mRNA_H-elongata_contig76983.15369.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig76983.15369.1 vs. uniprot
Match: D7FX53_ECTSI (CRM1_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX53_ECTSI) HSP 1 Score: 196 bits (498), Expect = 1.220e-55 Identity = 97/140 (69.29%), Postives = 112/140 (80.00%), Query Frame = 2
Query: 326 SSVARNSLQAITVMATHHVAEVSKGREGLSGHLTVKPDTFLDILRTLLHMLVFQQSVWDRLEACAQAILPLVVCEQEGFQRLAAEIVASQPEATRPRLVEAFEALYDCHGKCGGGLERLGRWRFETAMREFVTTIRAFLQ 745
S VARNSLQAI+VMA HHV+E KG EGLS HL VKPD FL ILRTLL ML+FQ+S+WDRL+AC+ A+LPL+VCEQEGFQRLA E+VASQPE RPRLV+AF L+ H CGGGL+R GR RF AM+EF + R FLQ
Sbjct: 204 SPVARNSLQAISVMAGHHVSEKVKGGEGLSAHLAVKPDLFLGILRTLLDMLMFQRSLWDRLDACSLAVLPLLVCEQEGFQRLAEELVASQPETVRPRLVKAFHKLHASHAACGGGLDRAGRRRFPEAMKEFTMSCRGFLQ 343
BLAST of mRNA_H-elongata_contig76983.15369.1 vs. uniprot
Match: A0A6H5K492_9PHAE (CRM1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K492_9PHAE) HSP 1 Score: 199 bits (507), Expect = 8.270e-55 Identity = 99/140 (70.71%), Postives = 113/140 (80.71%), Query Frame = 2
Query: 326 SSVARNSLQAITVMATHHVAEVSKGREGLSGHLTVKPDTFLDILRTLLHMLVFQQSVWDRLEACAQAILPLVVCEQEGFQRLAAEIVASQPEATRPRLVEAFEALYDCHGKCGGGLERLGRWRFETAMREFVTTIRAFLQ 745
S VARNSLQAI+VMA HHV+E KG EGLS HL VKPD FL ILRTLL ML+FQ+S+WDRL+AC+ A+LPL+VCEQEGFQRLA E+VASQPEA RPRLVEAF L+ H CGGGL+R GR RF AM+EF + R FLQ
Sbjct: 420 SPVARNSLQAISVMAGHHVSEKMKGGEGLSAHLAVKPDLFLGILRTLLDMLMFQRSLWDRLDACSLAVLPLLVCEQEGFQRLAEELVASQPEAVRPRLVEAFHKLHASHAACGGGLDRAGRRRFPEAMKEFTMSCRGFLQ 559
BLAST of mRNA_H-elongata_contig76983.15369.1 vs. uniprot
Match: A0A835ZAA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA3_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 5.520e-20 Identity = 51/116 (43.97%), Postives = 67/116 (57.76%), Query Frame = 2
Query: 401 REGLSGHLTVKPDTFLDILRTLLHMLVFQQSVWDRLEACAQAILPLVVCEQEGFQRLAAEIVASQPEATRPRLVEAFEALYDCHGKCGGGLERLGRWRFETAMREFVTTIRAFLQI 748
R GLS L P D+L LL + FQ +VWDRL+ACA+A+LP++VC+Q G+Q LA +V Q RPRL A AL +G L+R R RF +R F +RAFL +
Sbjct: 2 RTGLSRQLEAWPGLLRDLLTALLQLAAFQSAVWDRLDACAEALLPIIVCDQHGYQALATALVEQQSPDARPRLAAALHALVTDNGLTMD-LKRDTRRRFVENLRRFAGDVRAFLMV 116
BLAST of mRNA_H-elongata_contig76983.15369.1 vs. uniprot
Match: I2CP64_NANGC (Exportin 4 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP64_NANGC) HSP 1 Score: 92.4 bits (228), Expect = 1.120e-16 Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 2
Query: 323 ESSVARNSLQAITVMATHHVAEVSK----------GREGLSGHLTVKPDTFLDILRTLLHMLVFQQSVWDRLEACAQAILPLVVCEQEGFQRLAAEIVASQPEATRPRLVEAFEALYDC--------HGKCGG-----GLERLGRWRFETAMREFVTTIRAFLQI 748
+S +AR+SL+A+ +A+ H V G GL H+T P F + R LLH++V++ SVWDRL+A + A+L L++C++E F L A I+ QP + + RL + F+ L G+ GG +R + F +R F T +R F+Q+
Sbjct: 311 DSEIARDSLRALAGLASFHAQTVGSRVRSAGHANGGGRGLEAHVTAHPALFSECTRKLLHLVVYEGSVWDRLDAASNALLALILCDREAFLCLLAGILEEQPPSVKERLGQEFQKLMSAIPPRMEGGDGREGGRRRGPAWDRQTKLAFRHHLRAFATQVRPFMQM 475
BLAST of mRNA_H-elongata_contig76983.15369.1 vs. uniprot
Match: W7UAN9_9STRA (Exportin 4 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UAN9_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.660e-16 Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 2
Query: 323 ESSVARNSLQAITVMATHHVAEVSK----------GREGLSGHLTVKPDTFLDILRTLLHMLVFQQSVWDRLEACAQAILPLVVCEQEGFQRLAAEIVASQPEATRPRLVEAFEALYDC--------HGKCGG-----GLERLGRWRFETAMREFVTTIRAFLQI 748
+S +AR+SL+A+ +A+ H V G GL H+T P F + R LLH++V++ SVWDRL+A + A+L L++C++E F L A I+ QP + + RL + F+ L G+ GG +R + F +R F T +R F+Q+
Sbjct: 461 DSEIARDSLRALAGLASFHAQTVGSRVRSAGHANGGGRGLEAHVTAHPALFSECTRKLLHLVVYEGSVWDRLDAASNALLALILCDREAFLCLLAGILEEQPPSVKERLGQEFQKLMSAIPPRMEGGDGREGGRRRGPAWDRQTKLAFRHHLRAFATQVRPFMQM 625
BLAST of mRNA_H-elongata_contig76983.15369.1 vs. uniprot
Match: A0A4D9CWA8_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWA8_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 3.160e-16 Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 2
Query: 323 ESSVARNSLQAITVMATHHVAEVSK----------GREGLSGHLTVKPDTFLDILRTLLHMLVFQQSVWDRLEACAQAILPLVVCEQEGFQRLAAEIVASQPEATRPRLVEAFEALYDC--------HGKCGG-----GLERLGRWRFETAMREFVTTIRAFLQI 748
+S +AR+SL+A+ +A+ H V G GL H+T P F + R LLH++V++ SVWDRL+A + A+L L++C++E F L A I+ QP + + RL + F+ L G+ GG +R + F +R F T +R F+Q+
Sbjct: 1069 DSEIARDSLRALAGLASFHAQTVGTRVGPAGHANGGGRGLEAHVTAHPALFSECTRKLLHLVVYEGSVWDRLDAASNALLALILCDREAFLCLLAGILEEQPPSVKERLGQEFQKLMSAIPPRVEGGDGREGGRRRGPAWDRQTKLAFRHHLRAFATQVRPFMQM 1233
BLAST of mRNA_H-elongata_contig76983.15369.1 vs. uniprot
Match: A0A0S3S531_PHAAN (CRM1_C domain-containing protein n=1 Tax=Vigna angularis var. angularis TaxID=157739 RepID=A0A0S3S531_PHAAN) HSP 1 Score: 82.8 bits (203), Expect = 2.740e-13 Identity = 48/150 (32.00%), Postives = 78/150 (52.00%), Query Frame = 2
Query: 323 ESSVARNSLQAITVMATHHVAEVSKGREGLSGHLTVKPDTFLDI--------LRTLLHMLVFQQSVWDRLEACAQAILPLVVCEQEGFQRLAAEIVASQPEAT-RPRLVEAFEALYDCHGKCGGGLERLGRWRFETAMREFVTTIRAFLQ 745
++ V SL+A+ +A++H E G GL H T D+ ++ LR+LL +L+F+ D + A A+LPL++CEQ +QRL E++ QP T + RL AF L + + L+R+ RF + F+ +R FL+
Sbjct: 668 DADVVSKSLRALQALASYHYKETGNGNIGLGAHTTGLKDSSGNVQEGLLSRFLRSLLQLLLFEDYSSDLISVAADALLPLILCEQGLYQRLGNELIERQPNPTLKTRLANAFHTLTSAN-QLSSSLDRINYQRFRKNLTSFLVEVRGFLR 816
BLAST of mRNA_H-elongata_contig76983.15369.1 vs. uniprot
Match: A0A1Y1HRT7_KLENI (Nuclear transport receptor exportin 4 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HRT7_KLENI) HSP 1 Score: 81.6 bits (200), Expect = 7.440e-13 Identity = 49/143 (34.27%), Postives = 82/143 (57.34%), Query Frame = 2
Query: 323 ESSVARNSLQAITVMATHHVAEVSKGREGLSGHLTVKPDTFL-DILRTLLHMLVFQQSVWDRLEACAQAILPLVVCEQEGFQRLAAEIVASQPEAT-RPRLVEAFEALYDCHGKCGGGLERLGRWRFETAMREFVTTIRAFLQ 745
E V SL+A++ +A+ H S+G GL H++ ++ L LR LLH+L+F+ D +E A A+LPL++CEQ +Q+L E++ Q +A + RL A L +G G L+R + +F ++ F+T +R+FL+
Sbjct: 1021 EPDVITLSLEALSGVASFHHVAASRGEPGLGVHVSGASESVLAHFLRALLHLLLFEDYSSDIVEPAANALLPLILCEQALYQKLGHELLTGQSDAELQNRLASALHTLLSING-VGTTLDRGNKRKFRQNLQAFLTDVRSFLR 1162
BLAST of mRNA_H-elongata_contig76983.15369.1 vs. uniprot
Match: A0A484KD87_9ASTE (CRM1_C domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KD87_9ASTE) HSP 1 Score: 79.0 bits (193), Expect = 1.120e-12 Identity = 48/145 (33.10%), Postives = 77/145 (53.10%), Query Frame = 2
Query: 344 SLQAITVMATHHVAEVSKGREGLSGHLTVKPDT--------FLDILRTLLHMLVFQQSVWDRLEACAQAILPLVVCEQEGFQRLAAEIVASQPEAT-RPRLVEAFEALYDCHGKCGGGLERLGRWRFETAMREFVTTIRAFLQIV 751
SLQA+ +A++H E G+ GL D+ + LR+LL L+F+ D + + A A+LPL++CEQ+ +QRL E++ Q T + RL AF++L +G L+RL +F +R F+ +R FL+ V
Sbjct: 168 SLQAVNALASYHYKERGAGKIGLGSRAAASTDSAGNLQEGILSNFLRSLLQFLLFEDYSNDIVGSAADALLPLILCEQDLYQRLGHELIERQANPTFKLRLTNAFQSLTSSNG-ISSTLDRLNYQKFRKNLRAFLIEVRGFLRTV 311
BLAST of mRNA_H-elongata_contig76983.15369.1 vs. uniprot
Match: A0A7I8LLI0_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LLI0_SPIIN) HSP 1 Score: 80.5 bits (197), Expect = 1.750e-12 Identity = 45/151 (29.80%), Postives = 82/151 (54.30%), Query Frame = 2
Query: 323 ESSVARNSLQAITVMATHHVAEVSKGREGLSGHL--------TVKPDTFLDILRTLLHMLVFQQSVWDRLEACAQAILPLVVCEQEGFQRLAAEIVASQPEAT-RPRLVEAFEALYDCHGKCGGGLERLGRWRFETAMREFVTTIRAFLQI 748
+S V L+A+ +++HH E S+G+EGL + T++ LR LLH+++F+ + + A A+LPLV+CEQ+ +QRL E++ P + +PRL A ++L + + L+R+ R RF + + + + FL++
Sbjct: 1009 DSDVVDMCLRAVAALSSHHYRERSRGQEGLGAYAVSSYGPEGTLQEGFLSHFLRLLLHLILFEDFSMELAGSAADALLPLVLCEQDLYQRLVQELIERLPNPSLKPRLAFALQSLTSSN-QLSASLDRVNRQRFRKNLSKLLVDVSGFLRV 1158 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76983.15369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig76983.15369.1 >prot_H-elongata_contig76983.15369.1 ID=prot_H-elongata_contig76983.15369.1|Name=mRNA_H-elongata_contig76983.15369.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp MATHHVAEVSKGREGLSGHLTVKPDTFLDILRTLLHMLVFQQSVWDRLEAback to top mRNA from alignment at H-elongata_contig76983:1034..2997+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig76983.15369.1 ID=mRNA_H-elongata_contig76983.15369.1|Name=mRNA_H-elongata_contig76983.15369.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1964bp|location=Sequence derived from alignment at H-elongata_contig76983:1034..2997+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig76983:1034..2997+ >mRNA_H-elongata_contig76983.15369.1 ID=mRNA_H-elongata_contig76983.15369.1|Name=mRNA_H-elongata_contig76983.15369.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig76983:1034..2997+ (Himanthalia elongata Himel1 dioecious)back to top |