mRNA_H-elongata_contig76824.15351.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76824.15351.1
Unique NamemRNA_H-elongata_contig76824.15351.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76824.15351.1 vs. uniprot
Match: D8LIR1_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR1_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 4.010e-52
Identity = 86/99 (86.87%), Postives = 93/99 (93.94%), Query Frame = 1 
Query:    7 RSDRPMVHVSVEGIMSKWYGESEKKLSAIFEACEEMGGAIIFIDEIDAMAGSRAKCNMHEATRRILSVILQKVEGFEKGSKNTLICATNRKDDLDAALL 303
            RSDRPMVHV VE IMSKWYGESEKKLSAIF+AC+EMGGAIIFIDE+DA+AGSR+   MHEATRR+LSVILQKVEGFEKGSKN LICATNRKDDLDAAL+
Sbjct:  188 RSDRPMVHVPVENIMSKWYGESEKKLSAIFDACDEMGGAIIFIDEVDALAGSRSTGGMHEATRRVLSVILQKVEGFEKGSKNILICATNRKDDLDAALI 286
[Close]
BLAST of mRNA_H-elongata_contig76824.15351.1 vs. uniprot
Match: A0A6H5KXP7_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXP7_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 7.800e-51
Identity = 86/99 (86.87%), Postives = 93/99 (93.94%), Query Frame = 1 
Query:    7 RSDRPMVHVSVEGIMSKWYGESEKKLSAIFEACEEMGGAIIFIDEIDAMAGSRAKCNMHEATRRILSVILQKVEGFEKGSKNTLICATNRKDDLDAALL 303
            RSDRPMVHV VE IMSKWYGESEKKLSAIF+AC+EMGGAIIFIDE+DA+AGSR+   MHEATRR+LSVILQKVEGFEKGSKN LICATNRKDDLDAAL+
Sbjct:  374 RSDRPMVHVPVENIMSKWYGESEKKLSAIFDACDEMGGAIIFIDEVDALAGSRSTGGMHEATRRVLSVILQKVEGFEKGSKNILICATNRKDDLDAALI 472
[Close]
BLAST of mRNA_H-elongata_contig76824.15351.1 vs. uniprot
Match: A0A7S4DAA4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAA4_HETAK)

HSP 1 Score: 160 bits (404), Expect = 1.030e-46
Identity = 75/100 (75.00%), Postives = 89/100 (89.00%), Query Frame = 1 
Query:    4 NRSDRPMVHVSVEGIMSKWYGESEKKLSAIFEACEEMGGAIIFIDEIDAMAGSRAKCNMHEATRRILSVILQKVEGFEKGSKNTLICATNRKDDLDAALL 303
            NR+D+PMVHV+VE IMSKWYGESEKKL+ IFEAC+E+GGAIIFIDEIDA+A SR    MHEATRR+LSV+LQ++EGF  G +NTL+CATNR+ DLDAALL
Sbjct:   85 NRADKPMVHVNVESIMSKWYGESEKKLAQIFEACDELGGAIIFIDEIDALATSRDTGQMHEATRRVLSVVLQRIEGFRGGGQNTLVCATNRRQDLDAALL 184
[Close]
BLAST of mRNA_H-elongata_contig76824.15351.1 vs. uniprot
Match: A0A3F2S3V9_9STRA (AAA domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3V9_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.880e-39
Identity = 65/95 (68.42%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:   19 PMVHVSVEGIMSKWYGESEKKLSAIFEACEEMGGAIIFIDEIDAMAGSRAKCNMHEATRRILSVILQKVEGFEKGSKNTLICATNRKDDLDAALL 303
            PM+H+ +E ++SKWYG+SEKK+SAIF+ACE++ GAIIFIDEIDA+AG R+   MHEA+RRILSV+LQKVEGF    K T++CATNRK DLDAAL+
Sbjct:  235 PMIHIPIESVVSKWYGDSEKKMSAIFDACEKLDGAIIFIDEIDALAGDRSGGTMHEASRRILSVLLQKVEGFASAKKTTVVCATNRKQDLDAALI 329
[Close]
BLAST of mRNA_H-elongata_contig76824.15351.1 vs. uniprot
Match: W2N6G7_PHYPR (AAA domain-containing protein n=13 Tax=Phytophthora parasitica TaxID=4792 RepID=W2N6G7_PHYPR)

HSP 1 Score: 144 bits (363), Expect = 3.810e-39
Identity = 65/95 (68.42%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:   19 PMVHVSVEGIMSKWYGESEKKLSAIFEACEEMGGAIIFIDEIDAMAGSRAKCNMHEATRRILSVILQKVEGFEKGSKNTLICATNRKDDLDAALL 303
            PM+H+ +E ++SKWYG+SEKK+SAIF+ACE++ GAIIFIDEIDA+AG R+   MHEA+RRILSV+LQKVEGF    K T++CATNRK DLDAAL+
Sbjct:  300 PMIHIPIESVVSKWYGDSEKKMSAIFDACEKLDGAIIFIDEIDALAGDRSGGTMHEASRRILSVLLQKVEGFASAKKTTVVCATNRKQDLDAALI 394
[Close]
BLAST of mRNA_H-elongata_contig76824.15351.1 vs. uniprot
Match: F0VZC5_9STRA (ATPase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZC5_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.120e-38
Identity = 69/95 (72.63%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:   19 PMVHVSVEGIMSKWYGESEKKLSAIFEACEEMGGAIIFIDEIDAMAGSRAKCNMHEATRRILSVILQKVEGFEKGSKNTLICATNRKDDLDAALL 303
            PM+H+ VE ++SKWYGESEKKLS IF+ACE++ GAIIFIDEIDA+AG R+   +HEA+RRILSV+LQKVEGFE   K T+ICATNRK+DLDAALL
Sbjct:  358 PMIHIPVEAVVSKWYGESEKKLSTIFDACEQLDGAIIFIDEIDALAGDRSG-GIHEASRRILSVLLQKVEGFESAQKTTVICATNRKEDLDAALL 451
[Close]
BLAST of mRNA_H-elongata_contig76824.15351.1 vs. uniprot
Match: A0A0N7L5Q2_PLAHL (Aaa-type atpase family protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L5Q2_PLAHL)

HSP 1 Score: 144 bits (362), Expect = 1.360e-38
Identity = 66/95 (69.47%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:   19 PMVHVSVEGIMSKWYGESEKKLSAIFEACEEMGGAIIFIDEIDAMAGSRAKCNMHEATRRILSVILQKVEGFEKGSKNTLICATNRKDDLDAALL 303
            PMVH+ +E ++SKWYG+SEKK+SAIF+ACE++ GAIIFIDEIDA+AG R+   MHEA+RRILSV+LQKVEGF    K T++CATNRK DLDAAL+
Sbjct:  316 PMVHLPIESVVSKWYGDSEKKMSAIFDACEKLDGAIIFIDEIDALAGDRSGGTMHEASRRILSVLLQKVEGFASAKKTTVVCATNRKQDLDAALI 410
[Close]
BLAST of mRNA_H-elongata_contig76824.15351.1 vs. uniprot
Match: A0A8K1CTS6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTS6_PYTOL)

HSP 1 Score: 144 bits (364), Expect = 1.610e-38
Identity = 66/95 (69.47%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:   19 PMVHVSVEGIMSKWYGESEKKLSAIFEACEEMGGAIIFIDEIDAMAGSRAKCNMHEATRRILSVILQKVEGFEKGSKNTLICATNRKDDLDAALL 303
            PM+H+ +E ++SKWYG+SEKK+SAIF+ACE+  GAIIFIDEIDA+AG RA  +MHEA+RRILSV+LQKVEGF    K T+ICATNRK DLD+AL+
Sbjct:  394 PMIHIPIESVVSKWYGDSEKKMSAIFDACEKFDGAIIFIDEIDALAGDRAHGSMHEASRRILSVLLQKVEGFASAKKTTVICATNRKQDLDSALI 488
[Close]
BLAST of mRNA_H-elongata_contig76824.15351.1 vs. uniprot
Match: G4YPN9_PHYSP (AAA domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=G4YPN9_PHYSP)

HSP 1 Score: 144 bits (363), Expect = 2.110e-38
Identity = 65/95 (68.42%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:   19 PMVHVSVEGIMSKWYGESEKKLSAIFEACEEMGGAIIFIDEIDAMAGSRAKCNMHEATRRILSVILQKVEGFEKGSKNTLICATNRKDDLDAALL 303
            PM+H+ +E ++SKWYG+SEKK+SAIF+ACE++ GAIIFIDEIDA+AG R+   MHEA+RRILSV+LQKVEGF    K T++CATNRK DLDAAL+
Sbjct:  387 PMIHIPIESVVSKWYGDSEKKMSAIFDACEKLDGAIIFIDEIDALAGDRSGGTMHEASRRILSVLLQKVEGFASAKKTTVVCATNRKQDLDAALI 481
[Close]
BLAST of mRNA_H-elongata_contig76824.15351.1 vs. uniprot
Match: A0A3M6VTY0_9STRA (AAA domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VTY0_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.150e-38
Identity = 65/95 (68.42%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:   19 PMVHVSVEGIMSKWYGESEKKLSAIFEACEEMGGAIIFIDEIDAMAGSRAKCNMHEATRRILSVILQKVEGFEKGSKNTLICATNRKDDLDAALL 303
            PM+H+ +E ++SKWYG+SEKK+SAIF+ACE++ GAIIFIDEIDA+AG R+   MHEA+RRILSV+LQKVEGF    K T++CATNRK DLDAAL+
Sbjct:  390 PMIHIPIESVVSKWYGDSEKKMSAIFDACEKLNGAIIFIDEIDALAGDRSGGTMHEASRRILSVLLQKVEGFASAKKTTVVCATNRKQDLDAALV 484
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76824.15351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIR1_ECTSI4.010e-5286.87AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KXP7_9PHAE7.800e-5186.87AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S4DAA4_HETAK1.030e-4675.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3F2S3V9_9STRA2.880e-3968.42AAA domain-containing protein n=3 Tax=Phytophthora... [more]
W2N6G7_PHYPR3.810e-3968.42AAA domain-containing protein n=13 Tax=Phytophthor... [more]
F0VZC5_9STRA1.120e-3872.63ATPase putative n=1 Tax=Albugo laibachii Nc14 TaxI... [more]
A0A0N7L5Q2_PLAHL1.360e-3869.47Aaa-type atpase family protein n=1 Tax=Plasmopara ... [more]
A0A8K1CTS6_PYTOL1.610e-3869.47Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
G4YPN9_PHYSP2.110e-3868.42AAA domain-containing protein n=9 Tax=Phytophthora... [more]
A0A3M6VTY0_9STRA2.150e-3868.42AAA domain-containing protein n=2 Tax=Peronospora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76824contigH-elongata_contig76824:539..1327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue6.8e-42
Seed eggNOG ortholog2880.D8LIR1
EggNOG free text desc.ATP binding
EggNOG OGsCOG0464@1,KOG0730@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931172.3150465-CDS-H-elongata_contig76824:538..7601622931172.3150465-CDS-H-elongata_contig76824:538..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76824 539..760 +
1691679728.000079-CDS-H-elongata_contig76824:538..7601691679728.000079-CDS-H-elongata_contig76824:538..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76824 539..760 +
1622931172.3293297-CDS-H-elongata_contig76824:1240..13271622931172.3293297-CDS-H-elongata_contig76824:1240..1327Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76824 1241..1327 +
1691679728.0125558-CDS-H-elongata_contig76824:1240..13271691679728.0125558-CDS-H-elongata_contig76824:1240..1327Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76824 1241..1327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76824.15351.1prot_H-elongata_contig76824.15351.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76824 539..1327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76824.15351.1

>prot_H-elongata_contig76824.15351.1 ID=prot_H-elongata_contig76824.15351.1|Name=mRNA_H-elongata_contig76824.15351.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MNRSDRPMVHVSVEGIMSKWYGESEKKLSAIFEACEEMGGAIIFIDEIDA
MAGSRAKCNMHEATRRILSVILQKVEGFEKGSKNTLICATNRKDDLDAAL
LR*
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mRNA from alignment at H-elongata_contig76824:539..1327+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76824.15351.1 ID=mRNA_H-elongata_contig76824.15351.1|Name=mRNA_H-elongata_contig76824.15351.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=789bp|location=Sequence derived from alignment at H-elongata_contig76824:539..1327+ (Himanthalia elongata Himel1 dioecious)
ATGAACAGGTCAGACCGGCCGATGGTGCACGTGTCCGTGGAGGGCATTAT
GAGCAAGTGGTACGGAGAGTCGGAGAAGAAGCTGAGCGCAATCTTCGAGG
CCTGCGAGGAGATGGGCGGAGCGATCATCTTCATCGACGAGATTGACGCC
ATGGCCGGGTCGAGGGCCAAGTGCAACATGCACGAGGCCACCCGGCGCAT
CCTCTCTGTCATCCTCCAGAAGGTGGGGTGCTCACGGACAAGCAAGCGAG
CAAGCCCCGCGGCTTTTCCCCACCTAGATCGGAACCCCCTTGACCCTTCT
CTGTTGTGATTGGTCAAGTCCTCCCGAGATATAAAATGTAGTATGCGGTT
ATGATATAGGGTTGGGAGACGGGGGGGGGGTTATCGGGGGCGGTATGAGT
GATATATAGACTAAAAATGTGCTGTTGTGTCGTAACGTTGGGAGGCGTTT
TTGATATAATAGTAACATCGGGACTTTGATTGATATATTAGTAACATCGG
GAGGCGTTTTTTATCAAAGGTAATTTCTTAATATGTACACAGAGTTATCA
GATGTGCAAACATGTCACGTTGGAAGGCGTTTTTGTTGCGTGCATCGTCT
TGCGCACGGTAGAAGAGAGAGAGAGAGAGAGAAACGATCGAAGAAGCAGC
GCTGATTGTTGATGCTCGTGTGTGTGTGTCCTCTCCCCTTAAAACAAAAC
AGGTCGAAGGGTTCGAAAAGGGTTCGAAGAACACCCTCATTTGTGCCACC
AACCGCAAAGATGACCTGGACGCAGCACTCCTCAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig76824:539..1327+

>mRNA_H-elongata_contig76824.15351.1 ID=mRNA_H-elongata_contig76824.15351.1|Name=mRNA_H-elongata_contig76824.15351.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig76824:539..1327+ (Himanthalia elongata Himel1 dioecious)
ATGAACAGGTCAGACCGGCCGATGGTGCACGTGTCCGTGGAGGGCATTAT
GAGCAAGTGGTACGGAGAGTCGGAGAAGAAGCTGAGCGCAATCTTCGAGG
CCTGCGAGGAGATGGGCGGAGCGATCATCTTCATCGACGAGATTGACGCC
ATGGCCGGGTCGAGGGCCAAGTGCAACATGCACGAGGCCACCCGGCGCAT
CCTCTCTGTCATCCTCCAGAAGATGAACAGGTCAGACCGGCCGATGGTGC
ACGTGTCCGTGGAGGGCATTATGAGCAAGTGGTACGGAGAGTCGGAGAAG
AAGCTGAGCGCAATCTTCGAGGCCTGCGAGGAGATGGGCGGAGCGATCAT
CTTCATCGACGAGATTGACGCCATGGCCGGGTCGAGGGCCAAGTGCAACA
TGCACGAGGCCACCCGGCGCATCCTCTCTGTCATCCTCCAGAAGGTCGAA
GGGTTCGAAAAGGGTTCGAAGAACACCCTCATTTGTGCCACCAACCGCAA
AGATGACCTGGACGCAGCACTCCTCAGGTAAGTCGAAGGGTTCGAAAAGG
GTTCGAAGAACACCCTCATTTGTGCCACCAACCGCAAAGATGACCTGGAC
GCAGCACTCCTCAGGTAA
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