mRNA_H-elongata_contig76632.15333.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76632.15333.1
Unique NamemRNA_H-elongata_contig76632.15333.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76632.15333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76632contigH-elongata_contig76632:878..1521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size644
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76632.15333.1prot_H-elongata_contig76632.15333.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76632 993..1337 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931170.6659558-UTR-H-elongata_contig76632:877..9921622931170.6659558-UTR-H-elongata_contig76632:877..992Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76632 878..992 +
1691679727.289432-UTR-H-elongata_contig76632:877..9921691679727.289432-UTR-H-elongata_contig76632:877..992Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76632 878..992 +
1622931170.6986454-UTR-H-elongata_contig76632:1337..15211622931170.6986454-UTR-H-elongata_contig76632:1337..1521Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76632 1338..1521 +
1691679727.3076115-UTR-H-elongata_contig76632:1337..15211691679727.3076115-UTR-H-elongata_contig76632:1337..1521Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig76632 1338..1521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931170.6823254-CDS-H-elongata_contig76632:992..13371622931170.6823254-CDS-H-elongata_contig76632:992..1337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76632 993..1337 +
1691679727.2983966-CDS-H-elongata_contig76632:992..13371691679727.2983966-CDS-H-elongata_contig76632:992..1337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76632 993..1337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76632.15333.1

>prot_H-elongata_contig76632.15333.1 ID=prot_H-elongata_contig76632.15333.1|Name=mRNA_H-elongata_contig76632.15333.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MHVCIFLCMYGLTFSRRTNRIWFSSARGQLNRENHFPCPRRFYVPAVDGC
GQRWKWARKWGTCAMERYLSNLGFPWVYDWRARASVCELMDGDVIARSKG
VRYRKEGDVRHQQA*
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mRNA from alignment at H-elongata_contig76632:878..1521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76632.15333.1 ID=mRNA_H-elongata_contig76632.15333.1|Name=mRNA_H-elongata_contig76632.15333.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=644bp|location=Sequence derived from alignment at H-elongata_contig76632:878..1521+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGCGACGAGGCCACGCCTCTCGTGACATGGAAGAGGAGAATGTGG
TTGGAGTACATTAGGCCAATGCTCGCCGATCGAACGTTCCGCCTACGCTT
TCGGGTGGATTATGTATGCATGTATGTATTTTTTTATGTATGTATGGTCT
CACTTTCAGCAGAAGGACCAACCGGATTTGGTTTTCTTCTGCTCGTGGTC
AGCTGAACAGGGAGAATCATTTTCCTTGTCCCCGAAGATTTTATGTGCCT
GCGGTAGATGGGTGTGGCCAGCGCTGGAAATGGGCCAGAAAATGGGGAAC
TTGCGCAATGGAGCGATACCTGTCGAATCTCGGGTTTCCATGGGTTTACG
ATTGGCGAGCAAGAGCCTCCGTGTGTGAGCTCATGGATGGCGATGTCATC
GCGAGGAGCAAAGGGGTACGCTATCGTAAGGAGGGTGATGTACGCCATCA
ACAAGCTTAGTCGTCTGGATTGCGTTTAGCTCTCGGGTGATTATGTTGGT
GCGGGAGGCTGACGTGGCGGGAGAGCTCCGGTCACCCTTTCCATACTCCT
CTGTCCCGGAGCCGATGGTGTCTGTGAGGCATTTGCCTGGTCGCCGTCTT
CCTCCGAAGACATGTTGTGATTGGTTAAGCGACGCGAGCTGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig76632:878..1521+

>mRNA_H-elongata_contig76632.15333.1 ID=mRNA_H-elongata_contig76632.15333.1|Name=mRNA_H-elongata_contig76632.15333.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig76632:878..1521+ (Himanthalia elongata Himel1 dioecious)
ATGCATGTATGTATTTTTTTATGTATGTATGGTCTCACTTTCAGCAGAAG
GACCAACCGGATTTGGTTTTCTTCTGCTCGTGGTCAGCTGAACAGGGAGA
ATCATTTTCCTTGTCCCCGAAGATTTTATGTGCCTGCGGTAGATGGGTGT
GGCCAGCGCTGGAAATGGGCCAGAAAATGGGGAACTTGCGCAATGGAGCG
ATACCTGTCGAATCTCGGGTTTCCATGGGTTTACGATTGGCGAGCAAGAG
CCTCCGTGTGTGAGCTCATGGATGGCGATGTCATCGCGAGGAGCAAAGGG
GTACGCTATCGTAAGGAGGGTGATGTACGCCATCAACAAGCTTAGATGCA
TGTATGTATTTTTTTATGTATGTATGGTCTCACTTTCAGCAGAAGGACCA
ACCGGATTTGGTTTTCTTCTGCTCGTGGTCAGCTGAACAGGGAGAATCAT
TTTCCTTGTCCCCGAAGATTTTATGTGCCTGCGGTAGATGGGTGTGGCCA
GCGCTGGAAATGGGCCAGAAAATGGGGAACTTGCGCAATGGAGCGATACC
TGTCGAATCTCGGGTTTCCATGGGTTTACGATTGGCGAGCAAGAGCCTCC
GTGTGTGAGCTCATGGATGGCGATGTCATCGCGAGGAGCAAAGGGGTACG
CTATCGTAAGGAGGGTGATGTACGCCATCAACAAGCTTAG
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