mRNA_H-elongata_contig76867.15355.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76867.15355.1
Unique NamemRNA_H-elongata_contig76867.15355.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76867.15355.1 vs. uniprot
Match: D7FZY9_ECTSI (Ribonuclease H n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY9_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 4.430e-21
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    4 QMMGRWRVSAPKLVGLHRDASDLVLREKLECTWHHVRRNLNARADLLANIAMDSKGTVQVFDPT 195
            QMMG+WRVSAPKLVGLHR AS++V + +L+CTWHHV R LN RADLLANIAMDSK   +++DP+
Sbjct:  123 QMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSKSMDEIYDPS 186
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BLAST of mRNA_H-elongata_contig76867.15355.1 vs. uniprot
Match: A0A6H5L4R0_9PHAE (RNase H type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R0_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.960e-21
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    4 QMMGRWRVSAPKLVGLHRDASDLVLREKLECTWHHVRRNLNARADLLANIAMDSKGTVQVFDPT 195
            QMMG+WRVSAPKLVGLHR AS++V + +L+CTWHHV R LN RADLLANIAMDSK   +++DP+
Sbjct:  146 QMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSKSMDEIYDPS 209
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76867.15355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZY9_ECTSI4.430e-2170.31Ribonuclease H n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5L4R0_9PHAE5.960e-2170.31RNase H type-1 domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76867contigH-elongata_contig76867:1407..2467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue1e-18
Seed eggNOG ortholog2880.D7FZY9
EggNOG free text desc.RNase H
EggNOG OGs2S89Z@2759,COG0328@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibonuclease H1, N-terminal
Ec32 orthologEc-22_003570.1
Exons2
Model size657
Cds size651
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76867.15355.1prot_H-elongata_contig76867.15355.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76867 1407..2461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931172.8729668-CDS-H-elongata_contig76867:1406..20031622931172.8729668-CDS-H-elongata_contig76867:1406..2003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76867 1407..2003 -
1691679728.135981-CDS-H-elongata_contig76867:1406..20031691679728.135981-CDS-H-elongata_contig76867:1406..2003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76867 1407..2003 -
1622931172.8945327-CDS-H-elongata_contig76867:2407..24611622931172.8945327-CDS-H-elongata_contig76867:2407..2461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76867 2408..2461 -
1691679728.1452875-CDS-H-elongata_contig76867:2407..24611691679728.1452875-CDS-H-elongata_contig76867:2407..2461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76867 2408..2461 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931172.9167507-UTR-H-elongata_contig76867:2461..24671622931172.9167507-UTR-H-elongata_contig76867:2461..2467Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76867 2462..2467 -
1691679728.1532001-UTR-H-elongata_contig76867:2461..24671691679728.1532001-UTR-H-elongata_contig76867:2461..2467Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76867 2462..2467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76867.15355.1

>prot_H-elongata_contig76867.15355.1 ID=prot_H-elongata_contig76867.15355.1|Name=mRNA_H-elongata_contig76867.15355.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp
MMGRWRVSAPKLVGLHRDASDLVLREKLECTWHHVRRNLNARADLLANIA
MDSKGTVQVFDPTVPPDLEDESAPIPTTASPPSNSSCEARAVALSPAKSA
SRRRPSAPRSCPLLSSPGASAASAFAVGEREAAAIAAAKAAYEAVAADAR
AEIAGSVEILGGGLDAPRPPGDAVGSRAKGASTKESKCGSDGGAEEQDTR
RFVIHVASWRKVADDFG
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mRNA from alignment at H-elongata_contig76867:1407..2467-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76867.15355.1 ID=mRNA_H-elongata_contig76867.15355.1|Name=mRNA_H-elongata_contig76867.15355.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1061bp|location=Sequence derived from alignment at H-elongata_contig76867:1407..2467- (Himanthalia elongata Himel1 dioecious)
CGGCAGATGATGGGGCGATGGCGCGTGTCGGCACCGAAGCTGGTGGGCCT
CCACCGCGACGTGAGTCTAGACAGGAAAGAACGCTTCCTTGGTATCGTTA
TTTGTATGTTTCTTCCTCAAGGTTGGGGTTGAGGTTGAGCTCTGAACTCG
TGTCTTAGAATTAGGTAAGCATTCTGTTCAAGTTTCGCCATAAATGAGCT
CTCCAGGTCTCGATCAATCAGGGCTCTTTTTTCTAATCCCATTCAATAAC
AAATATATATATATATATATATATATATATATATAGCGAGGCTATCCGCC
GCTAGTCGTAGGTGTCCCAAAACCACCTCCATTTTTTGTATTTCTCTGTG
AATATATCTGCTGACATTTCATTTCCCCCCTCCGCGCCTTCGACTTTTCG
ATTTCCAAATACCGCGAATAATCAAATACCGCCAATTCCGGCACTCTTGA
ACCTACGCCTTCAGGCGAGCGACTTGGTCCTGCGAGAAAAACTGGAGTGC
ACATGGCACCACGTGCGTCGTAACTTGAACGCCCGCGCCGACTTGCTGGC
CAACATCGCCATGGACAGCAAAGGAACCGTCCAGGTGTTCGACCCTACCG
TACCGCCAGACCTCGAGGATGAATCCGCCCCCATCCCCACGACCGCCTCC
CCACCGTCAAACTCCTCTTGCGAAGCGAGGGCCGTCGCTTTGAGTCCAGC
AAAGAGTGCGTCGCGGCGACGCCCTTCTGCCCCCCGAAGCTGCCCGCTGC
TTTCTTCCCCTGGTGCAAGCGCTGCATCCGCGTTCGCAGTCGGTGAGCGT
GAAGCCGCAGCCATTGCCGCAGCTAAAGCTGCCTACGAGGCCGTGGCAGC
CGATGCCCGCGCGGAGATCGCTGGCTCCGTTGAGATTCTAGGCGGCGGCT
TGGACGCCCCGAGGCCTCCTGGGGACGCCGTCGGTTCTCGGGCGAAGGGG
GCATCGACGAAGGAGAGCAAGTGCGGGTCAGACGGTGGGGCCGAAGAGCA
GGATACGCGGCGGTTCGTGATACACGTGGCTTCGTGGCGGAAAGTGGCAG
ATGATTTTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig76867:1407..2467-

>mRNA_H-elongata_contig76867.15355.1 ID=mRNA_H-elongata_contig76867.15355.1|Name=mRNA_H-elongata_contig76867.15355.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1302bp|location=Sequence derived from alignment at H-elongata_contig76867:1407..2467- (Himanthalia elongata Himel1 dioecious)
ATGATGGGGCGATGGCGCGTGTCGGCACCGAAGCTGGTGGGCCTCCACCG
CGACATGATGGGGCGATGGCGCGTGTCGGCACCGAAGCTGGTGGGCCTCC
ACCGCGACGCGAGCGACTTGGTCCTGCGAGAAAAACTGGAGTGCACATGG
CACCACGTGCGTCGTAACTTGAACGCCCGCGCCGACTTGCTGGCCAACAT
CGCCATGGACAGCAAAGGAACCGTCCAGGTGTTCGACCCTACCGTACCGC
CAGACCTCGAGGATGAATCCGCCCCCATCCCCACGACCGCCTCCCCACCG
TCAAACTCCTCTTGCGAAGCGAGGGCCGTCGCTTTGAGTCCAGCAAAGAG
TGCGTCGCGGCGACGCCCTTCTGCCCCCCGAAGCTGCCCGCTGCTTTCTT
CCCCTGGTGCAAGCGCTGCATCCGCGTTCGCAGTCGGTGAGCGTGAAGCC
GCAGCCATTGCCGCAGCTAAAGCTGCCTACGAGGCCGTGGCAGCCGATGC
CCGCGCGGAGATCGCTGGCTCCGTTGAGATTCTAGGCGGCGGCTTGGACG
CCCCGAGGCCTCCTGGGGACGCCGTCGGTTCTCGGGCGAAGGGGGCATCG
ACGAAGGAGAGCAAGTGCGGGTCAGACGGTGGGGCCGAAGAGCAGGATAC
GCGGCGGTTCGTGATACACGTGGCTTCGTGGCGGAAAGTGGCAGATGATT
TTGGGGCGAGCGACTTGGTCCTGCGAGAAAAACTGGAGTGCACATGGCAC
CACGTGCGTCGTAACTTGAACGCCCGCGCCGACTTGCTGGCCAACATCGC
CATGGACAGCAAAGGAACCGTCCAGGTGTTCGACCCTACCGTACCGCCAG
ACCTCGAGGATGAATCCGCCCCCATCCCCACGACCGCCTCCCCACCGTCA
AACTCCTCTTGCGAAGCGAGGGCCGTCGCTTTGAGTCCAGCAAAGAGTGC
GTCGCGGCGACGCCCTTCTGCCCCCCGAAGCTGCCCGCTGCTTTCTTCCC
CTGGTGCAAGCGCTGCATCCGCGTTCGCAGTCGGTGAGCGTGAAGCCGCA
GCCATTGCCGCAGCTAAAGCTGCCTACGAGGCCGTGGCAGCCGATGCCCG
CGCGGAGATCGCTGGCTCCGTTGAGATTCTAGGCGGCGGCTTGGACGCCC
CGAGGCCTCCTGGGGACGCCGTCGGTTCTCGGGCGAAGGGGGCATCGACG
AAGGAGAGCAAGTGCGGGTCAGACGGTGGGGCCGAAGAGCAGGATACGCG
GCGGTTCGTGATACACGTGGCTTCGTGGCGGAAAGTGGCAGATGATTTTG
GG
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