTGGTCCCATCCGCCACGATA
CCACGGTGTTGCAGCTCTGGTGGTCGCTGACGCAAACTGGGGCGCTTCGT
TGTCTCGCGGCGAAGGCATCACGCGGCGAAGAAGATGGAGGAGACCATCG
ACGAGCTCGAGACGGAGTTCCAAAAGGAGAAGGACGAGCAGCTCGCTGCC
AGGAGGTTTCAGGAGCTGATGGACCCGCTGGACGTCGAGGAGGCTACCCA
AGAAAGGGCTCTCGCCATCCTCAGAGAGGAGGGGATGGCTGCGTTGCAGG
TGTGGTAGGGCGAAGGCGGGTGCTTGAGAGATAATAGTCGCCAGCCGCCG
CGCCGCTATCACTGACTGTGTACGTGGGTGTGTACGGGATATTCGGGGAG
AACTGGCACTGGCCAGGTGGAATAATTCCCCCGCTTCCCCCTTTCGCGTG
GTCGACTGCGGTCTGTAATAGGATGGTGCTAGTTTTTAGTTGAAACGCAC
CAACGTACCAATGCTTTGGGTGAAAGCAGGCATGGCGGTTTGCTTCTGTA
GCGATTGCGGGTGTAAAAAGCGGTGGAAATCGCTTCAGGTTGAATAGCCT
CCCTTTTGTTTTACCTTTCCGCCATCGAATGTGTGCCTTCATGGTGGTAC
AACCCTTATTTCGTCGTACCTTTCCCAGCCTTCCAATTGATGTATTCATT
TTTTTTTTCAACATACATTTTCCTCCCCCCATTTTCTGAGCTCGCAAATC
TCGCCTCTCAAGCAAACACCTTGTCGGTTGACCGCCGCCTCAGGTTTTCG
TACAAAGCCAGCTGGCCAACGCCGCGGCGGAGGAGCTCCGGTGTCAGAAG
GCTTCGACGAAGGCTTTCGCCAAGGACTTTCTCATCCAGGCATGAAAAGA
AGGGATGCAACACGATGCGCCCACGAGTTCCCGATAATCGTTTGCCTGTG
CTGTTAATGGGGATACGAGTACAACACGTGATGGGGATGTCGACCCGACC
TGACCTTGTCCAGTCCATCGCTGATGTGTCGACGTACCCCACTTCTATTT
GGGGGGAACTCCATATTTACCCGCGGCGTTTTTTTGTTTGTCATTTTTCC
TTTTAAAGTTTGTACTCAATTCAACCCCTCGGAACATCCACACCACCTTC
TTAGCGTCACCGTCGACGAAATCCATCATCCAGACAGCCAACCTTCGTCA
GGTTCGAGTGTGTACAGATCTAGCTGTTGGCATAAAATCTTCACGCATGG
GATTAATCGGTTTCCCCAACGACAATTGAATCGGGTCAACTATCATAATG
TTGGAGAGAAGCCCGCTGTTATGACGGACACTTATACTAACACGGACACG
GACACATCCCGCTGGGCGGAGCGGGGGGTAAGGTTTTTGTTGCCTCGCCC
GCCACGCACTCCGATCTTACCTTGTTATTTGGTTGAGTGGTGCTAGTTGA
TTTCCAAGAGGGCGGTACAGTGCGATGGCGCGCCGCCGTCTATCAGATCT
CCTGGCTTCGACTTGAGCTTTCCCCTCACAGCAGCCCTTCGGATGGTACC
AAACGTCTACAAATGTTAGATACAAGACGAGGGATTTTATTTCCTCTCCA
AGATCAAAACGACACCCCGATATTATACTCAAGTGCGGTCCTCGTTTGGT
TACCTCAGATTGAGAGGAGGTTAGTTACTCTTACGGACGAACGAAATGCT
ATCAATCTCCATTCGGTAAAAGCTTCATGGATCACCCCTTTCGATGTTGC
CGCGCTCGGCGATGTGACACGCTGAACCTAATCTGCCCAGTAATATCAAT
TGCATTTGTTTTATTTTTGTTGTTGCCTATATTGTACCTTTCCCGAAATG
CCGAACGCCTCGCAGGTGTTACAGAACGAAGAACTCCCAGGGCACTTCGG
CAAGATGCTTAGGGTTATATTCCAGGCGAGAATATGGCAGGCTTAGCTCG
GTAGTGTGTTATCCAACCTTCGTGCGAGGAAAGAAAGCAGAAGGAGCTCG
CGAAGGGGGAGGGGCAACGAAAGAAAAACTCATTCAATCTCTGTGTGAGG
GTATTTCTTCCAGGCGAATGCGACTGCCTCCTTGGAACTCCCAAATTAAT
GTATTCATGCACTAGCATGCATTTTCCTGTCAGCGACGACCACATTGCAA
CTCCCAAATGCCTTCGCCCACAGAACATCGCACAGTGCTGCGTAAACTTC
AGTGCTACTTCAAAGCATTTCTTGCCCTAGCTGAGATTATGCTTAATTCC
TTTCGAACAGGACCCATCGCTGGCCACAGGCGTTCGGCAGTTGATCTACG
CCGCCATTTCCCTGGATCACACGTTCACGAACTCCTTCCAACTGACTCGG
AATTTGGTGACGTGGCTACTGACGGGGACAGACTGGATGGACGAGCAGGC
GCTTGGGCTGTGTGTCTACCTCGTCGGGTTGCCGGAGGTTGGACTGCGAG
ATCTGTCGTAACGCGCGCACCGTGTCGTGTCCTCCCTCAAGCCTAAGTTA
GTGGGAGTCTAGTGTGTACGCATAAGCTGGGTGGCTGCTCCGGTAAATAT
CGGTGGCTCGAGGGGTTAGGAAATTACGATGAGAAAGAACGTGGGGCCGA
CGGTAACGGCCTTAGACGCTTGGTGTATTATGGTTGTACTGTTTGACCCC
GGAATATGCGCCAGTTGTGGACGGCCACCTTGGACGACAGGAAGCTGTAT
ACATTGGACTTCCACGTGACATCGCGGCATTGGTGACAAGCTATGCTGCT
TACAGCATCACACAGTAACGTATACTGAAAATAGGTGTGTACCCCTCTGA
CTTCCCTGCTGTTCCCTACGTCTACGAAAGCTCTTCAGACGTGTTGCAAC
GATCTGCTGCATTTGTTTCTCTCATGACGCTCAGACGGAACTCGCGGCTA
GTTGGCTTGTCGCGTGGGCGATTAGCAAGCCCGGTATATTGGACCTTCCT
GCCTCTAAAGCCGTGGCGCAAAGCCTTCCATTAGGGTCCCAGGAAGTCAC
GAAAGCACTGGTGAGCATGGCTTGTATCGGCACTAAAAAATGCCAGCTGG
GAGGGACTCTATTCGTCCTTCGTGGGACACGTCGTTGGCTTTTTTTTACA
AAAGATTTTCCGCCTCGTTTAATGTTGCTTTTGAGGGGGGACGGGGCAAG
TTAACCCTTCCGGAATTGGATTTCAAGTTTTATATTGAATTTAGTATGTA
AAAAAACAGATCAAGTTTCATAGGGGTTAATACGCCATGGGCTGAACGAT
ACAGCGATACACTCAAAAACGAAATGTGTGCAATGCCAGATGATGATGAC
TAGGGTTTCGCCTTTGTTCTGCTTCGCGCGTGTAGACCACGGCATGTGCT
AGCGCCCTCCAGTCGGAATGGGCCCAAGAGCTCGCCAAAGCAACTACCTT
GACCGCCTTGGACATGCTCCAGCGTTCGGCAAATAAGAATGGAACCAAGC
AGTCACATCCTACCGAAGCGTTTCATGTCGCGACAGAGGGCGATGAAGCC
GAAGATCGCCCACCGTCGGCTACAGACGTTGTTCGTCCTCAGCAAGATTC
TCTCGGGGGAAACGAGGCGGGGAGGCGTTTGTGAAAAGGGTTGCGGGGAA
GGAAGTTATGAAGTAGCGTCTGATAACATGGGAATTGAAAATATACCAAC
CATAATACTAGTGCCTGAATGAAAATGGGAATATGAAGGGGCAAATATCC
CCTATCTAATGAAACTAGGCAGAGAAGAAAGGTTCAACCAATTTTCTGAT
ACTAACAAAACGTTTCTAAGGAAGGGTGTTGACCGGAAATTTCTTGGTCA
ATAGTTAGCGTCGATTTGTGGCAAAAACGTCTCATTGGGATAAGGTATGT
TCGGTCTGGAGGGGGCTTATCAGAATCTTCGTAAACGTATTAGGCTCTTA
TCTAAAACAACACGGTCAGAAATTGCAAGAAGGTGTTACGATGTGTTACT
TGTATACATTTTTGTAATGTTTCGATTTGGAATAGCTGAAATGTTTCTAG
ATGAACTGAATTTTAAGCTTTATTATACATTTAGTATGTAAAAGACAGAT
CGAGTTCCCTAGGTGTTAACGAGCACATTGTGTGATAAGCAGCATCTACC
ACCGCTACGCGTAACGTAGTTTTGAGCCACTCACTGCGAGTAGCTCTAAT
AATCACCACCATCACCGCGGAAACCAACCCCAGGTCCTTGTGCATTAAAA
AAAAAAATCTTGATTGCTAAAATGTCTCAAAATCACTCCTGCATGCATTT
CGATTTTGGCACCTCTTTCCGGTTGTTAGACACGGCAATGCAGGTTTTGG
TCGGGATAAAAATAAAATAAAATGTTCGTGGTGCCGCCGTACTTTTGTGC
AGGCATAAATATTTTTTTGGATAATATATGGTAGATAATATATAGTAGAT
AATATATGGTAGATAATATATAGTAGATAATATATAGTAGATAATATATG
GTAGATAATATATAGCAGATAATATATGGTAGATAAGATATAGTAGATAA
GATATAGTAGATAAGATATAGTAGATAATATATTTTTATTAAAAAAACTG
GTAGATAAGATATATGGTAGTAGATAAGATATAGTAGATAGTATATGGTA
GATCATATATAGTAGATAATATATGGTAGGTAATATATAGTAGATAATAT
ATAGTAGATAATATATGGTCCGTAGAGACGGGTAGGAGGGGGGTGGGGGG
TGTAGCTCCCACCACCATATACGACGACTTGGTGATAATGTACTGCTGGT
GCGCAACCGCTACGACGCGCAAATAAAAGACATGTTAGCAATGTTACGCC
TTACCCCCCAGTTGATGTCGCGCAAAGGCTCCCCGGAATTTCACCGGTAC
TGCTGCTCCAAAGTACCGGTACTGTTTTATTATTTTTATATTAAAAAAAA
AACTTAAACTCAGTGACTGATTGAATTGACTGAATTCTCACAATAAGATG
ACTGATGTCAAAATTCAGCCCGTGGTCACAAGGTAGAAAAAATGCCATCC
GGAAGAAAAAAACGTTTAACGTACTCTCCAATACAAAAAGAAACGACAAT
GGTGCATAATACTAATATCTCAACGCTTGACTGTCTGCTGCCCCCCCCCA
GTGACTGGTAGGGATATGCTTAGCGACTCGCGTACGGTATCGGTAGTCGT
GCGGTCTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7713:2005..10262+

>mRNA_H-elongata_contig7713.15386.1 ID=mRNA_H-elongata_contig7713.15386.1|Name=mRNA_H-elongata_contig7713.15386.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2634bp|location=Sequence derived from alignment at H-elongata_contig7713:2005..10262+ (Himanthalia elongata Himel1 dioecious)
ATGAATTCTACACGATGTTTTTACGCCAATACAGCTGGATACATGCCGTC
GGCGGCAGCATGTGCTATGGTCACCTTGTGCTGTGGCATTGTGTCCGACG
TAAAGGGCGACGGCGGAAGCCGACGTGCTTCGTGCTCAGGCGAACCAGAC
CGCCGTGCTGGCGTTAGAAGGAAGCGAGATATTATAGATCCAGTCAGTCC
GTGCGCGAAGTTCAATTCTCTCCAGTGGAGGATGAGCTATGCTAGCAGGA
AATGAATTCTACACGATGTTTTTACGCCAATACAGCTGGATACATGCCGT
CGGCGGCAGCATGTGCTATGGTCACCTTGTGCTGTGGCATTGTGTCCGAC
GTAAAGGGCGACGGCGGAAGCCGACGTGCTTCGTGCTCAGGCGAACCAGA
CCGCCGTGCTGGCGTTAGAAGGAAGCGAGATATTATAGATCCAGTCAGTC
CGTGCGCGAAGTTCAATTCTCTCCAGTGGAGGATGAGCTATGCTAGCAGG
AAGGAAGAGTGCAACGCCCTGGACTCGTGCGTATTCATCGGACGCGCAAT
CACCGGTGCCTGTGCTTCAAGGGATCCCTCCTTGTTGCTCAGAGGAAGAG
TGCAACGCCCTGGACTCGTGCGTATTCATCGGACGCGCAATCACCGGTGC
CTGTGCTTCAAGGGATCCCTCCTTGTTGCTCAGACGGGGCTCATCGAAGA
ATCTCCCCAACGTGCCGCTGGTCCTACCAGAGAAAGACGCGGAGGAAAGA
AAAGCCGCTCTTCAAAGCGGGGCTCATCGAAGAATCTCCCCAACGTGCCG
CTGGTCCTACCAGAGAAAGACGCGGAGGAAAGAAAAGCCGCTCTTCAAAG
GCATCACGCGGCGAAGAAGATGGAGGAGACCATCGACGAGCTCGAGACGG
AGTTCCAAAAGGAGAAGGACGAGCAGCTCGCTGCCAGGAGGTTTCAGGAG
CTGATGGACCCGCTGGACGTCGAGGAGGCTACCCAAGAAAGGGCTCTCGC
CATCCTCAGAGAGGAGGGGATGGCTGCGTTGCAGGCATCACGCGGCGAAG
AAGATGGAGGAGACCATCGACGAGCTCGAGACGGAGTTCCAAAAGGAGAA
GGACGAGCAGCTCGCTGCCAGGAGGTTTCAGGAGCTGATGGACCCGCTGG
ACGTCGAGGAGGCTACCCAAGAAAGGGCTCTCGCCATCCTCAGAGAGGAG
GGGATGGCTGCGTTGCAGGTTTTCGTACAAAGCCAGCTGGCCAACGCCGC
GGCGGAGGAGCTCCGGTGTCAGAAGGCTTCGACGAAGGCTTTCGCCAAGG
ACTTTCTCATCCAGGTTTTCGTACAAAGCCAGCTGGCCAACGCCGCGGCG
GAGGAGCTCCGGTGTCAGAAGGCTTCGACGAAGGCTTTCGCCAAGGACTT
TCTCATCCAGGTGTTACAGAACGAAGAACTCCCAGGGCACTTCGGCAAGA
TGCTTAGGGTTATATTCCAGGTGTTACAGAACGAAGAACTCCCAGGGCAC
TTCGGCAAGATGCTTAGGGTTATATTCCAGGACCCATCGCTGGCCACAGG
CGTTCGGCAGTTGATCTACGCCGCCATTTCCCTGGATCACACGTTCACGA
ACTCCTTCCAACTGACTCGGAATTTGGTGACGTGGCTACTGACGGGGACA
GACTGGATGGACGAGCAGGCGCTTGGGCTGTGTGTCTACCTCGTCGGGTT
GCCGGAGGACCCATCGCTGGCCACAGGCGTTCGGCAGTTGATCTACGCCG
CCATTTCCCTGGATCACACGTTCACGAACTCCTTCCAACTGACTCGGAAT
TTGGTGACGTGGCTACTGACGGGGACAGACTGGATGGACGAGCAGGCGCT
TGGGCTGTGTGTCTACCTCGTCGGGTTGCCGGAGACGGAACTCGCGGCTA
GTTGGCTTGTCGCGTGGGCGATTAGCAAGCCCGGTATATTGGACCTTCCT
GCCTCTAAAGCCGTGGCGCAAAGCCTTCCATTAGGGTCCCAGGAAGTCAC
GAAAGCACTGACGGAACTCGCGGCTAGTTGGCTTGTCGCGTGGGCGATTA
GCAAGCCCGGTATATTGGACCTTCCTGCCTCTAAAGCCGTGGCGCAAAGC
CTTCCATTAGGGTCCCAGGAAGTCACGAAAGCACTGACCACGGCATGTGC
TAGCGCCCTCCAGTCGGAATGGGCCCAAGAGCTCGCCAAAGCAACTACCT
TGACCGCCTTGGACATGCTCCAGCGTTCGGCAAATAAGAATGGAACCAAG
CAGTCACATCCTACCGAAGCGTTTCATGTCGCGACAGAGGGCGATGAAGC
CGAAGATCGCCCACCGTCGGCTACAGACGTTGTTCGTCCTCAGCAAGATT
CTCTCGGGGGAAACGAGGCGGGGAGGCGTTTGTGAACCACGGCATGTGCT
AGCGCCCTCCAGTCGGAATGGGCCCAAGAGCTCGCCAAAGCAACTACCTT
GACCGCCTTGGACATGCTCCAGCGTTCGGCAAATAAGAATGGAACCAAGC
AGTCACATCCTACCGAAGCGTTTCATGTCGCGACAGAGGGCGATGAAGCC
GAAGATCGCCCACCGTCGGCTACAGACGTTGTTCGTCCTCAGCAAGATTC
TCTCGGGGGAAACGAGGCGGGGAGGCGTTTGTGA
back to top