mRNA_H-elongata_contig7709.15383.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 157 bits (396), Expect = 7.610e-42 Identity = 78/129 (60.47%), Postives = 87/129 (67.44%), Query Frame = 1
Query: 1 MTWCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEEHSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGVQMYPDASTELW 387
+TWCGKVYS GQV HDPERL GLA +RRP T GELM+FLQA NW+ LPRMAEVV P R LE+H G+ TKR A N+AIA A TP LV AW AQ VA + L HP V M+PDAS E W
Sbjct: 953 ITWCGKVYSEGQVEHDPERLSGLATMRRPETAGELMQFLQAVNWLRTSLPRMAEVVWPLRVFLEQHLVGAKSRTKRVAENRAIAADALTPALVEAWTAAQDLVARAVALSHPSPGCAVLMFPDASDEHW 1081
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A6H5K9E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E0_9PHAE) HSP 1 Score: 155 bits (392), Expect = 2.420e-41 Identity = 73/128 (57.03%), Postives = 91/128 (71.09%), Query Frame = 1
Query: 1 MTWCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEEHSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGVQMYPDASTEL 384
+ WCGKVYSGGQV HDP RL GLA++RRP T GELM+ LQA NW+ LPR+AEVV P R++LEEH A + TKR ASN+AI + AWT + +AW AQ VA+ + L HP E + V M+PDAS +
Sbjct: 781 IKWCGKVYSGGQVAHDPARLQGLADMRRPETAGELMQVLQAVNWLRTSLPRLAEVVEPLRRLLEEHMASAPRRTKRIASNRAIKSEAWTAGMAKAWTSAQDLVAHAVALSHPKEGFAVLMFPDASVSI 908
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE) HSP 1 Score: 137 bits (345), Expect = 5.600e-35 Identity = 67/129 (51.94%), Postives = 85/129 (65.89%), Query Frame = 1
Query: 1 MTWCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEEHSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGVQMYPDASTELW 387
+ WCGKVYSGGQV DPERL GL ++RRP T G+LM+FLQA W+ L R+AEV+ P R +LE + A + TK A N+AI AWT +V AW AQ VA+ + L HP + + V M+PDAS E W
Sbjct: 606 IRWCGKVYSGGQVASDPERLQGLTDMRRPETAGKLMQFLQAVKWLRTSLSRLAEVMEPVRTLLEVNMASAPRQTKSIAPNRAIKCEAWTAGMVEAWISAQDLVAHAVALSHPKDGFAVLMFPDASEEHW 734
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A6A3L091_9STRA (RNA-directed DNA polymerase n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L091_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 2.210e-16 Identity = 48/131 (36.64%), Postives = 66/131 (50.38%), Query Frame = 1
Query: 1 MTWCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEEHSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGVQMYPDASTELWEV 393
+ WCGK+ SG + HDPERL LAN+ P TV L +FL A NW+ L A + AP + LE+ + KR N A W+P+L + ++ + L HP ED V + DAS + W V
Sbjct: 563 VLWCGKMVSGTDIQHDPERLSALANLPPPPTVAALQQFLCAVNWVRDSLIDYARIAAPLYECLEQQM---RVIGKR-NKNGLHAALEWSPELDACFREVKLLLLRAAPLAHPAEDAAVCLLTDASADGWSV 689
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A0G4J2M7_PLABS (Reverse transcriptase domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J2M7_PLABS) HSP 1 Score: 65.9 bits (159), Expect = 1.950e-10 Identity = 33/129 (25.58%), Postives = 63/129 (48.84%), Query Frame = 1
Query: 1 MTWCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEEHSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGVQMYPDASTELW 387
+ WCGK+YSG + HDPER+ L ++ P+TV +L + + A WM +P ++ P ++++ +N+ + T + +RA + + +A +P +D+ ++ DAS W
Sbjct: 59 LVWCGKIYSGNGIRHDPERIAALTSMPEPKTVKDLQQLMWAVGWMRTTIPDYPYIIEPLQEVVGR-------------ANEELKRTKSTFEKLRAVLVEHVQLA------YPKKDFQTCLFTDASEFAW 168
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: H3H8C5_PHYRM (RNA-directed DNA polymerase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8C5_PHYRM) HSP 1 Score: 67.0 bits (162), Expect = 2.480e-10 Identity = 40/129 (31.01%), Postives = 64/129 (49.61%), Query Frame = 1
Query: 7 WCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEE--HSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGVQMYPDASTELW 387
WCGK++SG + HDP R+ GL ++ P T +L +FL AA W+ + + V+ P +LE G TKR A+ ++ W A+ A+ +A T +L P + + ++ DAS W
Sbjct: 735 WCGKIFSGEGIAHDPARVSGLQSLPLPVTAADLQQFLCAAGWLRDSIMDYSRVMQPLHILLEAALQQVGR---TKRLAAGFTLS---WNDGDKAAFTTARNLLATTQMLHFPDDSASLCVFSDASERGW 857
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A6A4BBJ8_9STRA (Uncharacterized protein n=5 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4BBJ8_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 4.570e-10 Identity = 40/129 (31.01%), Postives = 63/129 (48.84%), Query Frame = 1
Query: 7 WCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEE--HSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGVQMYPDASTELW 387
WCGK++SG + HDP R+ GL + P T +L +FL AA W+ + + V+ P +LE G TKR A+ ++ W A+ A+ +A T +L P + + ++ DAS W
Sbjct: 108 WCGKIFSGEGIAHDPARVSGLQPLPLPVTAADLQQFLCAAGWLRDSIMDYSRVMQPLHILLEAALQQVGR---TKRLAAGFTLS---WNDDDKAAFTTARNLLATTQLLHFPDDSASLCVFSDASERGW 230
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A2P4Y2Z2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y2Z2_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 7.780e-10 Identity = 40/118 (33.90%), Postives = 57/118 (48.31%), Query Frame = 1
Query: 7 WCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEE--HSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGV 354
WCG+++SG V HDPERL GL + P T +L +FL A WM L + V+ P LE G TKR A+ AI WT A+ A+ + + L +P ++ +
Sbjct: 139 WCGRLFSGVGVRHDPERLSGLHQLPLPSTAADLQQFLCATGWMRDSLMDYSRVMQPLHDKLEAVLKVVGR---TKRLAAGAAIP---WTTADTNAFETARQLLTTSKTLHYPSQNASI 250
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A2P4WWE8_9STRA (RT_RNaseH domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWE8_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 1.780e-8 Identity = 43/137 (31.39%), Postives = 61/137 (44.53%), Query Frame = 1
Query: 7 WCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEE--HSAGSHICTKRFASNKAIANGAWTPKLVRAWNIAQI--------FVANTMVLLHPMEDYGVQMYPDASTELW 387
WCG+++SG V HDPERL GL + T +L +FL A WM L + V+ P LE G TKR A+ AI WT A+ A+ + + L +P ++ + + DAS W
Sbjct: 256 WCGQLFSGVGVRHDPERLSGLHQLPLTSTAADLQQFLCATGWMRGSLMDYSRVIQPLHDKLEAVLKVVGR---TKRLAAGAAIT---WTAADSTAFETARXXXXXXXXQLLTTSQTLHYPSQNASIVLMSDASDRGW 386
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Match: A0A225VC65_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VC65_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 4.160e-6 Identity = 36/131 (27.48%), Postives = 63/131 (48.09%), Query Frame = 1
Query: 1 MTWCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPRMAEVVAPFRQMLEEHSAGSHIC--TKRFASNKAIANGAWTPKLVRAWNIAQIFVANTMVLLHPMEDYGVQMYPDASTELW 387
+ WCG+V+SG + HDP R+ L + P T +L +FL AA WM + + A + LE A +C TK+ A+ + GA ++ A+ ++++ +L + + ++ DAS W
Sbjct: 106 IRWCGRVFSGVGIRHDPARIEALQALPLPVTAADLQQFLCAAGWMRVTIMDFARTMGLLHDKLE---AVLQVCGRTKKLAAGVTLEWGAAEQD---EFDGAKQLLSSSQLLYFRKDTAVIAVFSDASDLGW 230 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7709.15383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7709.15383.1 >prot_H-elongata_contig7709.15383.1 ID=prot_H-elongata_contig7709.15383.1|Name=mRNA_H-elongata_contig7709.15383.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp MTWCGKVYSGGQVTHDPERLCGLANIRRPRTVGELMRFLQAANWMWIFLPback to top mRNA from alignment at H-elongata_contig7709:5087..5479+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7709.15383.1 ID=mRNA_H-elongata_contig7709.15383.1|Name=mRNA_H-elongata_contig7709.15383.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig7709:5087..5479+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7709:5087..5479+ >mRNA_H-elongata_contig7709.15383.1 ID=mRNA_H-elongata_contig7709.15383.1|Name=mRNA_H-elongata_contig7709.15383.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig7709:5087..5479+ (Himanthalia elongata Himel1 dioecious)back to top |