mRNA_H-elongata_contig7670.15339.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7670.15339.1
Unique NamemRNA_H-elongata_contig7670.15339.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7670.15339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7670contigH-elongata_contig7670:3890..5872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931171.2696373-CDS-H-elongata_contig7670:3889..39641622931171.2696373-CDS-H-elongata_contig7670:3889..3964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7670 3890..3964 +
1691679727.5351803-CDS-H-elongata_contig7670:3889..39641691679727.5351803-CDS-H-elongata_contig7670:3889..3964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7670 3890..3964 +
1622931171.2865336-CDS-H-elongata_contig7670:5687..58701622931171.2865336-CDS-H-elongata_contig7670:5687..5870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7670 5688..5870 +
1691679727.5447698-CDS-H-elongata_contig7670:5687..58701691679727.5447698-CDS-H-elongata_contig7670:5687..5870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7670 5688..5870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7670.15339.1prot_H-elongata_contig7670.15339.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7670 3890..5870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7670.15339.1

>prot_H-elongata_contig7670.15339.1 ID=prot_H-elongata_contig7670.15339.1|Name=mRNA_H-elongata_contig7670.15339.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
VPTLALSPPPYVTSPSTMKAPTPSTSPAGTGSPTASRTSLFWTLPPTIVP
SMSRDRQSNYATDSPAPQGSKDITGAPISEPPAVIP
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mRNA from alignment at H-elongata_contig7670:3890..5872+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7670.15339.1 ID=mRNA_H-elongata_contig7670.15339.1|Name=mRNA_H-elongata_contig7670.15339.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1983bp|location=Sequence derived from alignment at H-elongata_contig7670:3890..5872+ (Himanthalia elongata Himel1 dioecious)
GTTCCGACTCTGGCCCTTTCACCACCGCCGTACGTCACAAGTCCATCGAC
GATGAAGGCGCCGACACCGTCGACGGTAGGTTGCTTGCGGGTGGAAGAAG
TTGGCAGCATCATATGTGTGGAGGCATGCACAGAGATGTTCCTCGTGTCG
TGTTAAATTGAGTTATTTGTCTGCGCCATTTTCCTTTTTGGGGGCACGTA
TTAAGTAAAGGTCGGTGATTGCTCGATAGCGTCCACATTGCGGTTGGTTC
AGATCAGCAACCTATCTTCGGTCAAGTAACTTATTGCCATGATGCTCTCG
AAAGTAATGTCAAATTTAGTATCGAAAATGGTGCTTCTTTTTGCTTCCCC
ATTTTCACTGAAAATGGTGATAAAAGTCATTACATTCTAGAATTAGCGCA
TTGTCGAGCAAAATACTGCTTCTTCTGCGCTATCTACCTATAAATAAATA
TTTTCGTTTCGGTGTTCGCGTGTATTACGCTCCATGTTACGTTAGCTATT
ATTCAATGATTGCCGATATCCTCCGATATTTTATTATTGCTTGCTCCTAC
TTCCACTTCCACCCCGCGCCAATGCCGTCGAAGGAAGCGTTATAGCGAAT
TAGCCGCCCAATGTTATCGTTGAATTACAGCAATATTCCCCTTACTAAAT
TCCAAATCAGCGAGTAACGAGATCCACCGAGTCCATAGTATGTTCGTGAA
ATTATGAACGGATTATGTGACCAGGAATGAAATATCCCCCACCTCTTTCT
CAAAATCCGTTTCTAATCTCACGAACACAGAAGAACCACACTTAGTTTAA
AATATATTTCATCTCTTATATCATAATTCGTTACTAATCTCACGAACATA
CTGTGGGTATTATATATATAACAAACAAGTAAAGGAGCCCATGTGCAGTT
ACCATCGATTCTCGTTGAAATAACCATTTTTTATTATATTGCTTCGGCTC
AGTCAGCCTATTATTATAGTAGTGGCGAGACCTCGTTATATGTGACGGCA
AATTAACTGGATAATCAAACGAAATACACTGGGCGAATTAAGTCCCCAGC
CCAAGGGTGTATTTTAACAATGTCGAACATAGCTTCAACAACGATGGCGG
AAATGACATGGGTGGCGCAGTGCGCTGTGGAAATTGATAGCTCAGGCTTG
TACGGGTAATATTTTCTAGATTTGCATCCTAATGTGAAATAGGGCATCTA
TGACCGTAAACCAATCGGGGAATGTGACCTCGCAAAGTATTCAGTGACGT
TATCCCTCCCTCGAACCTACCATAGCATATACGATACTATCGACTTGTAC
CAAGGTTCAAATGTTTGGTACTTGTCGCGTACGTTTTGACAGCCTCAGTT
AGAATTCAGGCGACACGGGTACATACGGTACAAGTAAGAATTGCGCTATA
TTATTGCCCATTAAATAAAATCCTTATTTCTTCATTTTGACTTTCTGTAT
GGGATCGCTAAATAGTACTCCCGCTCTATACGCCGTTGTACATCCGCCGA
TCGAGAGCCCGACCATTCTGTATGTCAACCTGTCATTTGCGCGTAACGTT
CCGTGGACAAAACGTGGCTAAACCTGTTTCCGAGTATTGCTCCTAGCCAA
ACTGAAGTGGCCGCCTCGGGGGATGTGACCATGATTACTAAAAAATATGG
GGGAAGACCCGCGATCAACGTGATCCGGTGGCAGTGTAATAAATCAAGCA
TTAACATCCGTCTTCGTCTCCGTCTCCAATCCCTCCGCTACCTTTCTCCT
GCCTGCACATTGTTGGTTTCCGTACGATCGCCGCCACCGAGTACACAGTC
CCCTGCTGGGACAGGTTCACCGACTGCCTCAAGAACATCGCTATTTTGGA
CCCTTCCACCGACCATCGTGCCTTCTATGTCGCGAGATAGGCAATCGAAC
TACGCGACCGATTCGCCCGCCCCGCAAGGAAGTAAGGATATTACTGGAGC
TCCGATATCAGAGCCGCCAGCAGTAATTCCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig7670:3890..5872+

>mRNA_H-elongata_contig7670.15339.1 ID=mRNA_H-elongata_contig7670.15339.1|Name=mRNA_H-elongata_contig7670.15339.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig7670:3890..5872+ (Himanthalia elongata Himel1 dioecious)
GTTCCGACTCTGGCCCTTTCACCACCGCCGTACGTCACAAGTCCATCGAC
GATGAAGGCGCCGACACCGTCGACGGTTCCGACTCTGGCCCTTTCACCAC
CGCCGTACGTCACAAGTCCATCGACGATGAAGGCGCCGACACCGTCGACG
TCCCCTGCTGGGACAGGTTCACCGACTGCCTCAAGAACATCGCTATTTTG
GACCCTTCCACCGACCATCGTGCCTTCTATGTCGCGAGATAGGCAATCGA
ACTACGCGACCGATTCGCCCGCCCCGCAAGGAAGTAAGGATATTACTGGA
GCTCCGATATCAGAGCCGCCAGCAGTAATTCCATCCCCTGCTGGGACAGG
TTCACCGACTGCCTCAAGAACATCGCTATTTTGGACCCTTCCACCGACCA
TCGTGCCTTCTATGTCGCGAGATAGGCAATCGAACTACGCGACCGATTCG
CCCGCCCCGCAAGGAAGTAAGGATATTACTGGAGCTCCGATATCAGAGCC
GCCAGCAGTAATTCCA
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