mRNA_H-elongata_contig77021.15376.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77021.15376.1
Unique NamemRNA_H-elongata_contig77021.15376.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77021.15376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77021contigH-elongata_contig77021:1876..2789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size914
Cds size912
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.0141273-CDS-H-elongata_contig77021:1875..27871622931175.0141273-CDS-H-elongata_contig77021:1875..2787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77021 1876..2787 +
1691679729.0050926-CDS-H-elongata_contig77021:1875..27871691679729.0050926-CDS-H-elongata_contig77021:1875..2787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77021 1876..2787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77021.15376.1prot_H-elongata_contig77021.15376.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77021 1876..2787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77021.15376.1

>prot_H-elongata_contig77021.15376.1 ID=prot_H-elongata_contig77021.15376.1|Name=mRNA_H-elongata_contig77021.15376.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=304bp
GGKKAEYCAIHALEGMIDVATKRCANDGCFKRPSYGLAGSKKAEFCAVHA
LEGMINVHNKVCASDGCVKRLGYGVAGSKNADYCAMHALKGMVDIVIKRC
GARYAKHSRYSVVDSKTTKSCDVHGCGWRIDVAIKNCSSDGSCMSLGYDV
AGSQTMESYVGHGFEKMADVANTRCVSDGSCERLSYYLVDRIKQEYCTEH
AVNGIITVGKVDSGDGCHREKRCLFGGHDVLDSKKHCFNNGCCGSASDDT
AGGAMQEYCAEIASESMDASTAHNQSRTRKRMPETTGPGVSALQRERTAK
FTHN
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mRNA from alignment at H-elongata_contig77021:1876..2789+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77021.15376.1 ID=mRNA_H-elongata_contig77021.15376.1|Name=mRNA_H-elongata_contig77021.15376.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=914bp|location=Sequence derived from alignment at H-elongata_contig77021:1876..2789+ (Himanthalia elongata Himel1 dioecious)
GGAGGCAAGAAAGCGGAATACTGCGCAATACATGCTTTAGAGGGAATGAT
CGACGTTGCGACCAAGAGATGTGCTAACGATGGATGCTTTAAGCGTCCGA
GTTATGGCCTGGCTGGCAGCAAGAAAGCCGAATTTTGTGCGGTGCATGCT
TTGGAAGGAATGATCAACGTTCATAACAAGGTGTGTGCTAGCGATGGATG
CGTTAAGCGTCTAGGTTATGGCGTAGCCGGCAGCAAGAATGCGGACTATT
GTGCAATGCATGCTTTGAAAGGGATGGTCGACATTGTGATTAAGAGATGT
GGTGCTAGATACGCCAAGCATTCGCGTTATAGTGTTGTCGACAGCAAGAC
AACAAAAAGCTGCGACGTGCATGGTTGCGGTTGGAGGATCGACGTTGCGA
TCAAGAATTGTTCTAGCGATGGAAGCTGTATGTCACTGGGCTATGACGTT
GCCGGTAGTCAAACGATGGAGTCCTACGTGGGGCATGGTTTTGAAAAAAT
GGCTGACGTTGCAAACACGAGGTGCGTTAGCGATGGATCCTGTGAGCGAC
TGAGCTATTATCTAGTCGATAGGATCAAGCAGGAGTACTGTACCGAGCAT
GCTGTGAATGGAATTATCACCGTTGGGAAAGTGGATTCCGGCGATGGATG
CCATAGGGAGAAACGGTGTTTATTTGGCGGTCATGATGTTCTCGATTCCA
AGAAGCATTGCTTCAACAACGGATGCTGCGGGAGCGCAAGCGATGATACT
GCCGGTGGCGCGATGCAGGAGTATTGTGCTGAAATTGCGTCGGAGAGCAT
GGATGCTTCGACTGCCCACAATCAGTCGAGAACCAGGAAGCGAATGCCCG
AGACTACTGGACCAGGAGTATCTGCTTTGCAGAGAGAAAGAACAGCTAAG
TTTACACATAACGC
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Coding sequence (CDS) from alignment at H-elongata_contig77021:1876..2789+

>mRNA_H-elongata_contig77021.15376.1 ID=mRNA_H-elongata_contig77021.15376.1|Name=mRNA_H-elongata_contig77021.15376.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1824bp|location=Sequence derived from alignment at H-elongata_contig77021:1876..2789+ (Himanthalia elongata Himel1 dioecious)
GGAGGCAAGAAAGCGGAATACTGCGCAATACATGCTTTAGAGGGAATGAT
CGACGTTGCGACCAAGAGATGTGCTAACGATGGATGCTTTAAGCGTCCGA
GTTATGGCCTGGCTGGCAGCAAGAAAGCCGAATTTTGTGCGGTGCATGCT
TTGGAAGGAATGATCAACGTTCATAACAAGGTGTGTGCTAGCGATGGATG
CGTTAAGCGTCTAGGTTATGGCGTAGCCGGCAGCAAGAATGCGGACTATT
GTGCAATGCATGCTTTGAAAGGGATGGTCGACATTGTGATTAAGAGATGT
GGTGCTAGATACGCCAAGCATTCGCGTTATAGTGTTGTCGACAGCAAGAC
AACAAAAAGCTGCGACGTGCATGGTTGCGGTTGGAGGATCGACGTTGCGA
TCAAGAATTGTTCTAGCGATGGAAGCTGTATGTCACTGGGCTATGACGTT
GCCGGTAGTCAAACGATGGAGTCCTACGTGGGGCATGGTTTTGAAAAAAT
GGCTGACGTTGCAAACACGAGGTGCGTTAGCGATGGATCCTGTGAGCGAC
TGAGCTATTATCTAGTCGATAGGATCAAGCAGGAGTACTGTACCGAGCAT
GCTGTGAATGGAATTATCACCGTTGGGAAAGTGGATTCCGGCGATGGATG
CCATAGGGAGAAACGGTGTTTATTTGGCGGTCATGATGTTCTCGATTCCA
AGAAGCATTGCTTCAACAACGGATGCTGCGGGAGCGCAAGCGATGATACT
GCCGGTGGCGCGATGCAGGAGTATTGTGCTGAAATTGCGTCGGAGAGCAT
GGATGCTTCGACTGCCCACAATCAGTCGAGAACCAGGAAGCGAATGCCCG
AGACTACTGGACCAGGAGTATCTGCTTTGCAGAGAGAAAGAACAGCTAAG
TTTACACATAACGGAGGCAAGAAAGCGGAATACTGCGCAATACATGCTTT
AGAGGGAATGATCGACGTTGCGACCAAGAGATGTGCTAACGATGGATGCT
TTAAGCGTCCGAGTTATGGCCTGGCTGGCAGCAAGAAAGCCGAATTTTGT
GCGGTGCATGCTTTGGAAGGAATGATCAACGTTCATAACAAGGTGTGTGC
TAGCGATGGATGCGTTAAGCGTCTAGGTTATGGCGTAGCCGGCAGCAAGA
ATGCGGACTATTGTGCAATGCATGCTTTGAAAGGGATGGTCGACATTGTG
ATTAAGAGATGTGGTGCTAGATACGCCAAGCATTCGCGTTATAGTGTTGT
CGACAGCAAGACAACAAAAAGCTGCGACGTGCATGGTTGCGGTTGGAGGA
TCGACGTTGCGATCAAGAATTGTTCTAGCGATGGAAGCTGTATGTCACTG
GGCTATGACGTTGCCGGTAGTCAAACGATGGAGTCCTACGTGGGGCATGG
TTTTGAAAAAATGGCTGACGTTGCAAACACGAGGTGCGTTAGCGATGGAT
CCTGTGAGCGACTGAGCTATTATCTAGTCGATAGGATCAAGCAGGAGTAC
TGTACCGAGCATGCTGTGAATGGAATTATCACCGTTGGGAAAGTGGATTC
CGGCGATGGATGCCATAGGGAGAAACGGTGTTTATTTGGCGGTCATGATG
TTCTCGATTCCAAGAAGCATTGCTTCAACAACGGATGCTGCGGGAGCGCA
AGCGATGATACTGCCGGTGGCGCGATGCAGGAGTATTGTGCTGAAATTGC
GTCGGAGAGCATGGATGCTTCGACTGCCCACAATCAGTCGAGAACCAGGA
AGCGAATGCCCGAGACTACTGGACCAGGAGTATCTGCTTTGCAGAGAGAA
AGAACAGCTAAGTTTACACATAAC
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