mRNA_H-elongata_contig77115.15385.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77115.15385.1
Unique NamemRNA_H-elongata_contig77115.15385.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77115.15385.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 6.590e-17
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 EQAIRGFPACWEYWSDLGWCYHAEGKQAAALKAYTRADDL 120
            +QAIRG P  W YWSDLGWCYHAEGKQAAALKAYTRA+DL
Sbjct:  657 QQAIRGCPTSWSYWSDLGWCYHAEGKQAAALKAYTRAEDL 696
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BLAST of mRNA_H-elongata_contig77115.15385.1 vs. uniprot
Match: A0A6H5JG00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG00_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 6.600e-17
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 EQAIRGFPACWEYWSDLGWCYHAEGKQAAALKAYTRADDL 120
            +QAIRG P  W YWSDLGWCYHAEGKQAAALKAYTRA+DL
Sbjct:  123 QQAIRGCPTSWSYWSDLGWCYHAEGKQAAALKAYTRAEDL 162
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BLAST of mRNA_H-elongata_contig77115.15385.1 vs. uniprot
Match: A0A836CP95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP95_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.080e-8
Identity = 23/37 (62.16%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:    1 EQAIRGFPACWEYWSDLGWCYHAEGKQAAALKAYTRA 111
            +QA+ G P  W  W DLGW YH + KQAAALKAY RA
Sbjct:  622 QQALAGAPRDWRGWGDLGWVYHRQAKQAAALKAYARA 658
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77115.15385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G059_ECTSI6.590e-1785.00Similar to Tetratricopeptide repeat protein 37 (TP... [more]
A0A6H5JG00_9PHAE6.600e-1785.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CP95_9STRA8.080e-862.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77115contigH-elongata_contig77115:745..864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue3.1e-14
Seed eggNOG ortholog2880.D7G059
Preferred nameTTC37
KEGG koko:K12600
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019222,GO:0019439,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0035327,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
EggNOG OGsKOG1127@1,KOG1127@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.7411535-CDS-H-elongata_contig77115:744..8641622931175.7411535-CDS-H-elongata_contig77115:744..864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77115 745..864 -
1691679729.2956161-CDS-H-elongata_contig77115:744..8641691679729.2956161-CDS-H-elongata_contig77115:744..864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77115 745..864 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77115.15385.1prot_H-elongata_contig77115.15385.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77115 745..864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77115.15385.1

>prot_H-elongata_contig77115.15385.1 ID=prot_H-elongata_contig77115.15385.1|Name=mRNA_H-elongata_contig77115.15385.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
EQAIRGFPACWEYWSDLGWCYHAEGKQAAALKAYTRADDL
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mRNA from alignment at H-elongata_contig77115:745..864-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77115.15385.1 ID=mRNA_H-elongata_contig77115.15385.1|Name=mRNA_H-elongata_contig77115.15385.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig77115:745..864- (Himanthalia elongata Himel1 dioecious)
GAGCAGGCCATCCGAGGGTTTCCAGCTTGTTGGGAGTACTGGTCGGATCT
GGGCTGGTGCTATCACGCGGAGGGGAAGCAAGCCGCGGCGCTGAAGGCCT
ACACGAGGGCCGACGACCTA
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Coding sequence (CDS) from alignment at H-elongata_contig77115:745..864-

>mRNA_H-elongata_contig77115.15385.1 ID=mRNA_H-elongata_contig77115.15385.1|Name=mRNA_H-elongata_contig77115.15385.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig77115:745..864- (Himanthalia elongata Himel1 dioecious)
GAGCAGGCCATCCGAGGGTTTCCAGCTTGTTGGGAGTACTGGTCGGATCT
GGGCTGGTGCTATCACGCGGAGGGGAAGCAAGCCGCGGCGCTGAAGGCCT
ACACGAGGGCCGACGACCTAGAGCAGGCCATCCGAGGGTTTCCAGCTTGT
TGGGAGTACTGGTCGGATCTGGGCTGGTGCTATCACGCGGAGGGGAAGCA
AGCCGCGGCGCTGAAGGCCTACACGAGGGCCGACGACCTA
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