mRNA_H-elongata_contig76713.15342.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76713.15342.1
Unique NamemRNA_H-elongata_contig76713.15342.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 4.530e-19
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 285
            ++ ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD E G L I+Q  + ++MV ++ + + S IPA+PG DL  + E + GG
Sbjct:   73 IIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG 167
[Close]
BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.100e-18
Identity = 37/95 (38.95%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 285
            ++ ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD + G L I+Q  + ++MV ++ + + S IPA+PG DL  + E + GG
Sbjct:    9 IIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDADAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPKREDEEGG 103
[Close]
BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5L663_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L663_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.530e-18
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 285
            +V ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD+E G L I+   + ++MV ++ + + S IPASPG+DL  + +   GG
Sbjct:   65 IVVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDFEAGTLRISHAAYIDSMVKRFDVQSASRIPASPGVDLGPKRDDMKGG 159
[Close]
BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.380e-18
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 285
            ++ ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD E G L I+Q  + ++MV ++ + + S IPA+PG DL  + E + GG
Sbjct:  440 IIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGG 534
[Close]
BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 6.520e-18
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 285
            ++ ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD E G L I+Q  + ++MV ++ + + S IPA+PG DL  + E + GG
Sbjct:  216 IIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG 310
[Close]
BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5JBN2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.410e-18
Identity = 37/95 (38.95%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 285
            ++ ++VDDI+V+G ++ C+E  + L ++FP ++ GE + + GCA ERD E G L+I+Q  + ++MV ++ + + S IPASPG+DL  + + + GG
Sbjct:  659 IIVIYVDDILVAGSDEDCEELLASLNKKFPTRNVGECEWFDGCAIERDVEAGNLKISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDNENGG 753
[Close]
BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.520e-18
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 285
            ++ ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD E G L I+Q  + ++MV ++ + + S IPA+PG DL  + E + GG
Sbjct:  929 IIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG 1023
[Close]
BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.520e-18
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 285
            ++ ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD E G L I+Q  + ++MV ++ + + S IPA+PG DL  + E + GG
Sbjct: 1038 IIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG 1132
[Close]
BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.580e-18
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 285
            ++ ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD E G L I+Q  + ++MV ++ + + S IPA+PG DL  + E + GG
Sbjct: 1308 IIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG 1402
[Close]
BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.590e-18
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWENGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGG 285
            ++ ++VDDI+V+G ++ C+E  + L ++FP K+ GE + + GCA ERD E G L I+Q  + ++MV ++ + + S IPA+PG DL  + E + GG
Sbjct: 1328 IIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG 1422
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76713.15342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRS6_9PHAE4.530e-1940.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBH1_9PHAE1.100e-1838.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L663_9PHAE2.530e-1840.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K274_9PHAE5.380e-1840.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTL3_9PHAE6.520e-1840.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JBN2_9PHAE7.410e-1838.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE7.520e-1840.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE7.520e-1840.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE7.580e-1840.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE7.590e-1840.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76713contigH-elongata_contig76713:50..346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size299
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931171.4769485-CDS-H-elongata_contig76713:49..3461622931171.4769485-CDS-H-elongata_contig76713:49..346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76713 50..346 +
1691679727.622558-CDS-H-elongata_contig76713:49..3461691679727.622558-CDS-H-elongata_contig76713:49..346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76713 50..346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76713.15342.1prot_H-elongata_contig76713.15342.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76713 50..346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76713.15342.1

>prot_H-elongata_contig76713.15342.1 ID=prot_H-elongata_contig76713.15342.1|Name=mRNA_H-elongata_contig76713.15342.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MVGVHVDDIIVSGENDVCDEFFSELKERFPVKHQGELKMYTGCAFERDWE
NGILEINQKTFAENMVTQYGITAVSNIPASPGMDLCLRVEGKTGGNDEF
back to top

mRNA from alignment at H-elongata_contig76713:50..346+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76713.15342.1 ID=mRNA_H-elongata_contig76713.15342.1|Name=mRNA_H-elongata_contig76713.15342.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at H-elongata_contig76713:50..346+ (Himanthalia elongata Himel1 dioecious)
ATGGTTGGGGTACATGTCGATGATATAATTGTATCGGGAGAGAACGATGT
CTGTGATGAGTTCTTCAGTGAGTTGAAAGAGAGATTTCCTGTGAAACACC
AAGGGGAGTTAAAGATGTACACCGGCTGTGCATTTGAACGTGATTGGGAG
AACGGGATCCTAGAAATAAACCAAAAGACGTTTGCGGAAAACATGGTTAC
ACAGTACGGAATCACCGCTGTTTCCAATATTCCAGCGAGTCCTGGAATGG
ATCTCTGTCTTAGAGTTGAAGGGAAAACTGGTGGCAATGATGAGTTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig76713:50..346+

>mRNA_H-elongata_contig76713.15342.1 ID=mRNA_H-elongata_contig76713.15342.1|Name=mRNA_H-elongata_contig76713.15342.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig76713:50..346+ (Himanthalia elongata Himel1 dioecious)
ATGGTTGGGGTACATGTCGATGATATAATTGTATCGGGAGAGAACGATGT
CTGTGATGAGTTCTTCAGTGAGTTGAAAGAGAGATTTCCTGTGAAACACC
AAGGGGAGTTAAAGATGTACACCGGCTGTGCATTTGAACGTGATTGGGAG
AACGGGATCCTAGAAATAAACCAAAAGACGTTTGCGGAAAACATGGTTAC
ACAGTACGGAATCACCGCTGTTTCCAATATTCCAGCGAGTCCTGGAATGG
ATCTCTGTCTTAGAGTTGAAGGGAAAACTGGTGGCAATGATGAGTTTATG
GTTGGGGTACATGTCGATGATATAATTGTATCGGGAGAGAACGATGTCTG
TGATGAGTTCTTCAGTGAGTTGAAAGAGAGATTTCCTGTGAAACACCAAG
GGGAGTTAAAGATGTACACCGGCTGTGCATTTGAACGTGATTGGGAGAAC
GGGATCCTAGAAATAAACCAAAAGACGTTTGCGGAAAACATGGTTACACA
GTACGGAATCACCGCTGTTTCCAATATTCCAGCGAGTCCTGGAATGGATC
TCTGTCTTAGAGTTGAAGGGAAAACTGGTGGCAATGATGAGTTT
back to top