mRNA_H-elongata_contig77.15372.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77.15372.1
Unique NamemRNA_H-elongata_contig77.15372.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: A0A6H5KIS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS6_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 6.260e-64
Identity = 130/308 (42.21%), Postives = 175/308 (56.82%), Query Frame = 1
Query:    1 IQAEVVELKAIGAIDESASAWAANCSTVRKSDGTVRVDQDFRGLNSRLKSQSGDLGALAHIFDGMGKMSCFSSCDLASGFL*LGIHAEDRYLTVFRDADGKLWQYVRFGFDLKTVPSAFVNYVRSRLMPVKSRGIRN*LDGIAILSRTITEHWPLLRATFKCLREGKLTVKLQKSKFFQPGLEIVGMVVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLEDPRFRRKQEEQMR---------AFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQ 897
            I+AE+ +L   G I +S S WAA C  V+K DGT+R+  D+R LN  L S SG LG +  IFDG+     F+  DLASGF  + I  +DRY T FRDADG LW++ R GF L  +P+AF   V+S L  +   G+ + LD I I S +  EH   L      L    L+V   K  F     E +GM++D  G  P PSK++A+ ++ RP TVEE+R  LG+T YLRQFV NY    AP++ +L +  F  K+  ++          AF++LRE L S  +LA PD    F+L TDAS  G GA + Q
Sbjct:   32 IRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLA--GVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCPFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQ 337          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: A0A6H5JQV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV6_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 9.360e-62
Identity = 130/308 (42.21%), Postives = 175/308 (56.82%), Query Frame = 1
Query:    1 IQAEVVELKAIGAIDESASAWAANCSTVRKSDGTVRVDQDFRGLNSRLKSQSGDLGALAHIFDGMGKMSCFSSCDLASGFL*LGIHAEDRYLTVFRDADGKLWQYVRFGFDLKTVPSAFVNYVRSRLMPVKSRGIRN*LDGIAILSRTITEHWPLLRATFKCLREGKLTVKLQKSKFFQPGLEIVGMVVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLEDPRFRRKQEEQMR---------AFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQ 897
            I+AE+ +L   G I +S S WAA C  V+K DGT+R+  D+R LN  L S SG LG +  IFDG+     F+  DLASGF  + I  +DRY T FRDADG LW++ R GF L  +P+AF   V+S L  +   G+ + LD I I S +  EH   L      L    L+V   K  F     E +GM++D  G  P PSK++A+ ++ RP TVEE+R  LG+T YLRQFV NY    AP++ +L +  F  K+  ++          AF++LRE L S  +LA PD    F+L TDAS  G GA + Q
Sbjct:  172 IRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLA--GVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCIFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQ 477          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 3.210e-60
Identity = 130/308 (42.21%), Postives = 175/308 (56.82%), Query Frame = 1
Query:    1 IQAEVVELKAIGAIDESASAWAANCSTVRKSDGTVRVDQDFRGLNSRLKSQSGDLGALAHIFDGMGKMSCFSSCDLASGFL*LGIHAEDRYLTVFRDADGKLWQYVRFGFDLKTVPSAFVNYVRSRLMPVKSRGIRN*LDGIAILSRTITEHWPLLRATFKCLREGKLTVKLQKSKFFQPGLEIVGMVVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLEDPRFRRKQEEQMR---------AFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQ 897
            I+AE+ +L   G I +S S WAA C  V+K DGT+R+  D+R LN  L S SG LG +  IFDG+     F+  DLASGF  + I  +DRY T FRDADG LW++ R GF L  +P+AF   V+S L  +   G+ + LD I I S +  EH   L      L    L+V   K  F     E +GM++D  G  P PSK++A+ ++ RP TVEE+R  LG+T YLRQFV NY    AP++ +L +  F  K+  ++          AF++LRE L S  +LA PD    F+L TDAS  G GA + Q
Sbjct:  174 IRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLA--GVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCIFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQ 479          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 7.610e-60
Identity = 130/308 (42.21%), Postives = 175/308 (56.82%), Query Frame = 1
Query:    1 IQAEVVELKAIGAIDESASAWAANCSTVRKSDGTVRVDQDFRGLNSRLKSQSGDLGALAHIFDGMGKMSCFSSCDLASGFL*LGIHAEDRYLTVFRDADGKLWQYVRFGFDLKTVPSAFVNYVRSRLMPVKSRGIRN*LDGIAILSRTITEHWPLLRATFKCLREGKLTVKLQKSKFFQPGLEIVGMVVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLEDPRFRRKQEEQMR---------AFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQ 897
            I+AE+ +L   G I +S S WAA C  V+K DGT+R+  D+R LN  L S SG LG +  IFDG+     F+  DLASGF  + I  +DRY T FRDADG LW++ R GF L  +P+AF   V+S L  +   G+ + LD I I S +  EH   L      L    L+V   K  F     E +GM++D  G  P PSK++A+ ++ RP TVEE+R  LG+T YLRQFV NY    AP++ +L +  F  K+  ++          AF++LRE L S  +LA PD    F+L TDAS  G GA + Q
Sbjct:  696 IRAEIQQLVDRGVIRQSMSPWAAQCLCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLA--GVFSWLDDILIASDSWEEHLATLTLVLNRLLAAGLSVNFAKCIFGAASQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLGVGASLMQ 1001          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: A0A6H5J659_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J659_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 2.210e-51
Identity = 121/303 (39.93%), Postives = 168/303 (55.45%), Query Frame = 1
Query:    1 IQAEVVELKAIGAIDESASAWAANCSTVRKSDGTVRVDQDFRGLNSRLKSQSGDLGALAHIFDGMGKMSCFSSCDLASGFL*LGIHAEDRYLTVFRDADGKLWQYVRFGFDLKTVPSAFVNYVRSRLMPVKSRGIRN*LDGIAILSRTITEHWPLLRATFKCLRE--GKLTVKLQKSKFFQPGLEIVGMVVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLEDPRFRRKQEEQMR---------AFRALRECLLSSTILALPDWYSDFQLRTDASETG 876
            I+AE+ +L   G I +  S WAA CS V+K DGT+R+  D+R LN  L S SG LG +  I DG+     F+  DLASGF  + I  +DRY T FRDADG LW++ R GF L  +P+AF   V+S L  +   G+ + LD I I   +  +   + R  F+   E  G L  +           E +GM++D  G  P PSK++A+ ++ RP TVEE+R  LG+T YLRQFV NY    AP++ +L +     K+  ++          AF++LRE L S  +LA PD    F+L TDAS  G
Sbjct:  225 IRAEIQQLVDRGVIRQPMSLWAAQCSCVKKKDGTLRLCIDWRELNKLLVSDSGGLGDMQTILDGLKGKKYFTQLDLASGFHQMEIAEKDRYKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRVKSALGHLA--GVFSWLDDILIAGDSXRKT--VTRRPFEMRMECFGNLRAR-----------EFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAVASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTLG 512          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 4.210e-50
Identity = 120/308 (38.96%), Postives = 165/308 (53.57%), Query Frame = 1
Query:    1 IQAEVVELKAIGAIDESASAWAANCSTVRKSDGTVRVDQDFRGLNSRLKSQSGDLGALAHIFDGMGKMSCFSSCDLASGFL*LGIHAEDRYLTVFRDADGKLWQYVRFGFDLKTVPSAFVNYVRSRLMPVKSRGIRN*LDGIAILSRTITEHWPLLRATFKCLREGKLTVKLQKSKFFQPGLEIVGMVVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLEDPRFRRKQEEQM---------RAFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQ 897
            I+AE+ +L   G I  S S WAA C  V+K DGT+R+  D+R LN  L + SG LG +  IFDG+     F+  DLASGF  + I  +DRY T FRDADG L+++ R GF L  +PSAF   V+S L  V   G+ + LD I + + T  EH   L      LR   L+V   K  F     E +GM++D  G  P PSK+ A+  + RP TVE++R L+                 AP++ +L +  F  K+  ++          AF  LR+CL S T+LA PD  + F+L +DAS  GAGA + Q
Sbjct:  334 IRAEIQQLLDRGIIRPSMSPWAAQCLCVKKKDGTMRLCIDWRVLNKLLVADSGGLGDMQTIFDGLKGKRYFTQIDLASGFHQIEIAEKDRYKTAFRDADGMLYEFTRAGFGLTVLPSAFTRRVKSALGIVD--GVFSWLDDILVANETWEEHLAALVLVLTRLRAAGLSVNFPKCIFGASSQEFLGMIIDATGMHPAPSKLEAIANMPRPQTVEDLRTLVA----------------APLTDILRNKDFASKRARKLPIQWGQAEEHAFHHLRQCLASPTVLAFPDPNAPFELHSDASSVGAGATLLQ 623          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: A0A6H5KAQ6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ6_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 4.970e-49
Identity = 105/257 (40.86%), Postives = 146/257 (56.81%), Query Frame = 1
Query:    1 IQAEVVELKAIGAIDESASAWAANCSTVRKSDGTVRVDQDFRGLNSRLKSQSGDLGALAHIFDGMGKMSCFSSCDLASGFL*LGIHAEDRYLTVFRDADGKLWQYVRFGFDLKTVPSAFVNYVRSRLMPVKSRGIRN*LDGIAILSRTITEHWPLLRATFKCLREGKLTVKLQKSKFFQPGLEIVGMVVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLEDPRFRRKQEEQM 771
            I+AE+ +L   G I  S S WAA C  V+K DGT+R+  D+R LN  L + SG LG +  IFDG+     F+  DLASGF  + I  +DRY T FRDADG L+++ R  F L  +PSAF   V+S L  V   G+ + LD I + + T  EH   L      LR   L+V   K  F     E +G+++D  G  P PSK+ A+  + RP TVE++R  LG+T YLRQFV  Y  + AP++ +L +  F  K+  ++
Sbjct:  192 IRAEIQQLLDRGIIRPSMSPWAAQCLCVKKKDGTMRLCIDWRVLNKLLVADSGGLGDMQTIFDGLKGKRYFTQIDLASGFHQIEIAEKDRYKTAFRDADGMLYEFTRAAFGLTVLPSAFTRRVKSALGIVD--GVFSWLDDILVANETWEEHLAALVLVLTRLRAAGLSVNFPKCIFGASSQEFLGIIIDATGMHPAPSKLEAIANMPRPQTVEDLRTFLGLTGYLRQFVPQYSLVAAPLTDILRNKDFASKRARKL 446          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: UPI00094E5FEC (uncharacterized protein LOC109546305 n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=UPI00094E5FEC)

HSP 1 Score: 169 bits (427), Expect = 2.540e-42
Identity = 100/299 (33.44%), Postives = 158/299 (52.84%), Query Frame = 1
Query:    1 IQAEVVELKAIGAIDESASAWAANCSTVRKSDGTVRVDQDFRGLNSRLKSQSGDLGALAHIFDGMGKMSCFSSCDLASGFL*LGIHAEDRYLTVFRDADGKLWQYVRFGFDLKTVPSAFVNYVRSRLMPVKSRGIRN*LDGIAILSRTITEHWPLLRATFKCLREGKLTVKLQKSKFFQPGLEIVGMVVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLEDPRFRRKQEEQMRAFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQ 897
            I AE+ E+  +G I+ S S W++    VRK D + R   DFR LNS  +  S  +  ++ I D +      SS D+ S F  + +    R LT F      L+ + R  F L   P+ +   +   L       +   LD I I+SRT  EH  +L   F  L++  L V+  K  F +P ++ +G +VD HG RP P K+ A++ ++ P  V E+R  +G   + R+FV N+ +++AP++ L++     R  E+  RAF ++++ L+S+ IL  PD+   F L+TDAS  G GAV+TQ
Sbjct:  640 IDAEIDEMLKLGVIEPSKSPWSSPVCLVRKKDDSYRFCIDFRKLNSVTRKDSYPIPYISAILDRLRNARYISSLDIKSAFWQVPLERSSRELTAFTVPGRNLYHFKRMPFGLTNAPATWQRLIDRVLGVDLENHVVVYLDDIVIISRTFEEHLKVLALVFDRLKDAGLVVREDKCHFCKPEMKYLGYLVDAHGLRPDPEKVQAIVNITPPRNVTEIRRFIGTASWYRRFVPNFSSVLAPLTNLIKKKVTWRWSEDCQRAFNSIKDSLISAPILTCPDFERKFVLQTDASHFGLGAVLTQ 938          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: A0A8J2RKQ4_9CRUS (RNA-directed DNA polymerase n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2RKQ4_9CRUS)

HSP 1 Score: 157 bits (396), Expect = 3.720e-38
Identity = 103/306 (33.66%), Postives = 155/306 (50.65%), Query Frame = 1
Query:   19 ELKAIGAIDESASAWAANCSTVRKSDGTVRVDQDFRGLNSRLKSQSGDLGALAHIFDGMGKMSCFSSCDLASGFL*LGIHAEDRYLTVFRDADGKLWQYVRFGFDLKTVPSAFVNYVRSRLMPVKSRGIRN*LDGIAILSRTITEHWPLLRATFKCLREGKLTVKLQKSKFFQPGLEIVGMVVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLEDPRFRRKQ-------EEQMRAFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQ-HRGSD 912
            EL     I  S S WAA    V+K  G VR+  D+R LN+  K  S  L  +  + D +     FS+ DLA+G+  + +  E +  T F   D  L+++ R  F L   P  F   +   L  V  +     LD I + SRT  EH+  LR  FK L E  L +KL K +F    +  +G ++   G  P P+K+  +   SRP TV E++  LG+  Y R+F+ ++ T+  P   LL+  + + K        E++++AF  LR  L++  +LA PD+  +F + TDAS  GAGAV++Q H G D
Sbjct:  242 ELLRFKIIQPSLSPWAAPIVLVKKKTGDVRLCVDYRKLNAITKKDSFPLPRIDDVLDMLDGQKFFSTIDLAAGYWQIEMDDESKEKTAFI-VDNNLYEWNRLAFGLTNAPGTFQRLMNFVLRGVLGKTCLVYLDDIIVFSRTKEEHFNNLRQIFKLLDEANLKMKLAKCEFLCKSVHYLGHIISGDGVAPDPAKVETLKNFSRPRTVVELQSFLGLASYYRRFIKDFSTIAHP---LLQHTQGKPKPKDLIPWGEDEIKAFECLRTILITEPVLAFPDFSKEFLVHTDASNYGAGAVLSQMHGGKD 543          
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Match: A0A8J5SW61_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SW61_ZIZPA)

HSP 1 Score: 153 bits (387), Expect = 4.320e-38
Identity = 103/300 (34.33%), Postives = 151/300 (50.33%), Query Frame = 1
Query:    1 IQAEVVELKAIGAIDESASAWAANCSTVRKSDGTVRVDQDFRGLNSRLKSQSGDLGALAHIFDGMGKMSCFSSCDLASGFL*LGIHAEDRYLTVFRDADGKLWQYVRFGFDLKTVPSAFVNYVRSRLMPVKSRGIRN*LDGIAILSRTITEHWPLLRATFKCLREGKLTVKLQKSKFFQPGLEIVGMVVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTLVAPISGLLE-DPRFRRKQEEQMRAFRALRECLLSSTILALPDWYSDFQLRTDASETGAGAVVTQ 897
            I+ +V E+   G I  S SA+++    VRK DGT R+  D+R LN         L  +  + D +     FS  DL SG+  + +   + Y T F+   G  ++Y    F L   P  F   + + L PV  +      D I + S  +  H   LR   K LRE +  VKL K  F Q  L  +G  +   G    PSK+ A++   RP TV+++R  LG+  Y R+FV N+G +  P++ LL+ D  F      +  AF AL++ L++S +LALPD+   F L TDASE G GAV++Q
Sbjct:   70 IERQVKEMLQNGVIQHSTSAFSSPALLVRKKDGTWRMVIDYRRLNDVTIKSKYPLPVIDELLDELHGSKYFSKLDLRSGYHQIRLVEGEEYKTAFQTHTGH-YEYRVMSFGLTGAPGTFQGAMNNTLAPVLRKYALVFFDDILVYSPDLYSHAQHLRHVLKLLREHQWKVKLSKCSFGQSSLSYLGYTISSDGVSTDPSKVQAIVDWPRPETVKKLRGFLGLAGYYRKFVRNFGIISKPLTTLLKKDVEFNWTPAAES-AFIALKQALVTSPVLALPDFSKQFVLETDASEVGIGAVLSQ 367          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77.15372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIS6_9PHAE6.260e-6442.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQV6_9PHAE9.360e-6242.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFK7_9PHAE3.210e-6042.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE7.610e-6042.21RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5J659_9PHAE2.210e-5139.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBF4_9PHAE4.210e-5038.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAQ6_9PHAE4.970e-4940.86Reverse transcriptase domain-containing protein n=... [more]
UPI00094E5FEC2.540e-4233.44uncharacterized protein LOC109546305 n=1 Tax=Dendr... [more]
A0A8J2RKQ4_9CRUS3.720e-3833.66RNA-directed DNA polymerase n=1 Tax=Daphnia galeat... [more]
A0A8J5SW61_ZIZPA4.320e-3834.33Uncharacterized protein n=1 Tax=Zizania palustris ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77contigH-elongata_contig77:2494..3725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score92.8
Seed ortholog evalue2e-16
Seed eggNOG ortholog3659.XP_004162300.1
EggNOG free text desc.Retroviral aspartyl protease
EggNOG OGs38A4S@33090,3GXKV@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1189
Cds size630
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77.15372.1prot_H-elongata_contig77.15372.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77 2494..3167 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.511367-CDS-H-elongata_contig77:2493..27731622931174.511367-CDS-H-elongata_contig77:2493..2773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77 2494..2773 -
1691679728.77314-CDS-H-elongata_contig77:2493..27731691679728.77314-CDS-H-elongata_contig77:2493..2773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77 2494..2773 -
1622931174.5326426-CDS-H-elongata_contig77:2790..29401622931174.5326426-CDS-H-elongata_contig77:2790..2940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77 2791..2940 -
1691679728.7890742-CDS-H-elongata_contig77:2790..29401691679728.7890742-CDS-H-elongata_contig77:2790..2940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77 2791..2940 -
1622931174.551199-CDS-H-elongata_contig77:2967..31671622931174.551199-CDS-H-elongata_contig77:2967..3167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77 2968..3167 -
1691679728.8030808-CDS-H-elongata_contig77:2967..31671691679728.8030808-CDS-H-elongata_contig77:2967..3167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77 2968..3167 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931174.5848927-UTR-H-elongata_contig77:3167..37251622931174.5848927-UTR-H-elongata_contig77:3167..3725Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77 3168..3725 -
1691679728.8144765-UTR-H-elongata_contig77:3167..37251691679728.8144765-UTR-H-elongata_contig77:3167..3725Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77 3168..3725 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77.15372.1

>prot_H-elongata_contig77.15372.1 ID=prot_H-elongata_contig77.15372.1|Name=mRNA_H-elongata_contig77.15372.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=210bp
MVVDQHGTRPVPSKINAVMQLSRPITVEEVRVLLGMTWYLRQFVFNYGTL
VAPISGLLEDPRFRRKQEEQMRAFRALRECLLSSTILALPDWYSDFQLRT
DASETGAGAVVTQHRGSDCLRELAVIKNGLLEITNRLRMHGSHVCRCQVP
VLPLGVVVHIYHRLLGADLAVQEPAPLTEVPPLGTPPYGVRRDLEVATRH
AEPAGGCHVP
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mRNA from alignment at H-elongata_contig77:2494..3725-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77.15372.1 ID=mRNA_H-elongata_contig77.15372.1|Name=mRNA_H-elongata_contig77.15372.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1232bp|location=Sequence derived from alignment at H-elongata_contig77:2494..3725- (Himanthalia elongata Himel1 dioecious)
ATCCAGGCCGAAGTCGTCGAACTCAAAGCGATAGGGGCGATTGATGAATC CGCTTCAGCTTGGGCAGCAAATTGCTCCACCGTGCGTAAGAGCGACGGGA CCGTACGCGTAGATCAGGACTTCCGCGGCCTCAATTCCCGCCTAAAGTCA CAAAGTGGAGACCTCGGAGCCCTGGCGCACATATTCGACGGGATGGGGAA GATGTCGTGTTTTTCAAGTTGCGACCTCGCGTCGGGGTTCCTGTAACTCG GGATCCACGCGGAAGACAGGTACCTGACGGTTTTTCGCGATGCTGACGGG AAGCTCTGGCAATACGTGCGATTTGGCTTCGACCTCAAGACGGTACCGTC CGCCTTCGTGAACTACGTGAGAAGCAGGCTCATGCCCGTTAAGAGTCGAG GAATAAGGAACTAGCTTGACGGCATCGCCATCCTATCGCGGACAATCACA GAACATTGGCCGCTGCTCCGGGCCACCTTCAAGTGCCTGCGGGAGGGCAA GCTCACGGTGAAACTCCAGAAATCGAAGTTCTTCCAGCCAGGGCTGGAGA TCGTTGGTATGGTCGTCGACCAACACGGAACCAGGCCGGTCCCGAGCAAG ATCAACGCAGTTATGCAGCTGTCGCGACCGATCACCGTGGAGGAAGTCCG GGTGCTGCTGGGGATGACATGGTACCTGAGACAGTTCGTGTTCAATTACG GTACCCTGGTAGCGCCAATCTCTGGTCTGCTGGAAGACCCACGGTTCCGC CGGAAGCAGTCACGAAGGATGAGCGTACCATGAAGAGAGGAGCAGATGAG AGCCTTCCGAGCTCTGCGGGAGTGCCTGCTGTCATCAACCATCCTGGCCC TTCCGGACTGGTACTCTGACTTTCAGCTGCGCACCGATGCCAGCGAGACT GGGGCGGGAGCAGTCGTGACCCAGCACCGGGGGTCGTGAACCATGGAAAA AGTGATTGCCTACGGGAGTTGGCGGTGATAAAAAATGGACTCCTTGAGAT CACCAACCGACTGCGAATGCATGGTAGTCATGTGTGTCGTTGCCAAGTTC CAGTCCTACCTCTGGGGGTGGTCGTTCACATTTATCACCGACTGCTCGGC GCTGATCTGGCTGTTCAAGAGCCAGCCCCTCTCACCGAAGTACCACCGCT GGGTACTCCGCCTTATGGAGTACGACGTGACCTTGAAGTGGCGACCCGGC ACGCAGAACCAGCTGGCGGATGTCATGTCCCG
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Coding sequence (CDS) from alignment at H-elongata_contig77:2494..3725-

>mRNA_H-elongata_contig77.15372.1 ID=mRNA_H-elongata_contig77.15372.1|Name=mRNA_H-elongata_contig77.15372.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1260bp|location=Sequence derived from alignment at H-elongata_contig77:2494..3725- (Himanthalia elongata Himel1 dioecious)
ATGGTCGTCGACCAACACGGAACCAGGCCGGTCCCGAGCAAGATCAACGC
AGTTATGCAGCTGTCGCGACCGATCACCGTGGAGGAAGTCCGGGTGCTGC
TGGGGATGACATGGTACCTGAGACAGTTCGTGTTCAATTACGGTACCCTG
GTAGCGCCAATCTCTGGTCTGCTGGAAGACCCACGGTTCCGCCGGAAGCA
ATGGTCGTCGACCAACACGGAACCAGGCCGGTCCCGAGCAAGATCAACGC
AGTTATGCAGCTGTCGCGACCGATCACCGTGGAGGAAGTCCGGGTGCTGC
TGGGGATGACATGGTACCTGAGACAGTTCGTGTTCAATTACGGTACCCTG
GTAGCGCCAATCTCTGGTCTGCTGGAAGACCCACGGTTCCGCCGGAAGCA
AGAGGAGCAGATGAGAGCCTTCCGAGCTCTGCGGGAGTGCCTGCTGTCAT
CAACCATCCTGGCCCTTCCGGACTGGTACTCTGACTTTCAGCTGCGCACC
GATGCCAGCGAGACTGGGGCGGGAGCAGTCGTGACCCAGCACCGGGGGTC
AGAGGAGCAGATGAGAGCCTTCCGAGCTCTGCGGGAGTGCCTGCTGTCAT
CAACCATCCTGGCCCTTCCGGACTGGTACTCTGACTTTCAGCTGCGCACC
GATGCCAGCGAGACTGGGGCGGGAGCAGTCGTGACCCAGCACCGGGGGTC
TGATTGCCTACGGGAGTTGGCGGTGATAAAAAATGGACTCCTTGAGATCA
CCAACCGACTGCGAATGCATGGTAGTCATGTGTGTCGTTGCCAAGTTCCA
GTCCTACCTCTGGGGGTGGTCGTTCACATTTATCACCGACTGCTCGGCGC
TGATCTGGCTGTTCAAGAGCCAGCCCCTCTCACCGAAGTACCACCGCTGG
GTACTCCGCCTTATGGAGTACGACGTGACCTTGAAGTGGCGACCCGGCAC
GCAGAACCAGCTGGCGGATGTCATGTCCCGTGATTGCCTACGGGAGTTGG
CGGTGATAAAAAATGGACTCCTTGAGATCACCAACCGACTGCGAATGCAT
GGTAGTCATGTGTGTCGTTGCCAAGTTCCAGTCCTACCTCTGGGGGTGGT
CGTTCACATTTATCACCGACTGCTCGGCGCTGATCTGGCTGTTCAAGAGC
CAGCCCCTCTCACCGAAGTACCACCGCTGGGTACTCCGCCTTATGGAGTA
CGACGTGACCTTGAAGTGGCGACCCGGCACGCAGAACCAGCTGGCGGATG
TCATGTCCCG
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