mRNA_H-elongata_contig76756.15345.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76756.15345.1
Unique NamemRNA_H-elongata_contig76756.15345.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76756.15345.1 vs. uniprot
Match: D8LBJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ7_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 1.010e-59
Identity = 114/156 (73.08%), Postives = 119/156 (76.28%), Query Frame = 1 
Query:    1 GPEWFLSFLLRALEAYRPLLV-------------------GGHAGGVDRLAYFARGLALLARRRLRAQLAPAAADSSLLSHTVEEALAFDQYLDREADYAECPTRFPGRTWPRCVEVFAQDGARFCRWMESDAAAAEAKLAEAAAAPGAWRAVGWK 411
            GPEWFLSFLLRALEAYRPLL+                   G   G VD LAYFARGLALLARRRLRAQL  AAAD SLLSHTVEEALAFD+ LDREA YAECP RFP +TWPRCVEVFAQ   RF RWMESDA AA+AKLAEAAA+PGAWRAV WK
Sbjct:  308 GPEWFLSFLLRALEAYRPLLLLLALPPPAEGAPELEAREAGRGGGSVDPLAYFARGLALLARRRLRAQLGEAAADESLLSHTVEEALAFDRCLDREAGYAECPARFPHQTWPRCVEVFAQGEQRFERWMESDAKAAKAKLAEAAASPGAWRAVDWK 463
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BLAST of mRNA_H-elongata_contig76756.15345.1 vs. uniprot
Match: A0A6H5JNY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY6_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 1.060e-59
Identity = 111/155 (71.61%), Postives = 116/155 (74.84%), Query Frame = 1 
Query:    4 PEWFLSFLLRALEAYRPLLV-------------------GGHAGGVDRLAYFARGLALLARRRLRAQLAPAAADSSLLSHTVEEALAFDQYLDREADYAECPTRFPGRTWPRCVEVFAQDGARFCRWMESDAAAAEAKLAEAAAAPGAWRAVGWK 411
            PEWFLSFLLRALEAYRPLL+                   G   G VD LAYFARGLALLARRRLRAQL   AAD SLLSHTVEEALAFD+ LDREA YAECP RFP +TWPRCVEVFAQ   RF RWMESDA AA+AKLAEA A+PGAWRAV WK
Sbjct:  406 PEWFLSFLLRALEAYRPLLLLLELPRPAEGAPELEAREAGWGGGSVDPLAYFARGLALLARRRLRAQLGAVAADESLLSHTVEEALAFDRCLDREAGYAECPARFPRQTWPRCVEVFAQGEQRFERWMESDAKAAKAKLAEAVASPGAWRAVDWK 560
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BLAST of mRNA_H-elongata_contig76756.15345.1 vs. uniprot
Match: A0A4D9D6Y1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6Y1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.060e-15
Identity = 55/152 (36.18%), Postives = 70/152 (46.05%), Query Frame = 1 
Query:    4 PEWFLSFLLRALEAYRPLLVGGHAGGV--------------DRLAYFARGLALLARRRLRAQLAPAAADSSLLSHTVEEALAFDQYLDREADYAECPT--------RFPGRTWPRCVEVFAQDGARFCRWMESDAAAAEAKLAEAAAAPGAW 393
            PEW  +FLLRAL+  +  L    A                   LA+FAR LAL ARR++RA L   + +   L+   EEALAFD+ LD E  Y  C +            + WPR  +V A    R  RW E +AA     L+    APGAW
Sbjct:  328 PEWVFAFLLRALQLSKSALTDARAEECVGKFMPEVSACMPHPLLAFFARDLALAARRKMRAMLLGGSTEDRALARLGEEALAFDKALDEETGYHRCASPAGVGVVGMVQRQGWPRATDVLAASRQRLERWAEVEAAWVLGSLSRGCEAPGAW 479
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76756.15345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LBJ7_ECTSI1.010e-5973.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNY6_9PHAE1.060e-5971.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9D6Y1_9STRA8.060e-1536.18Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76756contigH-elongata_contig76756:422..2023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue5.7e-52
Seed eggNOG ortholog2880.D8LBJ7
KEGG koko:K20474
EggNOG free text desc.regulation of signal transduction involved in mitotic G2 DNA damage checkpoint
EggNOG OGsKOG2218@1,KOG2218@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size411
Cds size411
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76756.15345.1prot_H-elongata_contig76756.15345.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76756 422..2023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931171.6729462-CDS-H-elongata_contig76756:421..5511622931171.6729462-CDS-H-elongata_contig76756:421..551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76756 422..551 -
1691679727.6996458-CDS-H-elongata_contig76756:421..5511691679727.6996458-CDS-H-elongata_contig76756:421..551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76756 422..551 -
1622931171.6844218-CDS-H-elongata_contig76756:1102..12551622931171.6844218-CDS-H-elongata_contig76756:1102..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76756 1103..1255 -
1691679727.7144878-CDS-H-elongata_contig76756:1102..12551691679727.7144878-CDS-H-elongata_contig76756:1102..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76756 1103..1255 -
1622931171.699398-CDS-H-elongata_contig76756:1895..20231622931171.699398-CDS-H-elongata_contig76756:1895..2023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76756 1896..2023 -
1691679727.723854-CDS-H-elongata_contig76756:1895..20231691679727.723854-CDS-H-elongata_contig76756:1895..2023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76756 1896..2023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76756.15345.1

>prot_H-elongata_contig76756.15345.1 ID=prot_H-elongata_contig76756.15345.1|Name=mRNA_H-elongata_contig76756.15345.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
GPEWFLSFLLRALEAYRPLLVGGHAGGVDRLAYFARGLALLARRRLRAQL
APAAADSSLLSHTVEEALAFDQYLDREADYAECPTRFPGRTWPRCVEVFA
QDGARFCRWMESDAAAAEAKLAEAAAAPGAWRAVGWK
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mRNA from alignment at H-elongata_contig76756:422..2023-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76756.15345.1 ID=mRNA_H-elongata_contig76756.15345.1|Name=mRNA_H-elongata_contig76756.15345.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1602bp|location=Sequence derived from alignment at H-elongata_contig76756:422..2023- (Himanthalia elongata Himel1 dioecious)
GGGCCGGAGTGGTTCTTGTCCTTTCTCCTACGAGCGCTGGAGGCGTACCG
CCCGTTGCTCGTCGGTGGCCACGCTGGAGGGGTGGACCGCCTGGCGTACT
TCGCCAGGGGTCTCGCCCTCCTCGCAAGGTGCGCGCATCGCGTCGTTTAC
AATTCGGATTGCGCGGGACAAAGGGAACGGCGACGGGGAAGCGTTGCGGT
CGTCGCGGGGTCCTCGGAAGTTTTTGCCCAGAAAACGATCACCCTGTTAA
ATAAATCCCCTTTCGACAACCGAGGAGGGGGTGGGCGAGAGAGCGAGCGA
GCTACCGATTGTTGCCCCTTATTTATTTCGTTTTTTTTTCTCCCAGCGCA
CCGTACCTGCTCTATGCATGAAGAGCTCATATGATGTATCCGTCCCCTTA
GTCGCGGTGCTTGTGGGTGTGCATATCCGTATGCACCTTGACAGATCTTC
GCACGTCGACTGCAGTTTGTAGAGAGACGACGGGGCGAAAATATCGTTAG
GCAGGAAGGCGAACCGCCCGCGTTCCCGCGTGCGCATGTATGCGTATGTA
TATTTACGTACCCGTTGGGTGTCGCTCGGATCTATTATTGTTTCGGCTGT
TCACATGCGCCCGGCACCGGAATCAACGTCCTGCGGTAACGTTTTAGTTT
GGTTTGGTTTCATTGTTTTGGCACCTCACGCTTTACCCCCCCGGCTCCCC
CCCCCGCATGGCGCGTCATCGCTGTTTCGTCATGACCGTACATCTCGTGG
CGTGCCTCGTCCCGGCAGACGTCGACTGCGCGCCCAGCTCGCCCCGGCCG
CCGCGGATAGTTCCCTTCTGTCACACACGGTGGAGGAGGCCCTCGCGTTC
GACCAGTACCTTGATCGAGAAGCGGACTACGCGGAGTGTCCCACGAGATT
CCCGGGGCGAACGTGGCCGAGGTACGTTGATTTGAAGGGTCGGCGGCGGC
GACGGGGGGAGGGGGAGGGGAGCGAGGAGACAAGGGTTATTTTTTTTCTT
CCCTATAGACTTTTATATTTTTGTTGATATCTATTGTTCGTTGTTATATG
ATGCTGTATGCTGTTGGTTTTGGTATTGCTGGTGTCAGGAAGCGAGGGCT
ATCGAGGGAGGACGAGGGTACCCAGCAATACCCGCGTCCGACGACCAGTC
ATTCGACACATCCTAACCGATACAATTTTTGTTCGGCCAGTTTTCTGCAT
TGCTGTCGCTCTAGAGGAAGTGGTGGTCGGGGAGGGGGGGGGAATGGGAT
CAACACGGGTCAACACGACAGCACAAAGAGAGACATAGGTTATAACATGG
TTACGATGGTTGTGGTAACCTGGCTGCGCGTGTTTCATCTGCCGTCCTTG
ATGTCATTGTATCTATCTGCCGTCCTTGAATCTCCGGAGAATCGTGCCGA
TGTATGCTTTAACTTTTTGACCACATAGTACTGTCTGAACCTCCCCGCCT
CCTCCCCTCCTATCCGGTGGAGGTGCGTCGAGGTTTTCGCCCAAGACGGC
GCGCGATTCTGTCGGTGGATGGAGTCCGACGCTGCGGCAGCGGAGGCGAA
GCTTGCCGAAGCTGCGGCAGCGCCGGGCGCCTGGCGAGCGGTCGGTTGGA
AG
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Coding sequence (CDS) from alignment at H-elongata_contig76756:422..2023-

>mRNA_H-elongata_contig76756.15345.1 ID=mRNA_H-elongata_contig76756.15345.1|Name=mRNA_H-elongata_contig76756.15345.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig76756:422..2023- (Himanthalia elongata Himel1 dioecious)
GGGCCGGAGTGGTTCTTGTCCTTTCTCCTACGAGCGCTGGAGGCGTACCG
CCCGTTGCTCGTCGGTGGCCACGCTGGAGGGGTGGACCGCCTGGCGTACT
TCGCCAGGGGTCTCGCCCTCCTCGCAAGGGGCCGGAGTGGTTCTTGTCCT
TTCTCCTACGAGCGCTGGAGGCGTACCGCCCGTTGCTCGTCGGTGGCCAC
GCTGGAGGGGTGGACCGCCTGGCGTACTTCGCCAGGGGTCTCGCCCTCCT
CGCAAGACGTCGACTGCGCGCCCAGCTCGCCCCGGCCGCCGCGGATAGTT
CCCTTCTGTCACACACGGTGGAGGAGGCCCTCGCGTTCGACCAGTACCTT
GATCGAGAAGCGGACTACGCGGAGTGTCCCACGAGATTCCCGGGGCGAAC
GTGGCCGAGACGTCGACTGCGCGCCCAGCTCGCCCCGGCCGCCGCGGATA
GTTCCCTTCTGTCACACACGGTGGAGGAGGCCCTCGCGTTCGACCAGTAC
CTTGATCGAGAAGCGGACTACGCGGAGTGTCCCACGAGATTCCCGGGGCG
AACGTGGCCGAGGTGCGTCGAGGTTTTCGCCCAAGACGGCGCGCGATTCT
GTCGGTGGATGGAGTCCGACGCTGCGGCAGCGGAGGCGAAGCTTGCCGAA
GCTGCGGCAGCGCCGGGCGCCTGGCGAGCGGTCGGTTGGAAGGTGCGTCG
AGGTTTTCGCCCAAGACGGCGCGCGATTCTGTCGGTGGATGGAGTCCGAC
GCTGCGGCAGCGGAGGCGAAGCTTGCCGAAGCTGCGGCAGCGCCGGGCGC
CTGGCGAGCGGTCGGTTGGAAG
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