mRNA_H-elongata_contig76954.15365.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig76954.15365.1 vs. uniprot
Match: D8LMY1_ECTSI (Protein-synthesizing GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMY1_ECTSI) HSP 1 Score: 340 bits (871), Expect = 1.180e-113 Identity = 171/194 (88.14%), Postives = 178/194 (91.75%), Query Frame = 1
Query: 1 VCTQTVRFKNELERNITIKLGYANAKIYKAVQGAVPGPGNFRSKGSHHADRFEEDGKTWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNETCPQPQTSEHLAAVEIMRLKNIIILQNKASESREFCLLSMSVDLVKHDQAMVQHEQIRKFVAGTVANDAPVIPISAVLKYNIDVVCEYIHCKIPIP 582
+ QTVRFKNELERNITIKLGYANAKI+KAV+GAVPGPGNFRSKGSHH DRFEEDGKTWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNETCPQPQTSEHLAAVEIMRL+NIIILQNK VDLVKHDQAM+QHEQIRKFVAGTVA+DAPVIPISAVLKYNIDVVCEYI+CKIPIP
Sbjct: 42 LAVQTVRFKNELERNITIKLGYANAKIFKAVEGAVPGPGNFRSKGSHHGDRFEEDGKTWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNETCPQPQTSEHLAAVEIMRLQNIIILQNK-------------VDLVKHDQAMLQHEQIRKFVAGTVADDAPVIPISAVLKYNIDVVCEYINCKIPIP 222
BLAST of mRNA_H-elongata_contig76954.15365.1 vs. uniprot
Match: A0A835YYS7_9STRA (Protein-synthesizing GTPase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYS7_9STRA) HSP 1 Score: 285 bits (729), Expect = 1.380e-91 Identity = 147/192 (76.56%), Postives = 163/192 (84.90%), Query Frame = 1
Query: 10 QTVRFKNELERNITIKLGYANAKIYKAVQGAVPGP-GNFRSKGSHHADRFEEDGKTWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNETCPQPQTSEHLAAVEIMRLKNIIILQNKASESREFCLLSMSVDLVKHDQAMVQHEQIRKFVAGTVANDAPVIPISAVLKYNIDVVCEYIHCKIPIP 582
QTVRFKNELERNITIKLGYANAK+Y A +GA G GN+ S+GS HAD FEE+GK W LQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNE CPQPQTSEHLAAVEIMRL+NIIILQNK VDLVK DQA++QHEQI++FVAGTVA++AP+IPISAV++YN+DVVCEYI IPIP
Sbjct: 93 QTVRFKNELERNITIKLGYANAKVYNAQEGAREGELGNYTSRGSAHADVFEENGKQWHLQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNEPCPQPQTSEHLAAVEIMRLQNIIILQNK-------------VDLVKQDQALLQHEQIKRFVAGTVADNAPIIPISAVMRYNVDVVCEYICNNIPIP 271
BLAST of mRNA_H-elongata_contig76954.15365.1 vs. uniprot
Match: A0A6U4HRZ6_9STRA (Protein-synthesizing GTPase n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HRZ6_9STRA) HSP 1 Score: 283 bits (723), Expect = 1.160e-90 Identity = 144/191 (75.39%), Postives = 160/191 (83.77%), Query Frame = 1
Query: 10 QTVRFKNELERNITIKLGYANAKIYKAVQGAVPGPGNFRSKGSHHADRFEEDGKTWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNETCPQPQTSEHLAAVEIMRLKNIIILQNKASESREFCLLSMSVDLVKHDQAMVQHEQIRKFVAGTVANDAPVIPISAVLKYNIDVVCEYIHCKIPIP 582
QTVRFKNEL RNITIKLGYANAK+YKA A PGN+RSKGS H D FEEDGKTWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLL+AGNE CPQPQTSEHLAAVEIMRL++IIILQNK VDLVK + A+ QH+QIR+FVAGTVA+ APVIP+SAVLKYN+DV+CEY+ ++P P
Sbjct: 87 QTVRFKNELVRNITIKLGYANAKLYKARDAAPGVPGNYRSKGSAHPDVFEEDGKTWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEPCPQPQTSEHLAAVEIMRLQHIIILQNK-------------VDLVKEEDALAQHQQIRRFVAGTVADSAPVIPMSAVLKYNVDVLCEYLVHRVPEP 264
BLAST of mRNA_H-elongata_contig76954.15365.1 vs. uniprot
Match: A0A6S9GDD6_HETAK (Protein-synthesizing GTPase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GDD6_HETAK) HSP 1 Score: 278 bits (711), Expect = 3.940e-89 Identity = 145/191 (75.92%), Postives = 158/191 (82.72%), Query Frame = 1
Query: 10 QTVRFKNELERNITIKLGYANAKIYKAVQGAVPGPGNFRSKGSHHADRFEEDGKTWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNETCPQPQTSEHLAAVEIMRLKNIIILQNKASESREFCLLSMSVDLVKHDQAMVQHEQIRKFVAGTVANDAPVIPISAVLKYNIDVVCEYIHCKIPIP 582
QTVRFKNELERNITIKLGYANAKIYKA G G++RS GS DRFEE GKTWEL RHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNE CPQPQTSEHLAAVEIMRL+NIIILQNK VDLVK +QA+ QHEQI++FVAGTVA+ APV+P+SAVLKYNIDVVCEY+ +P+P
Sbjct: 78 QTVRFKNELERNITIKLGYANAKIYKAA--GEEGMGSYRSWGSSKPDRFEEGGKTWELVRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNEPCPQPQTSEHLAAVEIMRLQNIIILQNK-------------VDLVKQEQALAQHEQIKRFVAGTVADAAPVVPVSAVLKYNIDVVCEYLAKDVPVP 253
BLAST of mRNA_H-elongata_contig76954.15365.1 vs. uniprot
Match: A0A7S4A8Q2_9STRA (Protein-synthesizing GTPase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8Q2_9STRA) HSP 1 Score: 275 bits (703), Expect = 4.140e-88 Identity = 149/192 (77.60%), Postives = 154/192 (80.21%), Query Frame = 1
Query: 10 QTVRFKNELERNITIKLGYANAKIYKAVQGAVPGPGNFRSKGSHHADRFEE-DGKTWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNETCPQPQTSEHLAAVEIMRLKNIIILQNKASESREFCLLSMSVDLVKHDQAMVQHEQIRKFVAGTVANDAPVIPISAVLKYNIDVVCEYIHCKIPIP 582
QTVRFKNELERNITIKLGYANAKIYK V PGPGNF S+GS D FE+ DG W L RHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNE CPQPQTSEHLAAVEIMRL+NI+ILQNK VDLVK DQA QHEQIRKFVAGTVA DAPVIPISAVLKYNID VCEY+ IP P
Sbjct: 58 QTVRFKNELERNITIKLGYANAKIYKRVA-ERPGPGNFCSRGSATPDAFEDGDGARWALARHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNEPCPQPQTSEHLAAVEIMRLENILILQNK-------------VDLVKPDQARAQHEQIRKFVAGTVAGDAPVIPISAVLKYNIDAVCEYVAHAIPTP 235
BLAST of mRNA_H-elongata_contig76954.15365.1 vs. uniprot
Match: A0A7S2XYP2_9STRA (Protein-synthesizing GTPase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYP2_9STRA) HSP 1 Score: 274 bits (700), Expect = 8.350e-88 Identity = 144/194 (74.23%), Postives = 159/194 (81.96%), Query Frame = 1
Query: 10 QTVRFKNELERNITIKLGYANAKIYKA---VQGAVPGPGNFRSKGSHHADRFEEDGKTWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNETCPQPQTSEHLAAVEIMRLKNIIILQNKASESREFCLLSMSVDLVKHDQAMVQHEQIRKFVAGTVANDAPVIPISAVLKYNIDVVCEYIHCKIPIP 582
QTVRFKNE+ERNITIKLGYANAKIY+A +G P G +RSKGS AD FEE G+TW L RHVSFVDCPGHDILMATMLNGAAVMDAALLL+AGNE CPQPQTSEHLAAVEIMRL ++IILQNK VDLVK +QAMVQHEQI+KFVAGTVA++APVIPISAVL+YNIDV CE+I IP+P
Sbjct: 86 QTVRFKNEMERNITIKLGYANAKIYQADKLEEGEAPQMGLYRSKGSSTADVFEEGGRTWRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEPCPQPQTSEHLAAVEIMRLNHVIILQNK-------------VDLVKPEQAMVQHEQIKKFVAGTVADNAPVIPISAVLRYNIDVACEFIARNIPVP 266
BLAST of mRNA_H-elongata_contig76954.15365.1 vs. uniprot
Match: A0A2R5G8R1_9STRA (Protein-synthesizing GTPase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8R1_9STRA) HSP 1 Score: 273 bits (699), Expect = 3.600e-87 Identity = 138/191 (72.25%), Postives = 160/191 (83.77%), Query Frame = 1
Query: 10 QTVRFKNELERNITIKLGYANAKIYKAVQGAVPGPGNFRSKGSHHADRFEEDGKTWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNETCPQPQTSEHLAAVEIMRLKNIIILQNKASESREFCLLSMSVDLVKHDQAMVQHEQIRKFVAGTVANDAPVIPISAVLKYNIDVVCEYIHCKIPIP 582
+TVRFKNELERNITIKLGYANAKIY+ V P PGN+ S+GS+ AD FE++ TWEL+RH+SFVDCPGHDILMATMLNGAAVMDAALLL+AGNE+CPQPQTSEHLAAVEIM+L+NIIILQNK +DLVK D A+ QHEQIR+FVAGTVA+ +P+IPISAVLKYNIDV+CEY+ IP+P
Sbjct: 91 KTVRFKNELERNITIKLGYANAKIYECVNPDCPKPGNYTSRGSNTADVFEDEKGTWELRRHLSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLQNIIILQNK-------------IDLVKEDAAIQQHEQIRQFVAGTVADKSPIIPISAVLKYNIDVICEYMVKHIPVP 268
BLAST of mRNA_H-elongata_contig76954.15365.1 vs. uniprot
Match: A0A812SA83_SYMMI (Protein-synthesizing GTPase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SA83_SYMMI) HSP 1 Score: 272 bits (695), Expect = 1.520e-86 Identity = 145/191 (75.92%), Postives = 156/191 (81.68%), Query Frame = 1
Query: 10 QTVRFKNELERNITIKLGYANAKIYKAVQGAVPGPGNFRSKGSHHADRFEEDGKTWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNETCPQPQTSEHLAAVEIMRLKNIIILQNKASESREFCLLSMSVDLVKHDQAMVQHEQIRKFVAGTVANDAPVIPISAVLKYNIDVVCEYIHCKIPIP 582
QTVRFKNEL RNITIKLGYANAKIY+A G G +RSKGS AD F EDGKTW +QRHVSFVDCPGHDILMATMLNGAAVMDAALLL+AGNETCPQPQTSEHLAAVEIM+L +IIILQNK VDLVK +QA QHEQIRKFVAGTVA+ AP+IPISAVL+YNID+VCEYI IPIP
Sbjct: 84 QTVRFKNELIRNITIKLGYANAKIYRA-DGPANEMGLYRSKGSSTADSFVEDGKTWNVQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNETCPQPQTSEHLAAVEIMKLPHIIILQNK-------------VDLVKQEQAEAQHEQIRKFVAGTVADSAPIIPISAVLRYNIDMVCEYIARYIPIP 260
BLAST of mRNA_H-elongata_contig76954.15365.1 vs. uniprot
Match: K3WE95_GLOUD (Protein-synthesizing GTPase n=29 Tax=Oomycota TaxID=4762 RepID=K3WE95_GLOUD) HSP 1 Score: 266 bits (681), Expect = 8.980e-85 Identity = 144/194 (74.23%), Postives = 154/194 (79.38%), Query Frame = 1
Query: 10 QTVRFKNELERNITIKLGYANAKIYKAVQGAVPGPGNFRSKGSHHADRFEE---DGKTWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNETCPQPQTSEHLAAVEIMRLKNIIILQNKASESREFCLLSMSVDLVKHDQAMVQHEQIRKFVAGTVANDAPVIPISAVLKYNIDVVCEYIHCKIPIP 582
QTVRFKNELERNITIKLGYANAKIY+A G G G +R+ GS DRF + D W LQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNE CPQPQTSEHLAA+EIMRL+NIIILQNK VDL+K D A QHEQI+KFVAGTVA+DAP+IPISAVLKYNIDVVCEYI IPIP
Sbjct: 60 QTVRFKNELERNITIKLGYANAKIYRAENGT--GIGCYRAFGSSKPDRFVDEVDDNTVWVLQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNEVCPQPQTSEHLAAIEIMRLQNIIILQNK-------------VDLIKEDAACAQHEQIKKFVAGTVAHDAPIIPISAVLKYNIDVVCEYICRNIPIP 238
BLAST of mRNA_H-elongata_contig76954.15365.1 vs. uniprot
Match: W7U2Z3_9STRA (Protein-synthesizing GTPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2Z3_9STRA) HSP 1 Score: 266 bits (680), Expect = 1.230e-84 Identity = 139/190 (73.16%), Postives = 152/190 (80.00%), Query Frame = 1
Query: 13 TVRFKNELERNITIKLGYANAKIYKAVQGAVPGPGNFRSKGSHHADRFEEDGKTWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNETCPQPQTSEHLAAVEIMRLKNIIILQNKASESREFCLLSMSVDLVKHDQAMVQHEQIRKFVAGTVANDAPVIPISAVLKYNIDVVCEYIHCKIPIP 582
TVR K ELERNITIKLGYANAKIYK PGN+R+KGS D FEEDGKTW LQRHVSFVDCPGHDILMATMLNGAAVMDAALLL+AGNE CPQPQTSEHLAAVEIMRL NIIILQNK VDLVK A +QH+QIRKFVAGTVA+ +P+IPISAV K+NID+VCEY+ +IP+P
Sbjct: 47 TVRTKPELERNITIKLGYANAKIYKCDPAEEGVPGNYRAKGSSAPDVFEEDGKTWRLQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEHLAAVEIMRLANIIILQNK-------------VDLVKPADASMQHDQIRKFVAGTVADASPIIPISAVKKFNIDIVCEYLVNRIPVP 223 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76954.15365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig76954.15365.1 >prot_H-elongata_contig76954.15365.1 ID=prot_H-elongata_contig76954.15365.1|Name=mRNA_H-elongata_contig76954.15365.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp VCTQTVRFKNELERNITIKLGYANAKIYKAVQGAVPGPGNFRSKGSHHADback to top mRNA from alignment at H-elongata_contig76954:439..2703+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig76954.15365.1 ID=mRNA_H-elongata_contig76954.15365.1|Name=mRNA_H-elongata_contig76954.15365.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2265bp|location=Sequence derived from alignment at H-elongata_contig76954:439..2703+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig76954:439..2703+ >mRNA_H-elongata_contig76954.15365.1 ID=mRNA_H-elongata_contig76954.15365.1|Name=mRNA_H-elongata_contig76954.15365.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig76954:439..2703+ (Himanthalia elongata Himel1 dioecious)back to top |