mRNA_H-elongata_contig76860.15354.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76860.15354.1
Unique NamemRNA_H-elongata_contig76860.15354.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76860.15354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76860contigH-elongata_contig76860:200..2673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size317
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931172.7522733-CDS-H-elongata_contig76860:200..4511622931172.7522733-CDS-H-elongata_contig76860:200..451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76860 201..451 -
1691679728.11165-CDS-H-elongata_contig76860:200..4511691679728.11165-CDS-H-elongata_contig76860:200..451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76860 201..451 -
1622931172.8046796-CDS-H-elongata_contig76860:2609..26731622931172.8046796-CDS-H-elongata_contig76860:2609..2673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76860 2610..2673 -
1691679728.1252446-CDS-H-elongata_contig76860:2609..26731691679728.1252446-CDS-H-elongata_contig76860:2609..2673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76860 2610..2673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76860.15354.1prot_H-elongata_contig76860.15354.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76860 201..2673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76860.15354.1

>prot_H-elongata_contig76860.15354.1 ID=prot_H-elongata_contig76860.15354.1|Name=mRNA_H-elongata_contig76860.15354.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
PNELRKLTTLKKLCLDDNNLVGQYSTNDFDDLTGNRLVLSRRSPMAEFRR
KRRDIFFSSSGKTESTGEDNKPKQAPIDMGAEEVGKYRPLERYKSKISTI
YADEG
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mRNA from alignment at H-elongata_contig76860:200..2673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76860.15354.1 ID=mRNA_H-elongata_contig76860.15354.1|Name=mRNA_H-elongata_contig76860.15354.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2474bp|location=Sequence derived from alignment at H-elongata_contig76860:200..2673- (Himanthalia elongata Himel1 dioecious)
CCGAATGAGCTGAGGAAACTCACCACCCTTAAAAAACTTTGCCTTGATGA
CAACAATCTGGTCGGTAAGGTCAATATGCGTCCTCTTCTATCGGAAAGAG
TGCATTTTTCAATGAAATATATCGTTAAAGTTCCAATTATTTTGCAGTAT
GATAATTTCCGAGCGTCGATTGTTGCTTCTTCCGAATATTGTTTGTTATA
ACAAATGTACACATGATGTATTTCTACTGCTGGAGTTGAATCAGTCACAG
GATTGTAGCCCGTTCCCCCCAGAAATGCCTTCTAGGTTTGATAATTATTT
TTGCCGTGTCCCTACACAGGGAATTCTAAAACGTTTTGGTGTCTGGTTAG
TGTTGTTTGCGTTCGCTTTTGGTTTCCGTCCCCCGAGAAATGCCTTCTAG
TTTTGATAATTGTTCTTGCCGTGTCCCTACACAGGGAATTCTAAAAAGTT
TTGGTTTCTGGTTAGTGTTGTTGGCGTTCGCTTTCGGTTTCCCCGCTCAG
TGTCCATAGCGGTGGTCGTTTGACCTACTAGTCTTTTGCCTTTGATAGGT
ACCCCTTAGTATCTGATATTTTCACATATTGCACATATTATGTTGTATGA
TATGATAATTGTTCTGCTTTTCTCATTCAACTATTCTGGTCGTAACGAGA
TACCTAAAAAAACTACCACCCTTATATGGACAAGCTTACTGGTAAGGTTT
CAAATGTATCAAATGTGTAATCAATTTCCCTGAAGTTATTTATACCCTGT
AGATTCAAGAACATATAAACTCAATGAAACCCTTCAACATCCACACCTTC
TCTACACTACGAGCGTTTAACTGCATCGTGTTGAATGCCAACTTCATATA
TTTGCGCCTAATGTTTAGCTTGTCGCGTCAATCGGCAACGTGGGGGTTAA
TCTAGGAACTATTACTTTACGTTTTCTATCACAAAGGTTTTTCGGACATT
GATGTTGTCTACTTTTATGTATTGTCAATATCATCGCCTGGTGCGTTTTG
TGTTTTTCTTTAGACTCACTTTGTGCACAGGGCCGATACCGAATAAGCTG
CGGAGATTTACCTTCCCTAGAATTTCTTCCCTTTTTGGAAGCGAACTAAG
AATTGGTTAGGCGAACATGCGTTCTATTGCATAGGGATATGTGTATTTTG
AAATGAACGGTAACCATTAATATCTCCTTAAAAATATTCAGTATTTTTCA
GTATGATTATTTCCGAACGTCGATTTATCCTTCCATCGAATATCATTCGT
CGAATATTGACCTATACTTAGTGTTTAAAATATTCTTCATATGATGTGTT
TCTAATGCTGGAGTCGAGTCAGGTAGGGGATTGTTGTCTATTCCGGCAAA
ATATTCTGGTATATAGGTGTCACTACAGGAAATTCAAAACGCTTTTGGTT
TTCGCTCAGTCTTCATGGCGTTCGTTTCACCTTCTAGTGTTATGTTTTTG
ATAAGGTACCCCTTCGTATTATTTTCACATATTGCACATTTTATGTTGTA
TGGTATGTGAATCGTTCGACAAGAAAATGAAGCATTTTCTTAATTCCACT
GTTTTGGTAGTCACGAGTAAAGAGAAGAACCCTCCCACCCAAATATGAAC
AAACTCATCGGTAAGGTCTAAATGTATCTGGTCTATCCGAAATACGCATA
CTGGACTTGCGAAATCAATTTTCCTAAAGTTATTTATATCCGGCAGATTC
ATGTATAAGAACTATTAATAACCCCAGGATCTCTAGTCCCATGGAAAAAG
TTTACATGTGCGTTTAGTAAGTTTTTCCTCAAGTAATACAATGTTGTGCA
GTCCGAACTTGTAACACACCTGGTGGCGAAGGACGCTCGCCGGTATAACT
TTATCACGCATGGCCACTGTGCCAATAATGGGTGCGGGAAAAGAGAGGCA
CACAGAAATTGGTCCATTGGGTTACCTGAATAGGCTTCACCCGTTACTCA
AGCTACATTCATGGCTACTGGCTCAATGTCAACGGACTATTGATGGAAAA
CAAGAGGATCGATATTATCCCCGGAGTACACACCAGATTCAGCCTGGGTT
GAGAGAATGAGCAGGCTGACACGGGACAGGACTGCCGAGCCTGTCTCGCG
AGACCAAATTCTCAGGCGCAAATGGGGACAAGAAAAGTAAAAAATCCATG
TTCAGCTGACCACAAGCAGGAGGCAACCTAATCCGGTTGATATTTACTCT
GCTGTATGTGATGACCTCACAGGTCAATATTCGACGAATGATTTTGATGA
CCTCACAGGCAATCGACTGGTCCTATCTCGTCGATCGCCGATGGCAGAGT
TTCGACGTAAGAGGCGTGATATTTTTTTTAGTAGTTCGGGGAAGACGGAA
TCAACAGGCGAAGATAATAAGCCAAAACAAGCCCCCATCGACATGGGTGC
AGAAGAAGTGGGAAAATATCGGCCTCTTGAAAGATACAAATCTAAAATTT
CAACCATTTACGCGGATGAGGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig76860:200..2673-

>mRNA_H-elongata_contig76860.15354.1 ID=mRNA_H-elongata_contig76860.15354.1|Name=mRNA_H-elongata_contig76860.15354.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig76860:200..2673- (Himanthalia elongata Himel1 dioecious)
CCGAATGAGCTGAGGAAACTCACCACCCTTAAAAAACTTTGCCTTGATGA
CAACAATCTGGTCGCCGAATGAGCTGAGGAAACTCACCACCCTTAAAAAA
CTTTGCCTTGATGACAACAATCTGGTCGGTCAATATTCGACGAATGATTT
TGATGACCTCACAGGCAATCGACTGGTCCTATCTCGTCGATCGCCGATGG
CAGAGTTTCGACGTAAGAGGCGTGATATTTTTTTTAGTAGTTCGGGGAAG
ACGGAATCAACAGGCGAAGATAATAAGCCAAAACAAGCCCCCATCGACAT
GGGTGCAGAAGAAGTGGGAAAATATCGGCCTCTTGAAAGATACAAATCTA
AAATTTCAACCATTTACGCGGATGAGGGCGTCAATATTCGACGAATGATT
TTGATGACCTCACAGGCAATCGACTGGTCCTATCTCGTCGATCGCCGATG
GCAGAGTTTCGACGTAAGAGGCGTGATATTTTTTTTAGTAGTTCGGGGAA
GACGGAATCAACAGGCGAAGATAATAAGCCAAAACAAGCCCCCATCGACA
TGGGTGCAGAAGAAGTGGGAAAATATCGGCCTCTTGAAAGATACAAATCT
AAAATTTCAACCATTTACGCGGATGAGGGC
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