mRNA_H-elongata_contig76667.15337.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76667.15337.1
Unique NamemRNA_H-elongata_contig76667.15337.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig76667.15337.1 vs. uniprot
Match: A0A6H5KGP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP0_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 6.910e-25
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:   10 VRVESAKFDQQKDEFMNVEGEAAVDVDMMKELRDMKEKMAGPGDRYAKETRKYNPEFAADHPDEE-YDAKIEEV 228
            V+VESAKFD +KDEFMNV+GEA  DVD+MKELRDMKEKMAGPGD+YAK+TR YNP+FAA   DEE YD KI E 
Sbjct:  341 VKVESAKFDAEKDEFMNVDGEAEFDVDIMKELRDMKEKMAGPGDKYAKDTRAYNPDFAAAAGDEEEYDKKIREA 414
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BLAST of mRNA_H-elongata_contig76667.15337.1 vs. uniprot
Match: D8LDI5_ECTSI (MscS Mechanosensitive ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDI5_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.480e-24
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:   10 VRVESAKFDQQKDEFMNVEGEAAVDVDMMKELRDMKEKMAGPGDRYAKETRKYNPEFAADHPDEE-YDAKIEEV 228
            V+VESAKFD +KDEFM+V+GEA  DVD+MKELRDMKEKMAGPGD YAK+TR YNP+FAA   DEE YD KI+E 
Sbjct:  174 VKVESAKFDAEKDEFMDVDGEAEFDVDIMKELRDMKEKMAGPGDSYAKDTRAYNPDFAAAAGDEEEYDKKIKEA 247
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BLAST of mRNA_H-elongata_contig76667.15337.1 vs. uniprot
Match: A0A835YR84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR84_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.450e-14
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:   10 VRVESAKFDQQKDEFMNVEGEAAVDVDMMKELRDMKEKMAGPGDRYAKETRKYNPEFAADH 192
            +R E+ KF Q  +E M VEGE A + D+M+ELR MKE+  GPGD+YAKETR+YNPEFAA H
Sbjct:  104 IREENTKFQQNAEEHM-VEGEVAYNEDLMRELRRMKEENVGPGDKYAKETRRYNPEFAATH 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76667.15337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KGP0_9PHAE6.910e-2575.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDI5_ECTSI1.480e-2474.32MscS Mechanosensitive ion channel n=1 Tax=Ectocarp... [more]
A0A835YR84_9STRA5.450e-1462.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76667contigH-elongata_contig76667:181..681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMscS Mechanosensitive ion channel
Ec32 orthologEc-15_000470.1
Exons2
Model size231
Cds size231
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931171.1555543-CDS-H-elongata_contig76667:180..3041622931171.1555543-CDS-H-elongata_contig76667:180..304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76667 181..304 -
1691679727.5046957-CDS-H-elongata_contig76667:180..3041691679727.5046957-CDS-H-elongata_contig76667:180..304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76667 181..304 -
1622931171.1768255-CDS-H-elongata_contig76667:574..6811622931171.1768255-CDS-H-elongata_contig76667:574..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76667 575..681 -
1691679727.5140183-CDS-H-elongata_contig76667:574..6811691679727.5140183-CDS-H-elongata_contig76667:574..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76667 575..681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76667.15337.1prot_H-elongata_contig76667.15337.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76667 181..681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76667.15337.1

>prot_H-elongata_contig76667.15337.1 ID=prot_H-elongata_contig76667.15337.1|Name=mRNA_H-elongata_contig76667.15337.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MEQVRVESAKFDQQKDEFMNVEGEAAVDVDMMKELRDMKEKMAGPGDRYA
KETRKYNPEFAADHPDEEYDAKIEEV*
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mRNA from alignment at H-elongata_contig76667:181..681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76667.15337.1 ID=mRNA_H-elongata_contig76667.15337.1|Name=mRNA_H-elongata_contig76667.15337.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=501bp|location=Sequence derived from alignment at H-elongata_contig76667:181..681- (Himanthalia elongata Himel1 dioecious)
ATGGAGCAGGTGAGGGTTGAGAGTGCAAAGTTCGACCAGCAGAAGGATGA
GTTCATGAACGTGGAGGGAGAAGCAGCCGTGGATGTCGACATGATGAAAG
AACTCAGGTACGTACGGTTGCCCCCACATCTCTGTAGAGCTTCTACATCT
CCCGGAACCGCGTGTATCGCCATTATCGGTTATAAGTGTATTGTGGGAGC
CATTATCGCGTGGGAGCCGCGTCTGCTGTCCAATGCGGTTTGGGGTTAGG
ATTAGGGTTACCCTAACCCTATCGATTTATGTGGTAACGCTGAAAACTCC
CCTGATGGTCTACCAGAGCAAGATGTAATCGGTGGTACGGTTGCGCATTT
GGTTCCGTCTGACGTGGCGAATCGCAGAGACATGAAGGAAAAGATGGCTG
GGCCAGGCGACAGGTACGCCAAGGAAACACGGAAGTACAACCCGGAATTT
GCTGCAGATCACCCGGACGAGGAATACGATGCCAAGATTGAAGAGGTATA
G
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Coding sequence (CDS) from alignment at H-elongata_contig76667:181..681-

>mRNA_H-elongata_contig76667.15337.1 ID=mRNA_H-elongata_contig76667.15337.1|Name=mRNA_H-elongata_contig76667.15337.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig76667:181..681- (Himanthalia elongata Himel1 dioecious)
ATGGAGCAGGTGAGGGTTGAGAGTGCAAAGTTCGACCAGCAGAAGGATGA
GTTCATGAACGTGGAGGGAGAAGCAGCCGTGGATGTCGACATGATGAAAG
AACTCAGATGGAGCAGGTGAGGGTTGAGAGTGCAAAGTTCGACCAGCAGA
AGGATGAGTTCATGAACGTGGAGGGAGAAGCAGCCGTGGATGTCGACATG
ATGAAAGAACTCAGAGACATGAAGGAAAAGATGGCTGGGCCAGGCGACAG
GTACGCCAAGGAAACACGGAAGTACAACCCGGAATTTGCTGCAGATCACC
CGGACGAGGAATACGATGCCAAGATTGAAGAGGTATAGAGACATGAAGGA
AAAGATGGCTGGGCCAGGCGACAGGTACGCCAAGGAAACACGGAAGTACA
ACCCGGAATTTGCTGCAGATCACCCGGACGAGGAATACGATGCCAAGATT
GAAGAGGTATAG
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